Genbank References
BLAST search against GenBank file v. V 185.0 released on 2011-08-15
(search results include 129505 sequences from 1677 references)
| This page contains a list of all GenBank entries on HIV-1 protease, RT and
integrase grouped by reference. The reference may include a published paper or the title provided with the GenBank submission. The purpose of this page is to show which GenBank entries are in the HIV Drug Resistance Database and which aren't. The last column (Annotation) of the table shows whether or not there are plans to add the entry to the database. Each entry in the Annotation column is linked to a page explaining the annotation. The entries were created by performing a BLAST search of the GenBank using the consensus B protease, RT and integrase amino acid sequence (give link to the sequences). The E-value column contains the lowest e-value (best match) for all the GenBank entries associated with a specific reference. The columns, # in GB, # in HIVDB, and % in HIVDB indicate the number of entries in GenBank associated with the reference, the number of these entries that are also in the HIV Drug Resistance Database, and the % of GenBank entries from a particular reference that are in the HIV Drug Resistance Database. For a treatment summary for every isolate in our database and in the GenBank, click here. This file indicates whether or not the person from whom the sequenced virus was obtained had received one or more nucleoside RT inhibitor, nonnucleoside RT inhibitor, or protease inhibitor. |
| Authors | Title | Citation | E-value | # in HIVDB | # in Gb | % in HIVDB | Annotation |
|---|---|---|---|---|---|---|---|
| Abecasis (2007) | RECOMBINATION confounds the early evolutionary history of human immunodeficiency virus type 1: subtype g is a circulating recombinant form | J. Virol. 81 (16), 8543-8551 (2007) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Abecasis (2011) | Molecular epidemiological analysis of paired pol/env sequences from portuguese HIV-1 patients | AIDS Res. Hum. Retroviruses (2011) In press | 0 | |
154 18PR 154RT |
0 | Pending |
| Acharya (2009) | Human immunodeficiency virus type 1 drug resistance mutations in patients from India | Unpublished | 1e-178 | |
1 1RT |
0 | Unpublished |
| Achkar (2004) | INFECTION with group M non-B HIV-1 subtypes in individuals living in New York City | Unpublished | 1e-159 | |
34 34PR 3RT |
0 | ARV Rx and/or other data are N/A |
| Adachi (1986) | PRODUCTION of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone | J. Virol. 59 (2), 284-291 (1986) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Adojaan (2004) | PREDOMINANCE of a Rare Type of HIV-1 in Estonia | J. Acquir. Immune Defic. Syndr. 39 (5), 598-605 (2005) | 0 | 4 4PR 4RT 4IN |
143 142PR 4RT 4IN |
2 | Gene fragment(s) |
| Aghokeng (2007) | FULL-LENGTH sequence analysis of SIVmus in wild populations of mustached monkeys (Cercopithecus cephus) from Cameroon provides evidence for two co-circulating SIVmus lineages | Virology 360 (2), 407-418 (2007) | 0 | 5 3PR 5RT 5IN |
5 5RT 5IN |
100 | HIVDB |
| Aghokeng (2009) | Evaluation of transmitted HIV drug resistance among recently-infected antenatal clinic attendees in four Central African countries | Antivir. Ther. (Lond.) 14 (3), 401-411 (2009) | 0 | 135 135PR 135RT |
135 3PR 135RT |
100 | HIVDB |
| Aghokeng (2010) | Extensive survey on the prevalence and genetic diversity of SIVs in primate bushmeat provides insights into risks for potential new cross-species transmissions | Infect. Genet. Evol. (2009) In press | 0 | |
20 2RT 20IN |
0 | Pending |
| Aghokeng (2010) | Genetic diversity of simian lentivirus in wild De Brazza's monkeys (Cercopithecus neglectus) in Equatorial Africa | J. Gen. Virol. 91 (PT 7), 1810-1816 (2010) | 2e-70 | |
1 1IN |
0 | Pending |
| Aghokeng (2011) | High Failure Rate of the ViroSeq HIV-1 Genotyping System for Drug Resistance Testing in Cameroon, a Country with Broad HIV-1 Genetic Diversity | J. Clin. Microbiol. 49 (4), 1635-1641 (2011) | 1e-176 | |
145 22PR 145RT |
0 | Pending |
| Agneskog (2008) | CHANGES in mutation patterns of a mosaic genome HIV-1 strain after treatment with nucleoside analogs and the integrase inhibitor raltegravir | Unpublished | 1e-173 | |
4 2RT 2IN |
0 | Pending |
| Agwale (2003) | GENOTYPIC and phenotypic analyses of human immunodeficiency virus type 1 in antiretroviral drug-naive nigerian patients | AIDS Res. Hum. Retroviruses 22 (1), 22-26 (2006) | 5e-81 | 18 18PR 18RT |
18 18PR 18RT |
100 | HIVDB |
| Agwu (2008) | Analyses of HIV-1 Drug-Resistance Profiles Among Infected Adolescents Experiencing Delayed Antiretroviral Treatment Switch Following Initial Nonsuppressive Highly Active Antiretroviral Therapy | Unpublished | 1e-155 | |
155 146PR 31RT |
0 | Pending |
| Ahuka-Mundeke (2010) | Full-length genome sequence a of Simian Immunodeficiency Viruses infecting a captive Agile Mangabey (Cercocebus agilis) is closely related to SIVrcm infecting red-capped mangabeys in Cameroon | Unpublished | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Ahumada-Ruiz (2009) | Analysis of HIV-1 pol sequences from Panama: identification of phylogenetic clusters within subtype B and detection of antiretroviral drug resistance mutations | Infect. Genet. Evol. 9 (5), 933-940 (2009) | 0 | |
136 80PR 135RT |
0 | Pending |
| Ait-Khaled (2002) | MUTATIONS in HIV-1 reverse transcriptase during therapy with abacavir, lamivudine and zidovudine in HIV-1-infected adults with no prior antiretroviral therapy | Antivir. Ther. (Lond.) 7 (1), 43-51 (2002) | 1e-98 | 156 156RT |
156 156RT |
100 | HIVDB |
| Albert (1992) | PERSISTENCE of azidothymidine-resistant human immunodeficiency virus type 1 RNA genotypes in posttreatment sera | J. Virol. 66 (9), 5627-5630 (1992) | 5e-55 | 20 20RT |
20 20RT |
100 | HIVDB |
| Albert (1994) | ANALYSIS of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes | J. Virol. 68 (9), 5918-5924 (1994) | 4e-77 | 23 23RT |
26 26RT |
88 | HIVDB |
| Alcalde (2011) | Clinical, epidemiological and molecular features of the HIV-1 subtype C and recombinants forms which is circulating in Sao Paulo city, Brazil | Unpublished | 1e-149 | |
14 12PR 8RT |
0 | Unpublished |
| Alexander (2002) | INHIBITION of Human Immunodeficiency Virus Type 1 (HIV-1) Replication by a Two-Amino-Acid Insertion in HIV-1 Vif from a Nonprogressing Mother and Child | J. Virol. 76 (20), 10533-10539 (2002) | 0.027 | |
1 1IN |
0 | Gene fragment(s) |
| Ali (2010) | Structure-based design, synthesis, and structure-activity relationship studies of HIV-1 protease inhibitors incorporating phenyloxazolidinones | J. Med. Chem. 53 (21), 7699-7708 (2010) | 1e-166 | |
6 3PR 4RT |
0 | Laboratory/experimental isolate |
| Alizon (1986) | GENETIC variability of the AIDS virus: nucleotide sequence analysis of two isolates from African patients | Cell 46 (1), 63-74 (1986) | 1e-165 | 2 1PR 1RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Allan (1993) | SPECIES-SPECIFIC diversity among simian immunodeficiency viruses from African green monkeys | J. Virol. 65 (6), 2816-2828 (1991) | 2e-33 | |
8 8IN |
0 | Laboratory/experimental isolate |
| Allen (2005) | SELECTIVE Escape from CD8+ T-Cell Responses Represents a Major Driving Force of Human Immunodeficiency Virus Type 1 (HIV-1) Sequence Diversity and Reveals Constraints on HIV-1 Evolution | J. Virol. 79 (21), 13239-13249 (2005) | 0 | |
14 14PR 14RT 14IN |
0 | Evolution/quasispecies study |
| Altfeld (2003) | HIV-1 superinfection despite broad CD8+ T-cell responses containing replication of the primary virus | Nature 420 (6914), 434-439 (2002) | 0 | |
2 2PR 2RT |
0 | Case report(s) / study subset |
| Anderson (2000) | TESTING the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E | J. Virol. 74 (22), 10752-10765 (2000) | 1e-164 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Anderson (1993) | ANALYSIS of envelope changes acquired by SIVmac239 during neuroadaption in rhesus macaques | Virology 195 (2), 616-626 (1993) | 5e-99 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Andersson (1999) | MOLECULAR characterization of HIV-1 and HIV-2 in individuals from Guinea-Bissau with single or dual infections: predominance of a distinct HIV-1 subtype A/G recombinant in West Africa | Virology 261 (1999) In press | 2e-66 | 7 7RT |
7 7RT |
100 | HIVDB |
| Andreani (2008) | CLINICAL evolution and antiretroviral resistance patterns in HIV-1 dual infected patients in Argentina | Unpublished | 1e-151 | |
71 62PR 40RT |
0 | Pending |
| Andresen (2007) | CHARACTERIZATION of Near Full-Length Genomes of HIV Type 1 Strains in Denmark: Basis for a Universal Therapeutic Vaccine | AIDS Res. Hum. Retroviruses 23 (11), 1442-1448 (2007) | 0 | 17 17PR 17RT 17IN |
17 13PR 17RT 17IN |
100 | HIVDB |
| Anta (2010) | Identification of a new HIV-1 circulating recombinant form in Spain | Unpublished | 0 | |
4 4RT |
0 | Unpublished |
| Anton (2004) | GENOTYPIC Resistance to Efavirenz/Protease Inhibitor Regimens | Unpublished | 0 | |
219 219PR 219RT |
0 | ARV Rx and/or other data are N/A |
| Apetrei (1998) | HUMAN immunodeficiency virus type 1 subtype F reverse transcriptase sequence and drug susceptibility | J. Virol. 72 (5), 3534-3538 (1998) | 1e-77 | 14 14RT |
14 14RT |
100 | HIVDB |
| Apetrei (2003) | HIV type 1 diversity in Northeastern Romania in 2000-2001 based on phylogenetic analysis of pol sequences from patients failing antiretroviral therapy | AIDS Res. Hum. Retroviruses 19 (12), 1155-1161 (2003) | 1e-117 | 163 77PR 86RT |
163 77PR 86RT |
100 | HIVDB |
| Apetrei (2004) | DIRECT Inoculation of Simian Immunodeficiency Virus from Sooty Mangabeys in Black Mangabeys (Lophocebus aterrimus): First Evidence of AIDS in a Heterologous African Species and Different Pathologic Outcomes of Experimental Infection | J. Virol. 78 (21), 11506-11518 (2004) | 4e-71 | |
18 18IN |
0 | Laboratory/experimental isolate |
| Apetrei (2005) | MOLECULAR Epidemiology of Simian Immunodeficiency Virus SIVsm in U.S. Primate Centers Unravels the Origin of SIVmac and SIVstm | J. Virol. 79 (14), 8991-9005 (2005) | 4e-90 | 47 47IN |
47 47IN |
100 | HIVDB |
| Apetrei (2006) | POTENTIAL for HIV transmission through unsafe injections | AIDS 20 (7), 1074-1076 (2006) | 1e-148 | |
21 17PR 13RT |
0 | Pending |
