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How to Cite the REGA HPV Automated Subtying Tool

This tool has two publications available. Please cite both papers. The first listed paper has specific information on the HPV generas and species used in this tool, such information is also found in the HPV subtyping process webpage.

A Standardized Framework for Accurate, High-throughput Genotyping of Recombinant and Non-recombinant Viral Sequences. Alcantara LCJ, Cassol S, Libin P, Deforche K, Pybus OG, Van Ranst M, Galvao-Castro B, Vandamme A-M, and de Oliveira T. (2009) Nucleic Acids Research, 1-9, doi: 10.1093/nar/gkp455     

An Automated Genotyping System for Analysis of HIV-1 and other Microbial Sequences.
de Oliveira T, Deforche K, Cassol S, Salminem M, Paraskevis D, Seebregts C, Snoeck J, van Rensburg EJ, Wensing AMJ, van de Vijver DA, Boucher CA, Camacho R, and Vandamme A-M. (2005) Bioinfomatics, 21 (19), 3797-3800.









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Developed by: Annabel Rector, Marc Van Ranst, Andrew Rambaut, and Tulio de Oliveira.

Developed in collaboration between the Africa Centre for Health and Population Studies bioinformatics group, UKZN, South Africa and the the REGA Institute at the Katholieke Universiteit Leuven, Belgium.

Funded by the Marie Curie Fellowship, Flemish Fund for Scientific Research (Fonds voor Wetenschappelijk Onderzoek, FWO) grant G.0513.06 and by a postdoctoral fellowship of the Research Fund K.U.Leuven


Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.