An integrated genetic data environment (GDE)-based LINUX interface for analysis of HIV-1 and other microbial sequences

Authors: De Oliveira T, Miller R, Tarin M, Cassol S.
Title: An integrated genetic data environment (GDE)-based LINUX interface for analysis of HIV-1 and other microbial sequences
Journal: Bioinformatics,19(1):153-4 (2003)

Reference: De Oliveira T, Miller R, Tarin M, Cassol S. An integrated genetic data environment (GDE)-based LINUX interface for analysis of HIV-1 and other microbial sequences Bioinformatics,19(1):153-4 (2003).

Citation details*

Journal Impact Factor (I.F.): 4.926
Number of citations: 12

*Sources: Thompson I.F. & Google Scholar (Jan 2012)

Abstract

MOTIVATION: Sequence databases encode a wealth of information needed to develop improved vaccination and treatment strategies for the control of HIV and other important pathogens. To facilitate effective utilization of these datasets, we developed a user-friendly GDE-based LINUX interface that reduces input/output file formatting.

DESIGN AND RESULTS: GDE was adapted to the Linux operating system, bioinformatics tools were integrated with microbe-specific databases, and up-to-date GDE menus were developed for several clinically important viral, bacterial and parasitic genomes. Each microbial interface was designed for local access and contains Genbank, BLAST-formatted and phylogenetic databases.

AVAILABILITY: GDE-Linux is available for research purposes by direct application to the corresponding author. Application-specific menus and support files can be downloaded from (http://www.bioafrica.net)

Download: Full text paper

SATuRN output, All publications...

Page design updated by Tulio de Oliveira, 2011