| Apetrei (2007) | SIVSMM Subtypes Induce Specific Immunologic and Virologic Changes in Naturally-Infected Sooty Mangabeys | Unpublished | 3e-70 | |
96 96IN |
0 | Pending |
| Arien (2005) | REPLICATIVE fitness of historical and recent HIV-1 isolates suggests HIV-1 attenuation over time | AIDS 19 (15), 1555-1564 (2005) | 0 | 23 23PR 23RT |
23 23RT |
100 | Case report(s) / study subset |
| Arnold (1995) | AT least five HIV-1 sequence subtypes (A, B, C, D, A/E) occur in England | AIDS Res. Hum. Retroviruses 11 (3), 427-429 (1995) | 1e-126 | |
4 4PR |
0 | Case report(s) / study subset |
| Arroyo (2004) | HIV Type 1 Subtypes among Blood Donors in the Mbeya Region of Southwest Tanzania | AIDS Res. Hum. Retroviruses 20 (8), 895-901 (2004) | 0 | 20 20PR 20RT 20IN |
20 20PR 20RT 20IN |
100 | HIVDB |
| Arroyo (2006) | HIV-1 diversity and prevalence differ between urban and rural areas in the Mbeya region of Tanzania | AIDS 19 (14), 1517-1524 (2005) | 0 | 14 14PR 14RT 14IN |
14 8PR 14RT 14IN |
100 | HIVDB |
| Arruda (2009) | Genetic diversity on the integrase region of the pol gene among HIV-1-infected patients naive for integrase inhibitors in Sao Paulo city, Brazil | AIDS Res. Hum. Retroviruses 26, 1 (2010) | 1e-168 | 76 76IN |
76 76IN |
100 | HIVDB |
| Arruda (2010) | Differences in frequencies of pi-resistance mutations from HIV-1 of different subtypes (B, C and F) in a cohort of patients failing arv therapy | Unpublished | 0 | |
869 245PR 787RT |
0 | Pending |
| Atkinson (2000) | CORRELATION between human immunodeficiency virus genotypic resistance and virologic response in patients receiving nelfinavir monotherapy or nelfinavir with lamivudine and zidovudine | J. Infect. Dis. 182 (2), 420-427 (2000) | 1e-123 | 49 49PR |
78 50PR 28RT |
62 | HIVDB |
| Aulicino (2004) | CIRCULATION of novel HIV type 1 A, B/C, and F subtypes in Argentina | AIDS Res. Hum. Retroviruses 21 (2), 158-164 (2005) | 0 | 1 1PR 1RT 1IN |
3 2PR 3RT 1IN |
33 | Case report(s) / study subset |
| Aulicino (2005) | SEQUENCE Analysis of a South American HIV Type 1 BC Recombinant | AIDS Res. Hum. Retroviruses 21 (10), 894-896 (2005) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Aulicino (2009) | HIV-1 non-nucleoside resistance mutations K103N + L100I are strongly associated with nucleoside resistance mutation L74V in BF recombinants from Argentine children under treatment failure, and reduce susceptibility to Etravirine | Antivir Ther. 2010;15(4):641-50 | 3e-52 | |
8 8PR |
0 | Pending |
| Auswinporn (2001) | GENOTYPIC subtyping of the HIV-1 polymerase gene in 30 naave patients from Thailand | Southeast Asian J. Trop. Med. Public Health 32 (2), 346-350 | 1e-121 | 6 6PR 6RT |
27 27PR 27RT |
22 | HIVDB |
| Auwanit (2001) | FULL-LENGTH sequences of two CRF01_ae (subtype e) HIV type 1 isolates from 1995 samples of patients with sexually transmitted diseases in Thailand | AIDS Res. Hum. Retroviruses 17 (9), 867-871 (2001) | 1e-165 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Auwanit (2009) | Detection of drug resistance-associated and background mutations in human immunodeficiency virus type 1 CRF01_AE protease and reverse transcriptase derived from drug treatment-naive patients residing in central Thailand | AIDS Res. Hum. Retroviruses 25 (6), 625-631 (2009) | 1e-149 | 62 43PR 19RT |
106 87PR 19RT |
58 | HIVDB |
| Avi (2009) | Prevalence of Drug Resistance Mutations of Human Immunodeficiency Virus - 1 CRF06_cpx in Treatment-Naive Patients in Estonia in 2008 | Unpublished | 1e-144 | 55 55PR 55RT |
55 55RT |
100 | HIVDB |
| Avi (2009) | Polymorphisms of HIV-1 CRF06_cpx integrases in Estonia | Unpublished | 1e-164 | 112 112IN |
114 114IN |
98 | HIVDB |
| AYEHUMIE (1991) | Unpublished (1991) | 4e-41 | |
8 8PR |
0 | Gene fragment(s) | |
| Ayouba (2009) | Low prevalence of HIV type 1 drug resistance mutations in untreated, recently infected patients from Burkina Faso, Cote d'Ivoire, Senegal, Thailand, and Vietnam: the ANRS 12134 study | AIDS Res. Hum. Retroviruses 25 (11), 1193-1196 (20 | 4e-51 | 105 105PR |
105 105PR |
100 | HIVDB |
| Azevedo-Pereira (1998) | COMPLETE nucleotide sequence of HIV-2ALI, a low infectious isolate with restricted tropism to primary CD4+ cells | Unpublished | 2e-97 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Babic (2005) | PREVALENCE of antiretroviral drug resistance mutations and HIV-1 non-B subtypes in newly diagnosed drug-naive patients in Slovenia, 2000-2004 | Virus Res. 118 (1-2), 156-163 (2006) | 0 | 76 76PR 76RT |
76 63PR 76RT |
100 | HIVDB |
| Babic (2005) | MOLECULAR epidemiology of HIV-1 subtypes based on analysis of pol sequences in Slovenia, 1996-2005 | J. Med. Virol. 78 (8), 997-1002 (2006) | 0 | |
6 3PR 6RT |
0 | Case report(s) / study subset |
| Bacheler (2000) | HUMAN immunodeficiency virus type 1 mutations selected in patients failing efavirenz combination therapy | Antimicrob. Agents Chemother. 44 (9), 2475-2484 (2000) | 1e-130 | 3669 3646PR 3662RT |
3708 3708PR 3708RT |
98 | HIVDB |
| Bacheler (2001) | GENOTYPIC correlates of phenotypic resistance to efavirenz in virus isolates from patients failing nonnucleoside reverse transcriptase inhibitor therapy | J. Virol. 75 (11), 4999-5008 (2001) | 1e-126 | 87 84PR 87RT |
87 84PR 87RT |
100 | HIVDB |
| Badreddine (2007) | IDENTIFICATION and Characterization of HIV Type 1 Subtypes Present in the Kingdom of Saudi Arabia: High Level of Genetic Diversity Found | AIDS Res. Hum. Retroviruses 23 (5), 667-674 (2007) | 0 | 60 6PR 6RT 60IN |
60 6RT 60IN |
100 | HIVDB |
| Baier (1990) | COMPLETE nucleotide sequence of a simian immunodeficiency virus from African green monkeys: a novel type of intragroup divergence | Virology 176 (1), 216-221 (1990) | 1e-109 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Bailey (2007) | EVOLUTION of HIV-1 in an HLA-B*57-Positive Patient during Virologic Escape | J. Infect. Dis. 196 (1), 50-55 (2007) | 0 | |
38 35RT 6IN |
0 | Evolution/quasispecies study |
| Bailey (2008) | TRANSMISSION of Human Immunodeficiency Virus Type 1 from a Patient Who Developed AIDS to an Elite Suppressor | J. Virol. 82 (15), 7395-7410 (2008) | 0 | |
14 7PR 7RT 14IN |
0 | Case report(s) / study subset |
| Balakrishnan (2005) | HIV Type 1 Genotypic Variation in an Antiretroviral Treatment-Naive Population in Southern India | AIDS Res. Hum. Retroviruses 21 (4), 301-305 (2005) | 1e-139 | 49 49PR 49RT |
49 3PR 49RT |
100 | HIVDB |
| Baldanti (2010) | Early emergence of raltegravir resistance mutations in patients receiving HAART salvage regimens | J. Med. Virol. 82 (1), 116-122 (2010) | 1e-156 | 11 11IN |
11 11IN |
100 | HIVDB |
| Baldrich-Rubio (2001) | A complex human immunodeficiency virus type 1 A/G/J recombinant virus isolated from a seronegative patient with AIDS from Benin, West Africa | J. Gen. Virol. 82 (PT 5), 1095-1106 (2001) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Balode (2010) | Direct Submission | Submitted (26-JAN-2010) Department of Virology, Sw | 7e-50 | |
1 1PR |
0 | Unpublished |
| Balode (2010) | Low prevalence of transmitted drug resistance among newly diagnosed HIV-1 patients in Latvia | J. Med. Virol. 82 (12), 2013-2018 (2010) | 1e-148 | 107 107PR 107RT |
107 79PR 67RT |
100 | HIVDB |
| Balode (2010) | Direct Submission | Submitted (26-JAN-2010) Department of Virology, Sw | 1e-143 | |
6 5PR 4RT |
0 | Unpublished |
| Balode (2010) | Low prevalence of transmitted drug resistance among newly diagnosed HIV-1 patients in Latvia | J. Med. Virol. 82 (12), 2013-2018 (2010) | 7e-49 | 2 2PR 2RT |
2 2PR |
100 | HIVDB |
| Balode (2010) | Low prevalence of transmitted drug resistance among newly diagnosed HIV-1 patients in Latvia | J. Med. Virol. 82 (12), 2013-2018 (2010) | 2e-48 | 3 3PR 3RT |
3 3PR |
100 | HIVDB |
| Balotta (2000) | PREVALENCE of transmitted nucleoside analogue-resistant HIV-1 strains and pre-existing mutations in pol reverse transcriptase and protease region: outcome after treatment in recently infected individuals | Antivir. Ther. (Lond.) 5 (1), 7-14 (2000) | 1e-128 | 71 33PR 38RT |
71 33PR 38RT |
100 | HIVDB |
| Balotta (2000) | PREVALENCE of multiple dideoxynucleoside analogue resistance (MddNR) in a multicentric cohort of HIV-1 Italian patients with virologic failure | Unpublished | 1e-133 | 149 132PR 149RT |
157 137PR 157RT |
94 | HIVDB |
| Balotta (2001) | INCREASING prevalence of non-clade B HIV-1 strains in heterosexual men and women, as monitored by analysis of reverse transcriptase and protease sequences | J. Acquir. Immune Defic. Syndr. 27 (5), 499-505 (2001) | 1e-100 | 19 19PR 19RT |
19 19PR 19RT |
100 | HIVDB |
| Bang (2007) | PREVALENCE of primary antiretroviral resistance: trends in Korea | AIDS Res. Hum. Retroviruses 24 (1), 83-85 (2008) | 0 | 81 81PR 81RT |
81 77PR 81RT |
100 | HIVDB |
| Banke (2009) | Positive selection pressure introduces secondary mutations at Gag cleavage sites in human immunodeficiency virus type 1 harboring major protease resistance mutations | J. Virol. 83 (17), 8916-8924 (2009) | 7e-52 | |
268 268PR |
0 | Pending |
| Bao (2008) | MOLECULAR tracing of sexual HIV Type 1 transmission in the southwest border of China | AIDS Res. Hum. Retroviruses 24 (5), 733-742 (2008) | 0 | |
2 1PR 2RT |
0 | Case report(s) / study subset |
| Bar (2010) | Wide variation in the multiplicity of HIV-1 infection among injection drug users | J. Virol. 84 (12), 6241-6247 (2010) | 3e-16 | |
390 390IN |
0 | Evolution/quasispecies study |
| Bar-Magen (2009) | Comparative Biochemical Analysis of HIV-1 Subtype B and C Integrase Enzymes | AIDS. 2010 Sep 10;24(14):2171-9. | 1e-165 | |
2 2IN |
0 | Laboratory/experimental isolate |
| Barditch-Crovo (2001) | PHASE i/ii trial of the pharmacokinetics, safety, and antiretroviral activity of tenofovir disoproxil fumarate in human immunodeficiency virus-infected adults | Antimicrob. Agents Chemother. 45 (10), 2733-2739 (2001) | 4e-96 | 14 14RT |
14 14RT |
100 | HIVDB |
| Barlow (2001) | RECOMBINANT strains of HIV type 1 in the United Kingdom | AIDS Res. Hum. Retroviruses 17 (5), 467-474 (2001) | 1e-109 | |
12 12PR 9RT |
0 | ARV Rx and/or other data are N/A |
| Barlow (2003) | CHARACTERIZATION of a novel simian immunodeficiency virus (SIVmonNG1) genome sequence from a mona monkey (Cercopithecus mona) | J. Virol. 77 (12), 6879-6888 (2003) | 3e-92 | 2 1PR 1RT 2IN |
2 1RT 2IN |
