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How to Cite the REGA HIV-1 Automated Subtyping Tool




This tool has two publications available. Please cite both papers.

A Standardized Framework for Accurate, High-throughput Genotyping of Recombinant and Non-recombinant Viral Sequences. Alcantara LCJ, Cassol S, Libin P, Deforche K, Pybus OG, Van Ranst M, Galvao-Castro B, Vandamme A-M, and de Oliveira T. (2009) Nucleic Acids Research, 1-9, doi: 10.1093/nar/gkp455     

An Automated Genotyping System for Analysis of HIV-1 and other Microbial Sequences.
de Oliveira T, Deforche K, Cassol S, Salminem M, Paraskevis D, Seebregts C, Snoeck J, van Rensburg EJ, Wensing AMJ, van de Vijver DA, Boucher CA, Camacho R, and Vandamme A-M. (2005) Bioinfomatics, 21 (19), 3797-3800.



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Developed by: Tulio de Oliveira, Koen Deforche, Sharon Cassol, Andrew Rambaut and Anne-Mieke Vandamme.

Developed in collaboration between the Africa Centre for Health and Population Studies bioinformatics group, UKZN, South Africa, the Evolutionary Biology Group at University of Oxford, UK., the HIV-1 Pathogenesis and Immunotherapeutics Program at University of Pretoria, South Africa, and the REGA Institute at the Katholieke Universiteit Leuven, Belgium.
Funded by the Marie Curie Fellowship, Flanders Bilateral Cooperation Program and the Wellcome Trust (grant # 061238 ).

For questions, suggestions or problems please contact:  Dr. Tulio de Oliveira.