100 | HIVDB |
| Barnett (1993) | DISTINGUISHING features of an infectious molecular clone of the highly divergent and noncytopathic human immunodeficiency virus type 2 UC1 strain | J. Virol. 67 (2), 1006-1014 (1993) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Barnett (1996) | DIRECT Submission | Submitted (11-OCT-1995) Barton Bryant, HIV Database, Los Ala | 2e-98 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Barreto (2006) | TRENDS in Antiretroviral Drug Resistance among HIV-1-Infected Blood Donors in Sao Paulo City, Brazil | Unpublished | 1e-142 | 6 6PR 6RT |
6 4PR 3RT |
100 | HIVDB |
| Barrie (1996) | NATURAL variation in HIV-1 protease, Gag p7 and p6, and protease cleavage sites within gag/pol polyproteins: amino acid substitutions in the absence of protease inhibitors in mothers and children infected by human immunodeficiency virus type 1 | Virology 219 (2), 407-416 (1996) | 1e-126 | |
37 37PR |
0 | Case report(s) / study subset |
| Bartolo (2007) | ANALYSIS of HIV-1 protease and retrotranscriptase in drug-naive patients from Mozambique | Unpublished | 0 | 112 36PR 76RT |
112 36PR 76RT |
100 | HIVDB |
| Bartolo (2007) | MOLECULAR epidemiology of HIV-1 in Angola | Unpublished | 1e-170 | 140 19PR 121RT |
140 19PR 121RT |
100 | HIVDB |
| Bartolo (2008) | MOLECULAR epidemiology of HIV-1 infection in Maputo, Mozambique, and susceptibility to antiretroviral therapy | Unpublished | 1e-165 | 1 1PR 1RT |
1 1RT |
100 | HIVDB |
| Bartolo (2009) | Highly divergent subtypes and new recombinant forms prevail in the HIV/AIDS epidemic in Angola: new insights into the origins of the AIDS pandemic | Infect. Genet. Evol. 9 (4), 672-682 (2009) | 3e-49 | 9 9PR |
9 9PR |
100 | HIVDB |
| Bartolo (2010) | Origin and epidemiological history of CRF14_BG | Unpublished | 0 | 3 3PR 3RT 3IN |
3 3RT 3IN |
100 | HIVDB |
| Baxter (2006) | GENOTYPIC changes in human immunodeficiency virus type 1 protease associated with reduced susceptibility and virologic response to the protease inhibitor tipranavir | J. Virol. 80 (21), 10794-10801 (2006) | 0 | 1531 1531PR 1394RT |
1534 394PR 1397RT |
99 | HIVDB |
| Beck (2007) | OPTIMIZATION of the Oligonucleotide Ligation Assay (OLA), a Rapid and Inexpensive Test for Detection of HIV-1 Drug-Resistance Mutations, for Non-B Subtypes | Unpublished | 8e-53 | |
16 16PR |
0 | Case report(s) / study subset |
| Becker (1995) | MOLECULAR and phylogenetic characterisation of a Guinea-Bissau-derived human immunodeficiency virus type 2 isolate | Unpublished | 1e-100 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Becker-Pergola (2000) | ANALYSIS of HIV type 1 protease and reverse transcriptase in antiretroviral drug-naive Ugandan adults | AIDS Res. Hum. Retroviruses 16 (8), 807-813 (2000) | 1e-115 | 54 27PR 27RT |
54 27PR 27RT |
100 | HIVDB |
| Beer (1999) | SIMIAN immunodeficiency virus (SIV) from sun-tailed monkeys (Cercopithecus solatus): evidence for host-dependent evolution of SIV within the C. lhoesti superspecies | J. Virol. 73 (9), 7734-7744 (1999) | 4e-97 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Beer (2000) | PATTERNS of genomic sequence diversity among their simian immunodeficiency viruses suggest that L'Hoest monkeys (Cercopithecus lhoesti) are a natural lentivirus reservoir | J. Virol. 74 (8), 3892-3898 (2000) | 3e-99 | 3 3PR 3RT 3IN |
3 2PR 3RT 3IN |
100 | HIVDB |
| Beer (2001) | CHARACTERIZATION of novel simian immunodeficiency viruses from red-capped mangabeys from Nigeria (SIVrcmNG409 and -NG411) | J. Virol. 75 (24), 12014-12027 (2001) | 1e-133 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Beerenwinkel (2002) | DIVERSITY and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype | Proc. Natl. Acad. Sci. U.S.A. 99 (12), 8271-8276 (2002) | 1e-126 | |
489 466PR 467RT |
0 | Sequence Quality |
| Bellocchi (2009) | Subtype Analysis and Mutations to Antiviral Drugs in HIV-1-Infected Patients From Mozambique Before Initiation of Antiretroviral Therapy: Results From the DREAM Programme | J Med Virol (2005) | 1e-177 | 59 59PR 59RT |
59 59RT |
100 | HIVDB |
| BENVENISTE (1988) | Unpublished (1990) | 6e-99 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB | |
| Bermudez-Aza (2011) | Antiretroviral resistance in MSM in Brazil | Unpublished | 1e-153 | |
142 100PR 90RT |
0 | Unpublished |
| Bernardin (2003) | PRIMARY Infection of a Male Plasma Donor with Divergent HIV Variants from the Same Source Followed by Rapid Fluctuations in Their Relative Frequency and Viral Recombination | AIDS Res. Hum. Retroviruses 19 (11), 1009-1015 (2003) | 0 | |
3 3PR 3RT 3IN |
0 | Case report(s) / study subset |
| Bernardin (2004) | HUMAN immunodeficiency virus mutations during the first month of infection are preferentially found in known cytotoxic T-lymphocyte epitopes | J. Virol. 79 (17), 11523-11528 (2005) | 0 | 18 18PR 18RT 18IN |
18 18PR 18RT 18IN |
100 | HIVDB |
| Bernardin (2006) | DIRECT Submission | Submitted (12-DEC-2005) Molecular Virology, Blood Systems Re | 0 | 13 13PR 13RT 13IN |
13 13PR 13RT 13IN |
100 | HIVDB |
| Bessong (2004) | CHARACTERIZATION of Human Immunodeficiency Virus Type 1 from a Previously Unexplored Region of South Africa with a High HIV Prevalence | AIDS Res. Hum. Retroviruses 21 (1), 103-109 (2005) | 1e-168 | 26 13PR 13RT |
26 13PR 13RT |
100 | HIVDB |
| Bessong (2005) | RESISTANCE mutational analysis of HIV type 1 subtype C among rural South African drug-naive patients prior to large-scale availability of antiretrovirals | AIDS Res. Hum. Retroviruses 22 (12), 1306-1312 (2006) | 1e-177 | 70 35PR 35RT |
70 35PR 35RT |
100 | HIVDB |
| Bessong (2010) | Analysis of pol integrase gene sequences of HIV-1 infected treatment naive individuals in the Limpopo province of South Africa | Unpublished | 1e-164 | |
89 89IN |
0 | Pending |
| Bibollet-Ruche (1996) | GENETIC diversity of simian immunodeficiency viruses from West African green monkeys: evidence of multiple genotypes within populations from the same geographical locale | J. Virol. 71 (1), 307-313 (1997) | 1e-30 | |
10 10IN |
0 | Gene fragment(s) |
| Bibollet-Ruche (2004) | NEW simian immunodeficiency virus infecting De Brazza's monkeys (Cercopithecus neglectus): evidence for a cercopithecus monkey virus clade | J. Virol. 78 (14), 7748-7762 (2004) | 0 | 4 4PR 4RT 4IN |
11 4PR 6RT 11IN |
36 | HIVDB |
| Bibollet-Ruche (2005) | COMPLETE genome analysis of one of the earliest SIVcpzPtt strains from Gabon (SIVcpzGAB2) | AIDS Res. Hum. Retroviruses 20 (12), 1377-1381 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Bibollet-Ruche (2005) | GENETIC characterization of accessory genes from human immunodeficiency viruses type 1 group O | Unpublished | 3e-08 | |
14 14IN |
0 | Gene fragment(s) |
| Biesinger (2007) | CHANGES in simian immunodeficiency virus reverse transcriptase alleles that appear during infection of macaques enhance infectivity and replication in CD4(+) T cells | Virology 370 (1), 184-193 (2008) | 0 | |
8 8RT |
0 | Case report(s) / study subset |
| Binverted question markelec (2000) | HIGH levels of drug-resistant human immunodeficiency virus variants in patients exhibiting increasing CD4+ T cell counts despite virologic failure of protease inhibitor-containing antiretroviral combination therapy | J. Infect. Dis. 181 (5), 1808-1812 (2000) | 1e-128 | 100 100PR |
100 100PR |
100 | HIVDB |
| Blankson (2007) | ISOLATION and Characterization of Replication-Competent HIV-1 from a Subset of Elite Suppressors | J. Virol. 81 (5), 2508-2518 (2007) | 0 | |
6 4PR 6RT 6IN |
0 | Case report(s) / study subset |
| Blankson (2009) | HIV-1 Evolution Following Transmission to an HLA-B*5801 Positive Subject | J Infect Dis. 2009 Dec 15;200(12):1820-4. | 0 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Bleiber (2001) | INDIVIDUAL contributions of mutant protease and reverse transcriptase to viral infectivity, replication, and protein maturation of antiretroviral drug-resistant human immunodeficiency virus type 1 | J. Virol. 75 (7), 3291-3300 (2001) | 1e-112 | |
21 15PR 15RT |
0 | Case report(s) / study subset |
| Blick (2006) | THE Probable Source of Both the Primary Multidrug-Resistant (MDR) HIV-1 Strain Found in a Patient with Rapid Progression to AIDS and a Second Recombinant MDR Strain Found in a Chronically HIV-1-Infected Patient | J. Infect. Dis. 195 (9), 1250-1259 (2007) | 1e-163 | |
13 1PR 13RT |
0 | Case report(s) / study subset |
| Bobkov (2004) | DIVERSITY of HIV-1 Subtype A and CRF03_AB Protease in Eastern Europe: Selection of the V77I Variant Followed by Its Rapid Spread in IDU Populations | Unpublished | 5e-40 | 27 27PR |
30 30PR |
90 | HIVDB |
| Bodelle (2004) | IDENTIFICATION and Genomic Sequence of an HIV Type 1 Group N Isolate from Cameroon | AIDS Res. Hum. Retroviruses 20 (8), 902-908 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Boeri (2003) | EVOLUTIONARY characteristics of HIV-1 variants resistant to protease inhibitors in the absence of drug-selective pressure | AIDS Res. Hum. Retroviruses (2003) In press | 0 | |
18 18PR 18RT |
0 | Case report(s) / study subset |
| Bogh (2001) | INVESTIGATING association between baseline HIV-1 genotypic resistance and virological response among protease in-hibitor-naive patients treated with HAART | Unpublished | 1e-133 | |
180 112PR 68RT |
0 | Unpublished |
| Bolivar (2009) | The Challenge of HIV-1 Genetic Diversity: Discordant CD4+ T-Cell Count and Viral Load in an Untreated Patient Infected With a Subtype F Strain | J. Acquir. Immune Defic. Syndr. 52 (5), 659-661 (2 | 1e-161 | |
1 1IN |
0 | Case report(s) / study subset |
| Bonhoeffer (2008) | Evidence for positive epistasis in HIV-1 | Science 306 (5701), 1547-1550 (2004) | 1e-175 | 8676 8676PR 8676RT |
8676 5624PR 7806RT |
100 | HIVDB |
| Bonhoeffer (2010) | Evidence for positive epistasis in HIV-1 | Science 306 (5701), 1547-1550 (2004) | 9e-49 | 8 8PR 8RT |
8 8PR |
100 | HIVDB |
| Bontell (2011) | Transmitted drug resistance and phylogenetic analysis of HIV CRF01_AE in Northern Vietnam | Infect. Genet. Evol. (2011) In press | 2e-50 | 32 32PR 32RT |
32 32PR |
100 | HIVDB |
| Bontell (2011) | Transmitted drug resistance and phylogenetic analysis of HIV CRF01_AE in Northern Vietnam | Infect. Genet. Evol. (2011) In press | 2e-48 | 1 1PR 1RT |
1 1PR |
100 | HIVDB |
| Bonura (2010) | Transmission of drug-resistant HIV-1 strains in HAART-naive patients: a five-year retrospective study in Sicily, Italy | Unpublished | 0 | 109 109PR 109RT |
109 41PR 109RT |
100 | HIVDB |
| Bouchard (2004) | HIV Type 1 Drug Resistance among Naive Patients from Venezuela | AIDS Res. Hum. Retroviruses 23 (3), 482-485 (2007) | 1e-140 | 37 17PR 20RT |
37 17PR 20RT |
100 | HIVDB |
| Bourara (2007) | TARGET cell APOBEC3C can induce limited G-to-A mutation in HIV-1 | PLoS Pathog. 3 (10), 1477-1485 (2007) | 4e-52 | |
2 2PR |
0 | Case report(s) / study subset |
| Bouzeghoub (2005) | HIGH Diversity of HIV Type 1 in Algeria | AIDS Res. Hum. Retroviruses 22 (4), 367-372 (2006) | 1e-149 | 248 133PR 116RT |
248 132PR 116RT |
100 | HIVDB |
| Bouzeghoub (2008) | FIRST Observation of HIV Type 1 Drug Resistance Mutations in Algeria | AIDS Res. Hum. Retroviruses 24 (11), 1467-1473 (2008) | 1e-148 | |
37 16PR 21RT |
0 | Pending |
| Brachtel (2002) | DEMONSTRATION of de Novo HIV Type 1 Production by Detection of Multiply Spliced and Unspliced HIV Type 1 RNA in Paraffin-Embedded Tonsils | AIDS Res. Hum. Retroviruses 18 (11), 785-790 (2002) | 1e-62 | |
43 43PR |
0 | Evolution/quasispecies study |
| Bradshaw (2007) | NOVEL Drug Resistance Pattern Associated with the Mutations K70G and M184V in Human Immunodeficiency Virus Type 1 Reverse Transcriptase | Antimicrob. Agents Chemother. 51 (12), 4489-4491 (2007) | 0 | 9 4PR 9RT |
9 9RT |
100 | HIVDB |
| Brandin (2003) | POL Gene Sequence Variation in Swedish HIV-2 Patients Failing Antiretroviral Therapy | AIDS Res. Hum. Retroviruses 19 (7), 543-550 (2003) | 3e-97 | 30 30PR 30RT |
30 30PR 30RT |
100 | HIVDB |
| Brann (2006) | FUNCTIONAL Correlation between a Novel Amino Acid Insertion at Codon 19 in the Protease of Human Immunodeficiency Virus Type 1 and Polymorphism in the p1/p6 Gag Cleavage Site in Drug Resistance and Replication Fitness | J. Virol. 80 (12), 6136-6145 (2006) | 2e-49 | |
1 1PR |
0 | Case report(s) / study subset |
| Brehm (2011) | Failure of initial therapy with two nucleosides and efavirenz is not associated with early emergence of mutations in the C-terminus of HIV-1 reverse transcriptase | J. Acquir. Immune Defic. Syndr. 56 (4), 344-348 (2 | 0 | |
106 106RT |
0 | Pending |
| Brennan (1997) | GENETIC variation in human immunodeficiency virus type 2: identification of a unique variant from human plasma | AIDS Res. Hum. Retroviruses 13 (5), 401-404 (1997) | 0.27 | 1 1PR 1RT 1IN |
1 1RT |
100 | HIVDB |
| Brennan (2007) | HIV-1 Strains Identified in Brazilian Blood Donors: Significant Prevalence of B/F1 Recombinants | AIDS Res. Hum. Retroviruses 23 (11), 1434-1441 (2007) | 1e-167 | 82 82IN |
85 85IN |
96 | HIVDB |
| Brennan (2009) | The prevalence of diverse HIV-1 strains was stable in Cameroonian blood donors from 1996 to 2004 | J. Acquir. Immune Defic. Syndr. 49 (4), 432-439 (2 | 1e-166 | 572 572IN |
573 573IN |
99 | HIVDB |
| Brennan (2009) | Identification of HIV-1 Non-B Subtypes and Antiretroviral Drug Resistant Strains in United States Blood Donors | Unpublished | 0 | 65 62PR 62RT 3IN |
65 43PR 62RT 3IN |
100 | HIVDB |
| Brennan (2011) | Expanded Evaluation of Blood Donors in the United States for HIV-1 Non-B Subtypes and Antiretroviral Drug Resistant Strains: 2005-2007 | Unpublished | 0 | |
25 8PR 25RT |
0 | Pending |
| Brenner (2006) | HIV-1 subtype C viruses rapidly develop K65R resistance to tenofovir in cell culture | AIDS 20 (9), F9-F13 (2006) | 0 | |
5 3PR 5RT |
0 | Pending |
| Brenner (2006) | HIGH Rates of Forward Transmission Events after Acute/Early HIV-1 Infection | J. Infect. Dis. 195 (7), 951-959 (2007) | 0 | |
24 22PR 12RT |
0 | Case report(s) / study subset |
| Brenner (2010) | HIV-1 Integrase Genotypic Analysis: Implications in the Study of HIV-1 Drug Resistance and Subtype Diversification | Antimicrob. Agents Chemother. (2010) In press | 0 | |
8 7RT 8IN |
0 | Unpublished |
| Brenner (2011) | Subtype diversity associated with the development of HIV-1 resistance to integrase inhibitors | J. Med. Virol. 83 (5), 751-759 (2011) | 1e-167 | |
149 149IN |
0 | Pending |
| Brenner (2011) | Spread of HIV-1 Drug-Resistant Sub-epidemics | Unpublished | 0 | |
1 1RT |
0 | Unpublished |
| Brigido (2005) | SHORT Communication: Molecular Characteristics of HIV Type 1 Circulating in Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 21 (7), 673-682 (2005) | 0 | |
174 68PR 106RT |
0 | Pending |
| Brigido (2008) | HIV type 1 subtype C and CB Pol recombinants prevail at the cities with the highest AIDS prevalence rate in Brazil | AIDS Res. Hum. Retroviruses 23 (12), 1579-1586 (2007) | 0 | 149 103PR 99RT |
149 65PR 97RT |
100 | HIVDB |
| Brigido (2010) | Southern Brazil HIV Type 1 C Expansion into the State of Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 27 (3), 339-344 (2011) | 0 | |
247 192PR 69RT 15IN |
0 | Pending |
| Brindeiro (1999) | SEQUENCE diversity of the reverse transcriptase of human immunodeficiency virus type-1 from Brazilian untreated individuals | Antimicrob. Agents Chemother. (1999) In press | 2e-91 | 18 18RT |
18 18RT |
100 | HIVDB |
| Brindeiro (2003) | BRAZILIAN Network for HIV Drug Resistance Surveillance (HIV-BResNet): a survey of chronically infected individuals | AIDS 17 (7), 1063-1069 (2003) | 1e-145 | 350 199PR 191RT |
357 199PR 199RT |
98 | HIVDB |
| Briones (2000) | DYNAMICS of dominance of a dipeptide insertion in reverse transcriptase of HIV-1 from patients subjected to prolonged therapy | Virus Res. 66 (1), 13-26 (2000) | 1e-128 | |
186 180PR 186RT |
0 | Evolution/quasispecies study |
| Briones (2003) | MEMORY in retroviral quasispecies: experimental evidence and theoretical model for human immunodeficiency virus | J. Mol. Biol. 331 (1), 213-229 (2003) | 1e-126 | |
15 15PR 15RT |
0 | Evolution/quasispecies study |
| Brown (2009) | Phylogenetic reconstruction of transmission events from individuals with acute HIV infection: toward more-rigorous epidemiological definitions | J. Infect. Dis. 199 (3), 427-431 (2009) | 1e-172 | |
160 133PR 77RT |
0 | Evolution/quasispecies study |
| Brown (1999) | SEQUENCE clusters in human immunodeficiency virus type 1 reverse transcriptase are associated with subsequent virological response to antiretroviral therapy | J. Infect. Dis. 180 (4), 1043-1049 (1999) | 1e-130 | |
55 55PR 55RT |
0 | DNAChip |
| Brown (2005) | BIOLOGIC and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines | J. Virol. 79 (10), 6089-6101 (2005) | 0 | 21 21PR 21RT 21IN |
21 21PR 21RT 21IN |
100 | HIVDB |
| Brumme (2007) | EVIDENCE of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1 | PLoS Pathog. 3 (7), E94 (2007) | 0 | 811 811PR 594RT |
811 773PR 594RT |
100 | HIVDB |
| Brumme (2009) | HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins | PLoS ONE 4 (8), E6687 (2009) | 0 | 1139 543PR 537RT 975IN |
1285 415PR 691RT 1129IN |
88 | HIVDB |
| Bruselles (2009) | Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV BF recombinant associated with a fatal primary infection | AIDS Res Hum Retroviruses. 2009 Sep;25(9):937-42. | 0 | |
1 1PR 1RT 1IN |
0 | Pending |
| Buckton (2008) | DEVELOPMENT and optimization of an internally controlled dried blood spot assay for surveillance of human immunodeficiency virus type-1 drug resistance | J. Antimicrob. Chemother. 62 (6), 1191-1198 (2008) | 0 | |
17 17RT |
0 | Case report(s) / study subset |
| Bulgheroni (2001) | UNUSUAL codon 69 insertions: influence on human immunodeficiency virus type 1 reverse transcriptase drug susceptibility | J. Clin. Virol. 29 (1), 27-32 (2004) | 4e-77 | |
3 3RT |
0 | Pending |
| Buonaguro (2006) | SCREENING of HIV-1 isolates by reverse heteroduplex mobility assay and identification of non-B subtypes in Italy | J. Acquir. Immune Defic. Syndr. 37 (2), 1295-1306 (2004) | 0 | |
3 3RT 3IN |
0 | Case report(s) / study subset |
| Burda (2005) | HIV-1 CRF09_cpx circulates in the North West Province of Cameroon where CRF02_AG infections predominate and recombinant strains are common | AIDS Res. Hum. Retroviruses 20 (12), 1358-1363 (2004) | 2e-50 | |
17 17PR |
0 | Sequence quality |
| Burda (2010) | HIV-1 reverse transcriptase drug-resistance mutations in chronically infected individuals receiving or naive to HAART in Cameroon | J. Med. Virol. 82 (2), 187-196 (2010) | 1e-156 | 1 1RT |
1 1RT |
100 | HIVDB |
| Burkala (2005) | COMPARTMENTALIZATION of HIV-1 in the central nervous system: role of the choroid plexus | AIDS 19 (7), 675-684 (2005) | 1e-152 | |
140 123PR 140RT |
0 | Evolution/quasispecies study |
| Burns (2005) | SEQUENCE variability of the integrase protein from a diverse collection of HIV type 1 isolates representing several subtypes | AIDS Res. Hum. Retroviruses 18 (14), 1031-1041 (2002) | 1e-159 | 21 21IN |
21 21IN |
100 | HIVDB |
| Bussmann (2005) | HIV-1 subtype C drug-resistance background among ARV-naive adults in Botswana | Unpublished | 0 | 71 71PR 71RT |
71 64PR 71RT |
100 | HIVDB |
| Buzon (2011) | Combined antiretroviral therapy and immune pressure lead to in vivo HIV-1 recombination with ancestral viral genomes | J. Acquir. Immune Defic. Syndr. (2011) In press | 4e-50 | |
8 8PR |
0 | Evolution/quasispecies study |
| Bychenko (2009) | Isolation and characterization of new HIV-1 subtype A1 strain from Russia, envelope proteins variability analysis | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Byrn (2006) | HIV-1 in semen: an isolated virus reservoir | Lancet 350 (9085), 1141 (1997) | 4e-52 | |
35 35PR |
0 | Evolution/quasispecies study |
| Cabana (1999) | EMERGENCE and genetic evolution of HIV-1 variants with mutations conferring resistance to multiple reverse transcriptase and protease inhibitors | J. Med. Virol. 59 (4), 480-490 (1999) | 1e-125 | 92 54PR 38RT |
92 54PR 38RT |
100 | HIVDB |
| Cabrera (2008) | RALTEGRAVIR Susceptibility and Fitness Progression of HIV-1 Integrase in Patients on Long-Term Antiretroviral Therapy | Unpublished | 1e-167 | 135 135IN |
135 135IN |
100 | HIVDB |
| Calazans (2003) | LOW Accumulation of L90M in Protease from Subtype F HIV-1 with Resistance to Protease Inhibitors Is Caused by the L89M Polymorphism | J. Infect. Dis. 191 (11), 1961-1970 (2005) | 1e-126 | 51 51PR 51RT |
52 52PR 51RT |
98 | HIVDB |
| Cali (2004) | EVIDENCE for host-driven selection of the HIV type 1 vpr gene in vivo during HIV disease progression in a transfusion-acquired cohort | AIDS Res. Hum. Retroviruses 21 (8), 728-733 (2005) | 0 | |
15 15PR 15RT 15IN |
0 | Case report(s) / study subset |
| Calugi (2006) | ENTIRE Genome of a Strain of Human Immunodeficiency Virus Type 1 with a Deletion of nef That Was Recovered 20 Years after Primary Infection: Large Pool of Proviruses with Deletions of env | J. Virol. 80 (23), 11892-11896 (2006) | 0 | |
1 1RT 1IN |
0 | Sequence quality |
| Calvez (2002) | IMPACT of stavudine phenotype and thymidine analogues mutations on viral response to stavudine plus lamivudine in ALTIS 2 ANRS trial | Antivir. Ther. (Lond.) 7 (3), 211-218 (2002) | 2e-94 | |
26 26RT |
0 | ARV Rx and/or other data are N/A |
| Candotti (1999) | AIDS in an HIV-seronegative Ghanaian woman with intersubtype A/G recombinant HIV-1 infection | J. Med. Virol. 62 (1), 1-8 (2000) | 1e-165 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Canducci (2008) | DYNAMIC patterns of Human immunodeficiency virus type 1 (HIV-1) integrase gene evolution in patients failing Raltegravir based salvage therapies | Unpublished | 1e-154 | 37 37IN |
37 37IN |
100 | HIVDB |
| Cao (2007) | HIV subtype distribution in a cohort of HIV infected Ugandans: clinical implications | Unpublished | 0 | 46 45PR 46RT |
46 26PR 46RT |
100 | HIVDB |
| Cardoso (2009) | HIV-1 pol phylogenetic diversity and antiretroviral resistance mutations in treatment naive patients from Central West Brazil | J. Clin. Virol. 46 (2), 134-139 (2009) | 1e-145 | 76 76PR 76RT |
76 76PR 8RT |
100 | HIVDB |
| Cardoso (2009) | High level of multidrug resistance mutations in HIV type 1 pol gene and resistance-associated mutations to enfuvirtide (T-20) among antiretroviral-experienced patients from central Brazil | AIDS Res. Hum. Retroviruses 25 (10), 943-950 (2009 | 1e-145 | 25 25PR 25RT |
25 25PR 1RT |
100 | HIVDB |
| Cardoso (2010) | HIV-1 primary and secondary antiretroviral drug resistance and genetic diversity among pregnant women from central Brazil | J. Med. Virol. 82 (3), 351-357 (2010) | 1e-144 | |
62 62PR 4RT |
0 | Pending |
| Cardoso (2011) | Molecular Characteristics of HIV Type 1 Infection Among Prisoners from Central Western Brazil | AIDS Res. Hum. Retroviruses (2011) In press | 2e-52 | |
18 18PR |
0 | Pending |
| Caride (2000) | DRUG-RESISTANT reverse transcriptase genotyping and phenotyping of B and non-B subtypes (F and A) of human immunodeficiency virus type I found in Brazilian patients failing HAART | Virology 275 (1), 107-115 (2000) | 5e-89 | |
14 14RT |
0 | ARV Rx and/or other data are N/A |
| Caride (2001) | GENOTYPIC and phenotypic evidence of different drug-resistance mutation patterns between B and non-B subtype isolates of human immunodeficiency virus type 1 found in Brazilian patients failing HAART | Virus Genes 23 (2), 193-202 (2001) | 1e-123 | 14 14PR |
28 28PR |
50 | HIVDB |
| Carneiro-Proietti (1997) | DIRECT Submission | Submitted (14-NOV-1996) Lab. Virus, Dept. Microbiologia, Uni | 1e-128 | |
1 1PR |
0 | Case report(s) / study subset |
| Caron (2008) | HUMAN immunodeficiency virus type 1 seroprevalence and antiretroviral drug resistance-associated mutations in miners in Gabon, central Africa | AIDS Res. Hum. Retroviruses 24 (9), 1225-1228 (2008) | 2e-50 | 4 4PR |
4 4PR |
100 | HIVDB |
| Carr (1996) | FULL-LENGTH sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand | J. Virol. 70 (9), 5935-5943 (1996) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Carr (1998) | FULL genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants | Virology 247 (1), 22-31 (1998) | 1e-164 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Carr (1999) | CHARACTERIZATION of subtype A HIV-1 from Africa by full genome sequencing | AIDS 13 (14), 1819-1826 (1999) | 1e-166 | 7 7PR 7RT 7IN |
7 7PR 7RT 7IN |
100 | HIVDB |
| Carr (1999) | DIRECT Submission | Submitted (07-JUL-1998) Molecular Epidemiology, Henry M. Jac | 1e-164 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Carr (2001) | THE AG Recombinant IbNG and Novel Strains of Group M HIV-1 are Common in Cameroon | Virology (2001) In press | 1e-166 | 7 7PR 7RT 7IN |
7 7PR 7RT 7IN |
100 | HIVDB |
| Carr (2001) | DIVERSE BF recombinants have spread widely since the introduction of HIV-1 into South America | AIDS 15 (15), F41-F47 (2001) | 1e-165 | 21 21PR 21RT 21IN |
21 21PR 21RT 21IN |
100 | HIVDB |
| Carr (2004) | OUTBREAK of a West African recombinant of HIV-1 in Tashkent, Uzbekistan | J. Acquir. Immune Defic. Syndr. 39 (5), 570-575 (2005) | 0 | 245 233PR 232RT 12IN |
246 242PR 241RT 12IN |
99 | HIVDB |
| Carr (2005) | HIV Subtype and Drug Resistance Patterns among Drug Naive Persons in Jos, Nigeria | Unpublished | 0 | 23 23PR 23RT 7IN |
23 9PR 23RT 7IN |
100 | HIVDB |
| Carr (2006) | FIRST report of an HIV-1 triple recombinant of subtypes B, C and F in Buenos Aires, Argentina | Unpublished | 0 | 10 10PR 10RT 10IN |
10 9PR 10RT 10IN |
100 | HIVDB |
| Carr (2006) | HIGH Genetic Complexity of HIV-1 in low-prevalence, rural regions of Cameroon | Unpublished | 0 | 2 2PR 2RT 2IN |
2 1PR 2RT 2IN |
100 | HIVDB |
| Carr (2008) | HIV-1 in the Caribbean is Dominated by Subtype B | PLoS One. 2009;4(3):e4814. Epub 2009 Mar 12. | 1e-139 | |
62 59PR 27RT |
0 | Pending |
| Carr (2008) | IDENTIFICATION of CRF17_BF in Four South American Countries | Unpublished | 0 | |
6 1PR 6RT 6IN |
0 | Pending |
| Carr (2008) | HIV-1 Epidemic in the Caribbean is Dominated by Subtype B | Unpublished | 0 | |
15 10PR 15RT 15IN |
0 | Pending |
| Carr (2010) | HIV-1 Recombinants with Multiple Parental Strains in Low-Prevalence, Remote Regions of Cameroon | Retrovirology. 2010 Apr 28;7:39. | 0 | 24 24PR 23RT 24IN |
24 24RT 24IN |
100 | HIVDB |
| Carrera (2010) | Identification of unusual and novel HIV type 1 spliced transcripts generated in vivo | AIDS Res. Hum. Retroviruses 26 (7), 815-820 (2010) | 0.002 | |
1 1IN |
0 | Gene fragment(s) |
| Carrion (2002) | CIRCULATING Recombinant Form CRF02_AG in South America | AIDS Res. Hum. Retroviruses 19 (4), 329-332 (2003) | 1e-163 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Carrion (2004) | DOCUMENTATION of subtype C HIV Type 1 strains in Argentina, Paraguay, and Uruguay | AIDS Res. Hum. Retroviruses 20 (9), 1022-1025 (2004) | 0 | 2 2PR 2RT 2IN |
7 7PR 7RT 2IN |
28 | HIVDB |
| Carrion (2009) | Molecular characterization of the human immunodeficiency virus type 1 among children in Lima, Peru | AIDS Res. Hum. Retroviruses (2009) In press | 1e-173 | |
2 2RT |
0 | Pending |
| Carvalho (2010) | Primary Drug Resistance And HIV-1 Phylogenetic Diversity In North Brazil, Tocantins State | Unpublished | 1e-144 | 30 30PR 30RT |
31 31PR 1RT |
96 | HIVDB |
| Carvalho (2010) | Secondary Drug Resistance And HIV-1 Phylogenetic Diversity In North Brazil, Tocantins State | Unpublished | 4e-51 | |
5 5PR |
0 | Unpublished |
| Carvalho (2011) | Moderate prevalence of primary drug resistance and interiorization of HIV-1 subtype C in the inland north state of Tocantins, Brazil | AIDS Res. Hum. Retroviruses (2011) In press | 3e-52 | 9 9PR 9RT |
9 9PR |
100 | HIVDB |
| Casado (2003) | NEAR Full-Length Genome Characterization of an HIV Type 1 CRF05_DF Virus from Spain | AIDS Res. Hum. Retroviruses 19 (8), 719-725 (2003) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Casado (2005) | DIRECT Submission | Submitted (18-JAN-2005) Patogenia Viral, Instituto de Salud | 1e-126 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Casado (2007) | IDENTIFICATION of a novel HIV-1 circulating ADG intersubtype recombinant form (CRF19_cpx) in Cuba | J. Acquir. Immune Defic. Syndr. 40 (5), 532-537 (2005) | 0 | 2 2PR 2RT 2IN |
2 1PR 2RT 2IN |
100 | HIVDB |
| Castelbranco (2010) | Frequency of Primary Resistance to Antiretroviral Drugs and Genetic Variability of HIV-1 Among Infected Pregnant Women Recently Diagnosed in Luanda-Angola | AIDS Res. Hum. Retroviruses 26 (12), 1313-1316 (20 | 2e-49 | 2 2PR 2RT |
2 2PR |
100 | HIVDB |
| Castillo (2009) | Surveillance of HIV Type 1 Drug Resistance among Naive Patients from Venezuela | AIDS Res. Hum. Retroviruses (2009) In press | 1e-150 | 89 54PR 35RT |
89 54PR 35RT |
100 | HIVDB |
| Castro (2002) | MOLECULAR epidemiology of HIV-1 in Venezuela: high prevalence of HIV-1 subtype B and identification of a B/F recombinant infection | J. Acquir. Immune Defic. Syndr. 32 (3), 338-344 (2003) | 7e-77 | |
2 1PR 1RT |
0 | Case report(s) / study subset |
| Castro (2004) | BODY Compartments Follow-up & HIV-1 Mosaic Genome Definition. E7109254 | (in) EXTENDED ABSTRACT BOOK, XV INTERNATIONAL AIDS CONFERENC | 1e-135 | |
4 4RT |
0 | Case report(s) / study subset |
| Castro (2004) | RESISTANCE mutations and molecular characterization of HIV-1 isolates from Venezuelan patients with virological failure | Unpublished | 1e-136 | |
41 20PR 21RT |
0 | Pending |
| Castro (2009) | HIV-1 transmission network of 103N resistance mutation in Southwest Switzerland | AIDS Res Hum Retroviruses. 2010 Sep 23. [Epub ahead of print | 0 | |
19 14PR 10RT |
0 | Evolution/quasispecies study |
| Caumont (2001) | SEQUENCE analysis of Env C2/V3, Gag p17/p24, and Prot regions of 25 HIV-1 isolates from Ho Chi Minh City, Viet Nam | Unpublished | 9e-98 | 26 24PR 2RT |
27 25PR 2RT |
96 | HIVDB |
| Ceballos (2009) | HIV dual infection with subtype B and BF recombinants in Argentina | Unpublished | 1e-146 | |
45 38PR 11RT |
0 | Pending |
| Ceccherini-Silberstein (2005) | IDENTIFICATION of the minimal conserved structure of HIV-1 protease in the presence and absence of drug pressure | AIDS 18 (12), F11-F19 (2004) | 0 | |
477 242PR 477RT |
0 | Pending |
| Ceccherini-Silberstein (2006) | HIGH sequence conservation of human immunodeficiency virus type 1 reverse transcriptase under drug pressure despite the continuous appearance of mutations | J. Virol. 79 (16), 10718-10729 (2005) | 0 | |
178 123PR 178RT |
0 | Pending |
| Ceccherini-Silberstein (2007) | IMPACT of HIV-1 Reverse Transcriptase Polymorphism F214L on Virological Response to Thymidine Analogue-Based Regimens in Antiretroviral Therapy (ART)-Naive and ART-Experienced Patients | J. Infect. Dis. 196 (8), 1180-1190 (2007) | 0 | |
275 255PR 88RT |
0 | Pending |
| Ceccherini-Silberstein (2007) | CHARACTERIZATION and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of resistance to nonnucleoside inhibitors | J. Virol. 81 (20), 11507-11519 (2007) | 0 | |
75 44PR 75RT |
0 | ARV Rx and/or other data are N/A |
| Ceccherini-Silberstein (2007) | Impact of HIV-1 reverse transcriptase polymorphism F214L on virological response to thymidine analogue-based regimens in antiretroviral therapy (ART)-naive and ART-experienced patients | J. Infect. Dis. 196 (8), 1180-1190 (2007) | 2e-48 | |
7 7PR |
0 | Pending |
| Ceccherini-Silberstein (2010) | Secondary Integrase Resistance Mutations Found in HIV-1 Minority Quasispecies in Integrase Therapy-Naive Patients Have Little or No Effect on Susceptibility to Integrase Inhibitors | Antimicrob. Agents Chemother. 54 (9), 3938-3948 (2 | 0 | |
457 429RT 457IN |
0 | Evolution/quasispecies study |
| Cenci (1997) | SELECTED nucleotide sequence of the pol gene of the monocytotropic strain HIV type 1 BaL | AIDS Res. Hum. Retroviruses 13 (7), 629-632 (1997) | 5e-49 | |
1 1RT |
0 | Case report(s) / study subset |
| Cenci (2003) | LOW Intra-Host Diversity in HIV-1 Protease Gene in Untreated Primary Infection: a Crucial Role for Purifying Selection | Unpublished | 1e-126 | |
67 67PR |
0 | Unpublished |
| Cenci (2004) | HIV-1 pol genotype divergence in the plasma and cerebrospinal fluid (CSF) of untreated patients in acute and chronic infection | Unpublished | 1e-108 | |
58 44PR 14RT |
0 | Unpublished |
| Chaix (2003) | STABLE prevalence of genotypic drug resistance mutations but increase in non-B virus among patients with HIV-1 primary infection in France | Unpublished | 1e-116 | 244 244RT |
244 244RT |
100 | HIVDB |
| Chakrabarti (1999) | SEQUENCE of simian immunodeficiency virus from macaque and its relationship to other human and simian retroviruses | Nature 328 (6130), 543-547 (1987) | 1e-98 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Chakrabarti (2011) | HIV-1 recombinants among Maipur IDUs | Unpublished | 0 | |
1 1RT 1IN |
0 | Unpublished |
| Chakraborty (2003) | FAILURE to detect human immunodeficiency virus type 1 superinfection in 28 HIV-seroconcordant individuals with high risk of reexposure to the virus | AIDS Res. Hum. Retroviruses 20 (9), 1026-1031 (2004) | 0 | |
162 81PR 81RT |
0 | Evolution/quasispecies study |
| Chakraborty (2003) | CAN HIV-1 superinfection compromise antiretroviral therapy? | AIDS 18 (1), 132-134 (2004) | 2e-87 | |
8 8RT |
0 | Case report(s) / study subset |
| Chaloin (2004) | ANTIVIRAL activity of reverse trancriptase inhibitors with different HIV strains and isolates | Unpublished | 0 | |
14 14RT 8IN |
0 | ARV Rx and/or other data are N/A |
| Chamberland (2007) | CHARACTERIZATION of drug resistance in a cohort of subjects on antiretroviral therapy infected with HIV-1 CRF02_AG and AGK subtypes in Mali and Burkina Faso | Unpublished | 0 | 88 88PR 88RT |
88 11PR 88RT |
100 | HIVDB |
| Chamberland (2011) | HIV-1 primary drug resistance prevalence in Cotonou, Benin | Unpublished | 0 | 127 127PR 127RT |
127 6PR 127RT |
100 | HIVDB |
| Chang (2006) | MOLECULAR Epidemiology of HIV Type 1 Subtypes in Taiwan: Outbreak of HIV Type 1 CRF07)BC Infection in Intravenous Drug Users | AIDS Res. Hum. Retroviruses 22 (11), 1055-1066 (2006) | 1e-145 | 152 152PR 152RT |
152 128PR 146RT |
100 | HIVDB |
| Chang (2008) | Molecular Epidemiology of HIV Type 1 Subtypes in Taiwan: Outbreak of HIV Type 1 CRF07_BC Infection in Intravenous Drug Users | Unpublished | 5e-49 | 3 3PR 3RT |
3 3PR |
100 | HIVDB |
| Chang (2000) | DIFFERENTIAL stability of the mRNA secondary structures in the frameshift site of various HIV type 1 viruses | AIDS Res. Hum. Retroviruses 15 (17), 1591-1596 (1999) | 1e-163 | |
5 5PR 5RT 5IN |
0 | Case report(s) / study subset |
| Chang (2000) | SEQUENCE features downstream of the primer-binding site of HIV type 1 subtype E shared by subtype G and a subset of subtype A | AIDS Res. Hum. Retroviruses 15 (18), 1703-1706 (1999) | 1e-163 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Chantratita (1999) | HIV-1 resistant to antiretroviral drugs in Thailand | Unpublished | 1e-128 | |
722 342PR 469RT |
0 | ARV Rx and/or other data are N/A |
| Chaplin (2011) | Impact of HIV Type 1 Subtype on Drug Resistance Mutations in Nigerian Patients Failing First-Line Therapy | AIDS Res. Hum. Retroviruses 27 (1), 71-80 (2011) | 1e-168 | 2 2PR 2RT |
2 2RT |
100 | HIVDB |
| Charpentier (2009) | Prevalence of HIV-1 drug resistance in HIV-1 infected patients treated in Douala, Cameroon | Unpublished | 0 | |
56 1PR 56RT |
0 | Pending |
| Charpentier (2011) | High prevalence of antiretroviral drug resistance among HIV-1-untreated patients in Guinea-Conakry and in Niger | Unpublished | 1e-154 | 29 29RT |
29 29RT |
100 | HIVDB |
| Charpentier (2011) | Hot spots of integrase genotypic changes leading to HIV-2 resistance to raltegravir | Unpublished | 1e-100 | |
12 12IN |
0 | Pending |
| Charpentier (2011) | Resistance analyses in highly experienced patients failing raltegravir, etravirine and darunavir/ritonavir regimen | Unpublished | 1e-166 | |
9 9IN |
0 | Pending |
| Chaturbhuj (2010) | Human Immunodeficiency Virus Type 1 Transmitted Drug Resistance Threshold Surveillance among Newly HIV Type-1 diagnosed Drug Naive Clients attending Voluntary Counseling and Testing (VCT) sites in Mumbai, India | Unpublished | 0 | 34 34PR 34RT |
34 34RT |
100 | HIVDB |
| Chen (2010) | Near full-length genomic characterization of a novel HIV-1 CRF07_ BC/CRF08_ BC recombinant strain from Yunnan, China | AIDS Res. Hum. Retroviruses (2010) In press | 0 | |
1 1RT 1IN |
0 | Pending |
| Chen (1996) | GENETIC characterization of new West African simian immunodeficiency virus SIVsm: geographic clustering of household-derived SIV strains with human immunodeficiency virus type 2 subtypes and genetically diverse viruses from a single feral sooty mangabey troop | J. Virol. 70 (6), 3617-3627 (1996) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Cheng (1992) | MOLECULAR characterization of HIV-2 (ROD) protease following PCR cloning from virus infected H9 cells | Adv. Exp. Med. Biol. 312, 83-88 (1992) | 2e-24 | |
1 1PR |
0 | Laboratory/experimental isolate |
| Chin (2006) | INVERSE Relationship between Viral Load and Genotypic Resistance Mutations in Korean Patients with Primary HIV Type 1 Infections | AIDS Res. Hum. Retroviruses 22 (11), 1142-1147 (2006) | 1e-147 | 52 52PR 52RT |
52 49PR 52RT |
100 | HIVDB |
| Chin (2007) | EARLY identification of seronegative human immunodeficiency virus type 1 infection with severe presentation | J. Clin. Microbiol. 45 (5), 1659-1662 (2007) | 1e-143 | |
3 3PR 3RT |
0 | Case report(s) / study subset |
| Chin (2007) | FACTORS Associated with Short-term Clinical Parameters after Genotypic Resistance Assay in Korean Patients with HIV-1 Subtype B Virologic Failure | J Korean Med Sci. 2009 Dec;24(6):1031-7. Epub 2009 Nov 7. | 1e-146 | |
40 23PR 40RT |
0 | Pending |
| Chin (2010) | Comparison of genotypic resistance mutations in treatment-naive HIV type 1-infected patients in Korea and China | AIDS Res. Hum. Retroviruses 26 (2), 217-221 (2010) | 1e-164 | 9 9PR 9RT |
9 6PR 6RT |
100 | HIVDB |
| Chin (2010) | Direct Submission | Submitted (09-APR-2010) Aaron Diamond AIDS Researc | 0 | |
1 1RT 1IN |
0 | Unpublished |
| Cho (2005) | DIRECT Submission | Submitted (26-APR-2005) Microbiology, University of Ulsan Co | 0 | |
1 1PR 1RT 1IN |
0 | HIVDB |
| Cho (2005) | FULL-LENGTH sequences of long-term slow progressor | Unpublished | 0 | |
6 5PR 6RT 6IN |
0 | HIVDB |
| Cho (2006) | VARIATION of vif gene according to progression rate in Korean patients: association with KRG treatment | Unpublished | 0.02 | |
105 105IN |
0 | Gene fragment(s) |
| Cho (2006) | HIV-1 Vif gene | Unpublished | 0.02 | |
75 75IN |
0 | Gene fragment(s) |
| Cho (2008) | HIGH Frequency of Gross Deletions in the 5' LTR and gag Regions in HIV Type 1-Infected Long-Term Survivors Treated with Korean Red Ginseng | AIDS Res. Hum. Retroviruses 24 (2), 181-193 (2008) | 1e-52 | |
18 17PR 1IN |
0 | Case report(s) / study subset |
| Cho (2001) | LONG-TERM intake of Korean red ginseng in HIV-1-infected patients: development of resistance mutation to zidovudine is delayed | Int. Immunopharmacol. 1 (7), 1295-1305 (2001) | 4e-96 | 16 16RT |
37 37RT |
43 | HIVDB |
| Cho (2002) | FREQUENCY of mutations conferring resistance to nucleoside reverse transcriptase inhibitors in human immunodeficiency virus type 1-infected patients in Korea | J. Clin. Microbiol. 40 (4), 1319-1325 (2002) | 1e-118 | 22 22RT |
23 6PR 22RT |
95 | HIVDB |
| Cho (2003) | MOLECULAR epidemiologic study of a human immunodeficiency virus 1 outbreak in haemophiliacs B infected through clotting factor 9 after 1990 | Vox Sang. 92 (2), 113-120 (2007) | 0 | 1 1PR |
186 149PR 161RT |
0 | Evolution/quasispecies study |
| Cho (2005) | FULL sequence of HIV type 1 Korean subtype B in an AIDS case with atypical seroconversion: TAAAA at TATA box | AIDS Res. Hum. Retroviruses 21 (11), 961-964 (2005) | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Cho (2006) | HIGH frequency of grossly deleted nef genes in HIV-1 infected long-term slow progressors treated with Korean red ginseng | Curr. HIV Res. 4 (4), 447-457 (2006) | 0.02 | |
3 3IN |
0 | Case report(s) / study subset |
| Cho (2010) | Molecular epidemiologic study of a human immunodeficiency virus 1 outbreak in haemophiliacs B infected through clotting factor 9 after 1990 | Vox Sang. 92 (2), 113-120 (2007) | 0 | |
6 5PR 6RT 6IN |
0 | Case report(s) / study subset |
| Cho (2010) | Phylogenetic analysis of full-length pol gene from Korean hemophiliacs and plasma donors infected with Korean subclade B of HIV-1 | AIDS Res. Hum. Retroviruses (2010) In press | 0 | |
138 104PR 137RT 138IN |
0 | Evolution/quasispecies study |
| Choi (1997) | HIV type 1 isolate Z321, the strain used to make a therapeutic HIV type 1 immunogen, is intersubtype recombinant | AIDS Res. Hum. Retroviruses 13 (4), 357-361 (1997) | 1e-164 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Choi (2010) | Drug susceptibility of human immunodeficiency virus type 1-derived pseudoviruses from treatment-experienced patients to protease inhibitors and reverse transcriptase inhibitors, using a modified single-round assay | J. Clin. Virol. (2010) In press | 1e-174 | |
5 5PR 3RT |
0 | Case report(s) / study subset |
| Church (2007) | HIV type 1 variants with nevirapine resistance mutations are rarely detected in antiretroviral drug-naive African women with subtypes A, C, and D | AIDS Res. Hum. Retroviruses 23 (6), 764-768 (2007) | 0 | 47 47PR 47RT |
47 7PR 47RT |
100 | HIVDB |
| Church (2009) | Analysis of NVP resistance in Ugandan infants who were HIV-infected despite receiving single dose (SD) nevirapine (NVP) vs. SD NVP plus up to 6-weeks of daily NVP to prevent HIV vertical transmission | Unpublished | 0 | 49 49PR 49RT |
49 15PR 49RT |
100 | HIVDB |
| Ciccozzi (2005) | MOLECULAR Diversity of HIV in Albania | J. Infect. Dis. 192 (3), 475-479 (2005) | 0 | 66 66PR 66RT |
66 63PR 66RT |
100 | HIVDB |
| Ciccozzi (2007) | THE HIV type 1 epidemic in Bulgaria involves multiple subtypes and is sustained by continuous viral inflow from West and East European countries | AIDS Res. Hum. Retroviruses 24 (6), 771-779 (2008) | 1e-143 | 33 33PR 33RT |
33 33RT |
100 | HIVDB |
| Ciccozzi (2010) | Genetic Diversity of HIV-1 in Montenegro | AIDS Res. Hum. Retroviruses (2010) In press | 0 | |
32 13PR 32RT |
0 | Pending |
| Cilla (2001) | MOLECULAR evidence of homosexual transmission of HIV type 2 in Spain | AIDS Res. Hum. Retroviruses 17 (5), 417-422 (2001) | 7e-05 | |
4 4RT |
0 | Case report(s) / study subset |
| Cinque (2001) | EFFECT of genotypic resistance on the virological response to highly active antiretroviral therapy in cerebrospinal fluid | AIDS Res. Hum. Retroviruses 17 (5), 377-383 (2001) | 1e-129 | 33 15PR 18RT |
57 24PR 33RT |
57 | HIVDB |
| Claassen (2009) | Direct Submission | Submitted (16-NOV-2007) NHLS/University of Stellen | 1e-150 | |
119 119RT |
0 | Unpublished |
| Clarke (2005) | REVERSE transcriptase and protease sequences from HIV-1 non-subtype B infected persons in the United Kingdom | Unpublished | 0 | 274 118PR 156RT |
497 334PR 379RT |
55 | HIVDB |
| Clavel (1996) | MOLECULAR cloning and polymorphism of the human immune deficiency virus type 2 | Nature 324 (6098), 691-695 (1986) | 1e-98 | 2 1PR 1RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Cleland (1996) | EVOLUTION of zidovudine resistance-associated genotypes in human immunodeficiency virus type 1-infected patients | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 12 (1), 6-1 | 1e-123 | |
370 370RT |
0 | Gene fragment(s) |
| Clevenbergh (2002) | LONG-TERM virologic outcome in patients infected with multi-nucleoside analogue resistant HIV-1 | Antivir. Ther. (Lond.) (2002) In press | 1e-121 | 24 12PR 12RT |
24 12PR 12RT |
100 | HIVDB |
| Clewley (1998) | A novel simian immunodeficiency virus (SIVdrl) pol sequence from the drill monkey, Mandrillus leucophaeus | J. Virol. 72 (12), 10305-10309 (1998) | 1.1 | 1 1PR 1RT |
1 1RT |
100 | HIVDB |
| Clewley (2001) | DIRECT Submission | Unpublished | 0 | 1 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Cloyd (1990) | SPECTRUM of biological properties of human immunodeficiency virus (HIV-1) isolates | Virology 174 (1), 103-116 (1990) | 1e-164 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Collaco Veras (2011) | Molecular Epidemiology of HIV-1 CRF02_AG in Cameroon and African Patients Living in Italy | Unpublished | 0 | |
52 3PR 52RT |
0 | Unpublished |
| Collman (2000) | V3-INDEPENDENT determinants of macrophage tropism in a primary human immunodeficiency virus type 1 isolate | Unpublished | 1e-163 | 1 1IN |
1 1PR 1RT 1IN |
100 | Laboratory/experimental isolate |
| Colonno (2004) | IDENTIFICATION of I50L as the Signature Atazanavir (ATV)Resistance Mutation in Treatment-Naive HIV-1Infected Patients Receiving ATV-Containing Regimens | J. Infect. Dis. 189 (10), 1802-1810 (2004) | 3e-51 | 12 12PR |
12 12PR |
100 | HIVDB |
| Condra (1996) | GENETIC correlates of in vivo viral resistance to indinavir, a human immunodeficiency virus type 1 protease inhibitor | J. Virol. 70 (12), 8270-8276 (1996) | 1e-130 | 421 421PR |
421 421PR |
100 | HIVDB |
| Cong (2006) | THE Fitness Cost of Mutations Associated with Human Immunodeficiency Virus Type 1 Drug Resistance Is Modulated by Mutational Interactions | J. Virol. 81 (6), 3037-3041 (2007) | 1e-172 | |
4 4RT |
0 | Laboratory/experimental isolate |
| Coovadia (2008) | PERSISTENT Minority K103N Mutations among Women Exposed to Single-Dose Nevirapine and Virologic Response to Nonnucleoside Reverse-Transcriptase Inhibitor-Based Therapy | Clin. Infect. Dis. (2009) In press | 1e-168 | |
99 99RT |
0 | Pending |
| Corbet (1999) | ENV sequences of simian immunodeficiency viruses from chimpanzees in Cameroon are strongly related to those of human immunodeficiency virus group N from the same geographic area | J. Virol. 74 (1), 529-534 (2000) | 1e-147 | 1 1PR 1RT 1IN |
2 1PR 1RT 2IN |
50 | HIVDB |
| Cornelissen (1997) | POL gene diversity of five human immunodeficiency virus type 1 subtypes: evidence for naturally occurring mutations that contribute to drug resistance, limited recombination patterns, and common ancestry for subtypes B and D | J. Virol. 71 (9), 6348-6358 (1997) | 1e-126 | 42 42PR 42RT |
42 42PR 42RT |
100 | HIVDB |
| Cornelissen (2000) | SPREAD of distinct human immunodeficiency virus type 1 AG recombinant lineages in Africa | J. Gen. Virol. 81 (Pt 2), 515-523 (2000) | 2e-86 | 20 20PR 20RT |
21 21PR 21RT |
95 | HIVDB |
| Courgnaud (1992) | GENETIC differences accounting for evolution and pathogenicity of simian immunodeficiency virus from a sooty mangabey monkey after cross-species transmission to a pig-tailed macaque | J. Virol. 66 (1), 414-419 (1992) | 4.2 | 2 2PR 2RT 2IN |
2 2RT |
100 | HIVDB |
| Courgnaud (2001) | CHARACTERIZATION of a novel simian immunodeficiency virus from guereza colobus monkeys (Colobus guereza) in Cameroon: a new lineage in the nonhuman primate lentivirus family | J. Virol. 75 (2), 857-866 (2001) | 1e-76 | 3 1PR 1RT 3IN |
3 1PR 3RT 3IN |
100 | HIVDB |
| Courgnaud (2002) | CHARACTERIZATION of a Novel Simian Immunodeficiency Virus with a vpu Gene from Greater Spot-Nosed Monkeys (Cercopithecus nictitans) Provides New Insights into Simian/Human Immunodeficiency Virus Phylogeny | J. Virol. 76 (16), 8298-8309 (2002) | 4e-97 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Courgnaud (2003) | PARTIAL Molecular Characterization of Two Simian Immunodeficiency Viruses (SIV) from African Colobids: SIVwrc from Western Red Colobus (Piliocolobus badius) and SIVolc from Olive Colobus (Procolobus verus) | J. Virol. 77 (1), 744-748 (2003) | 1e-149 | 5 1PR 2RT 5IN |
5 5RT 5IN |
100 | HIVDB |
| Courgnaud (2003) | IDENTIFICATION of a New Simian Immunodeficiency Virus Lineage with a vpu Gene Present among Different Cercopithecus Monkeys (C. mona, C. cephus, and C. nictitans) from Cameroon | J. Virol. 77 (23), 12523-12534 (2003) | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Couto-Fernandez (2006) | PHYLOGENETIC Analysis of Brazilian HIV Type 1 Subtype D Strains: Tracing the Origin of This Subtype in Brazil | AIDS Res. Hum. Retroviruses 22 (2), 207-211 (2006) | 0 | 5 5IN |
10 3PR 5RT 5IN |
50 | HIVDB |
| Crandall (1999) | PARALLEL evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection | Mol. Biol. Evol. 16 (3), 372-382 (1999) | 1e-121 | |
41 41PR |
0 | Evolution/quasispecies study |
| Crandall (1999) | ADVANCES in understanding the evolution of HIV | AIDS 13, S39-S47 (1999) | 1e-102 | |
49 49PR |
0 | Evolution/quasispecies study |
| Crowell (2003) | OPTIMIZATION of Oligonucleotide Ligation Assay for Detection of Drug Resistance Mutations in Non-Subtype B HIV-1 | Unpublished | 1e-133 | |
18 17PR 18RT |
0 | ARV Rx and/or other data are N/A |
| Cuevas (2010) | Incidence of non-B subtypes of HIV-1 in Galicia, Spain: high frequency and diversity of HIV-1 among men who have sex with men | Euro Surveill. 14 (47) (2009) | 0 | 92 92PR 92RT |
92 41PR 88RT |
100 | HIVDB |
| Cuevas (2009) | HIV-1 transmission cluster with T215D revertant mutation among newly diagnosed patients from the Basque Country, Spain | J. Acquir. Immune Defic. Syndr. 51 (1), 99-103 (20 | 1e-52 | 233 233PR 233RT |
233 233PR |
100 | HIVDB |
| Cuevas (2010) | Biological and genetic characterization of HIV-1 subtype B and non subtype-B transmitted viruses: usefulness for vaccine candidate assessment | AIDS Res Hum Retroviruses. 2010 Sep;26(9):1019-25 | 0 | |
28 7PR 28RT 28IN |
0 | Pending |
| Cunningham (2002) | DEVELOPMENT of resistance mutations in women receiving standard antiretroviral therapy who received intrapartum nevirapine to prevent perinatal human immunodeficiency virus type 1 transmission: A substudy of pediatric AIDS clinical trials group protocol 316 | J. Infect. Dis. 186 (2), 181-188 (2002) | 5e-92 | |
79 79RT |
0 | ARV Rx and/or other data are N/A |
| D'Arrigo (2007) | GP41 Sequence Variability in HIV Type 1 Non-B Subtypes Infected Patients Undergoing Enfuvirtide Pressure | AIDS Res. Hum. Retroviruses 23 (10), 1296-1302 (2007) | 0 | |
3 3RT |
0 | Case report(s) / study subset |
| Damond (2004) | POLYMORPHISM of HIV-2 protease gene and selection of drug resistance mutations in HIV-2 infected patients treated with protease inhibitors | J. Clin. Microbiol. (2004) In press | 5e-25 | |
94 94PR |
0 | Pending |
| Damond (2006) | IDENTIFICATION of a highly divergent HIV type 2 and proposal for a change in HIV type 2 classification | AIDS Res. Hum. Retroviruses 20 (6), 666-672 (2004) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Daniel (1993) | SIMIAN immunodeficiency virus from African green monkeys | J. Virol. 62 (11), 4123-4128 (1988) | 1e-33 | |
1 1RT |
0 | Gene fragment(s) |
| Dash (2007) | EXCEPTIONAL molecular and coreceptor-requirement properties of molecular clones isolated from an Human Immunodeficiency Virus Type-1 subtype-C infection | Retrovirology 5 (1), 25 (2008) | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Dau (2010) | Connection domain mutations in treatment-experienced patients in the OPTIMA trial | J. Acquir. Immune Defic. Syndr. 54 (2), 160-166 (2 | 0 | |
420 106PR 415RT |
0 | Pending |
| Daumer (2010) | Short communication: selection of thymidine analogue resistance mutational patterns in children infected from a common HIV type 1 subtype G source | AIDS Res. Hum. Retroviruses 26 (3), 275-278 (2010) | 1e-166 | |
3 3RT |
0 | Evolution/quasispecies study |
| Dazza (2003) | CHARACTERIZATION of a novel vpu-harboring simian immunodeficiency virus from a Dent's Mona monkey (Cercopithecus mona denti) | J. Virol. 79 (13), 8560-8571 (2005) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| De Arellano (2007) | IMPACT of Ethnicity and HIV Type 1 Subtype on Response to First-Line Antiretroviral Therapy | AIDS Res. Hum. Retroviruses 23 (7), 891-894 (2007) | 1e-134 | |
10 10PR 1RT |
0 | Pending |
| de Baar (2001) | NATURAL residues versus antiretroviral drug-selected mutations in HIV type 1 group O reverse transcriptase and protease related to virological drug failure in vivo | AIDS Res. Hum. Retroviruses 16 (14), 1385-1394 (2000) | 2e-17 | 5 5PR 5RT |
5 5PR 5RT |
100 | HIVDB |
| de Felipe (2011) | Prevalence and resistance mutations of HIV-1 non-B subtypes among immigrants in Southern Spain | Unpublished | 2e-51 | |
48 48PR |
0 | Unpublished |
| De Maio (2008) | MOLECULAR characterization of the vif accessory gene of HIV-1 from perinatally infected children with different rates of disease progression | Unpublished | 0.032 | |
6 6IN |
0 | Gene fragment(s) |
| de Medeiros (2011) | Co-circulation scenario of HIV1 subtypes B, C and CRF31BC in a drug naive population from southernmost Brazil: analysis of primary resistance mutation | Unpublished | 8e-52 | 41 41PR 41RT |
41 41PR |
100 | HIVDB |
| de Mendoza (2005) | RESISTANCE to non-nucleoside reverse transcriptase inhibitors and non-B subtypes are on the rise among recent HIV-1 infections in Spain | Unpublished | 0 | |
20 19PR 20RT |
0 | Case report(s) / study subset |
| de Mendoza (2009) | Changes in drug resistance patterns following the introduction of HIV-1 non-B subtypes in Spain | AIDS Res Hum Retroviruses. 2009 Oct;25(10):967-72 | 0 | |
135 9PR 134RT |
0 | Pending |
| de Mulder (2011) | Drug resistance prevalence and HIV-1 variant characterization in naive and pretreated HIV-1 infected pedriatric population in Madrid, Spain | Unpublished | 0 | |
127 114PR 35RT |
0 | Pending |
| de Oliveira (2008) | HIGH frequency of BF mosaic genomes among HIV-1-infected children from Sao Paulo, Brazil | Arch. Virol. 153 (10), 1799-1806 (2008) | 0 | |
129 64PR 68RT |
0 | Pending |
| De Pasquale (2004) | DIFFERENCES in HIV-1 pol sequences from female genital tract and blood during antiretroviral therapy | Unpublished | 0 | |
39 39PR 39RT |
0 | ARV Rx and/or other data are N/A |
| de Ronde (2001) | ESTABLISHMENT of new transmissible and drug-sensitive human immunodeficiency virus type 1 wild types due to transmission of nucleoside analogue-resistant virus | J. Virol. 75 (2), 595-602 (2001) | 2e-91 | |
8 8RT |
0 | Case report(s) / study subset |
| De Sa-Filho (2008) | HIV Type 1 pol Gene Diversity and Antiretroviral Drug Resistance Mutations in Santos, Brazil | AIDS Res. Hum. Retroviruses (2008) In press | 1e-154 | 83 83PR 83RT |
83 31PR 83RT |
100 | HIVDB |
| de Silva (2010) | HIV-1 subtype distribution in the Gambia and the significant presence of CRF49_cpx, a novel circulating recombinant form | Retrovirology 7 (1), 82 (2010) | 0 | 3 3PR 3RT 3IN |
3 2RT 3IN |
100 | HIVDB |
| Deacon (1995) | GENOMIC structure of an attenuated quasi species of HIV-1 from a blood transfusion donor and recipients | Science 270 (5238), 988-991 (1995) | 1e-161 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Deeks (1999) | NOVEL four-drug salvage treatment regimens after failure of a human immunodeficiency virus type 1 protease inhibitor-containing regimen: antiviral activity and correlation of baseline phenotypic drug susceptibility with virologic outcome | J. Infect. Dis. 179 (6), 1375-1381 (1999) | 1e-127 | 15 15PR 15RT |
16 16PR 16RT |
93 | HIVDB |
| Dehghani (2003) | UNIQUE Pattern of Convergent Envelope Evolution in Simian Immunodeficiency Virus-Infected Rapid Progressor Macaques: Association with CD4-Independent Usage of CCR5 | J. Virol. 77 (11), 6405-6418 (2003) | 1e-101 | |
2 2RT 2IN |
0 | Laboratory/experimental isolate |
| Deho (2008) | Subtype assignment and phylogenetic analysis of HIV type 1 strains in patients from Swaziland | AIDS Res. Hum. Retroviruses 24 (2), 323-325 (2008) | 5e-50 | 12 12PR 12RT |
12 12PR |
100 | HIVDB |
| Delaugerre (2003) | SELECTION of a rare resistance profile in an HIV-1-infected patient exhibiting a failure to an antiretroviral regimen including tenofovir DF | J. Clin. Virol. 32 (3), 241-244 (2005) | 1e-142 | 1 1RT |
1 1RT |
100 | HIVDB |
| Delgado (2001) | ANALYSIS of HIV type 1 protease and reverse transcriptase sequences from Venezuela for drug resistance-associated mutations and subtype classification: a UNAIDS study | AIDS Res. Hum. Retroviruses 17 (8), 753-758 (2001) | 1e-130 | 199 100PR 100RT 1IN |
199 100PR 100RT |
100 | HIVDB |
| Delgado (2002) | IDENTIFICATION of a newly characterized HIV-1 BG intersubtype circulating recombinant form in Galicia, Spain, which exhibits a pseudotype-like virion structure | J. Acquir. Immune Defic. Syndr. 29 (5), 536-543 (2002) | 2e-71 | 9 9PR 9RT 9IN |
9 9PR 9RT |
100 | HIVDB |
| Delgado (2008) | HIGH prevalence of unique recombinant forms of HIV-1 in Ghana: Molecular epidemiology from an antiretroviral resistance study | Unpublished | 0 | 199 199PR 199RT |
199 2PR 199RT |
100 | HIVDB |
| Delgado (2008) | High prevalence of unique recombinant forms of HIV-1 in Ghana: Molecular epidemiology from an antiretroviral resistance study | Unpublished | 1e-47 | 1 1PR 1RT |
1 1PR |
100 | HIVDB |
| Delgado (2010) | Identification of a new HIV-1 BF intersubtype circulating recombinant form (CRF44_BF) in Chile | AIDS Res Hum Retroviruses. 2010 Jul;26(7):821-6. | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Delobel (2004) | EVIDENCE for compartmentalization of human immunodeficiency virus type 1 in different blood cell types during prolonged suppressive antiretroviral therapy | Unpublished | 1e-129 | |
212 212RT |
0 | Evolution/quasispecies study |
| Demarest (2009) | Virologic failure in first-line human immunodeficiency virus therapy with a CCR5 entry inhibitor, aplaviroc, plus a fixed-dose combination of lamivudine-zidovudine: nucleoside reverse transcriptase inhibitor resistance regardless of envelope tropism | Antimicrob. Agents Chemother. 53 (3), 1116-1123 (2 | 1e-171 | |
16 10PR 15RT |
0 | Pending |
| Demeter (2000) | DELAVIRDINE susceptibilities and associated reverse transcriptase mutations in human immunodeficiency virus type 1 isolates from patients in a phase I/II trial of delavirdine monotherapy (ACTG 260) | Antimicrob. Agents Chemother. 44 (3), 794-797 (2000) | 4e-96 | 67 67RT |
67 67RT |
100 | HIVDB |
| Demeter (2001) | IMPACT of Clinical Reverse Transcriptase Sequences on the Replication Capacity of HIV-1 Drug-Resistant Mutants | Unpublished | 4e-96 | 15 15RT |
15 15RT |
100 | HIVDB |
| Deng (2010) | Molecular tracing of HIV type 1 transmission in Hainan province of China | AIDS. 2009 May 15;23(8):977-85 | 0 | |
1 1RT |
0 | Unpublished |
| Derache (2006) | GENETIC Diversity and Drug Resistance Mutations in Human Immunodeficiency Virus Type 1 from Untreated Patients in Bamako, Mali | Antivir. Ther. (Lond.) (2007) In press | 1e-140 | 94 93PR 94RT |
94 18PR 93RT |
100 | HIVDB |
| Derache (2008) | EVOLUTION of genetic diversity and drug resistance mutations in HIV-1 among untreated patients from Mali between 2005 and 2006 | J. Antimicrob. Chemother. 62 (3), 456-463 (2008) | 1e-145 | 110 110PR 110RT |
110 7PR 105RT |
100 | HIVDB |
| Deroo (2002) | HIV-1 subtypes in Luxembourg, 1983-2000 | AIDS 16 (18), 2461-2467 (2002) | 1e-133 | |
568 284PR 284RT |
0 | ARV Rx and/or other data are N/A |
| Desai (2008) | DIRECT Submission | Submitted (05-AUG-2008) Department of Neurovirology, Nationa | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Desai (2009) | HIV-2 isolate NNVB-HIV-2 from India, partial genome | Unpublished | 1e-24 | |
1 1IN |
0 | Pending |
| Desai (2000) | MOLECULAR cloning and primary nucleotide sequence analysis of a distinct human immunodeficiency virus isolate reveal significant divergence in its genomic sequences | Proc. Natl. Acad. Sci. U.S.A. 83 (21), 8380-8384 (1986) | 6e-74 | |
1 1PR |
0 | Gene fragment(s) |
| Descamps (1997) | SUSCEPTIBILITY of human immunodeficiency virus type 1 group O isolates to antiretroviral agents: in vitro phenotypic and genotypic analyses | J. Virol. 71 (11), 8893-8898 (1997) | 3e-19 | 10 10PR 10RT |
10 10PR 10RT |
100 | HIVDB |
| Descamps (2011) | Direct Submission | Submitted (16-DEC-2010) Laboratoire de Virologie, | 0 | |
136 136RT |
0 | Unpublished |
| Deshpande (2004) | MOLECULAR characterization of HIV type 1 isolates from untreated patients of Mumbai (Bombay), India, and detection of rare resistance mutations | AIDS Res. Hum. Retroviruses 20 (9), 1032-1035 (2004) | 1e-146 | 248 122PR 126RT |
248 122PR 126RT |
100 | HIVDB |
| Deshpande (2009) | Phylogenetic analysis of HIV-1 reverse transcriptase sequences from 382 patients recruited in JJ Hospital of Mumbai, India, between 2002 and 2008 | AIDS Res. Hum. Retroviruses 25 (6), 633-635 (2009) | 1e-150 | 86 86RT |
86 86RT |
100 | HIVDB |
| Desire (2001) | QUANTIFICATION of human immunodeficiency virus type 1 proviral load by a TaqMan real-time PCR assay | J. Clin. Microbiol. 39 (4), 1303-1310 (2001) | 3e-15 | |
16 16IN |
0 | Gene fragment(s) |
| Devereux (1999) | RAPID decline in detectability of HIV-1 drug resistance mutations after stopping therapy | AIDS 13 (18), 123-127 (1999) | 1e-128 | |
48 47PR 43RT |
0 | Evolution/quasispecies study |
| Devereux (1999) | SUBSTANTIAL correlation between HIV-1 drug-associated resistance mutations detected in plasma and peripheral blood mononuclear cells in heavily treated patients | Unpublished | 1e-127 | |
76 38PR 38RT |
0 | Pending |
| Devereux (2000) | REDUCTION in human immunodeficiency virus type 1 mutations associated with drug resistance after initiating new therapeutic regimens in pretreated patients | J. Infect. Dis. 181 (5), 1804-1807 (2000) | 1e-127 | |
80 40PR 40RT |
0 | Evolution/quasispecies study |
| Devereux (2000) | IN vivo HIV-1 compartmentalisation: drug resistance-associated mutation distribution | J. Med. Virol. 66 (1), 8-12 (2002) | 1e-122 | |
213 122PR 91RT |
0 | Evolution/quasispecies study |
| Devereux (2001) | REPLICATIVE fitness in vivo of HIV-1 variants with multiple drug resistance-associated mutations | J. Med. Virol. 65 (2), 218-224 (2001) | 1e-124 | |
27 27PR 27RT |
0 | Evolution/quasispecies study |
| Dewhurst (1993) | SEQUENCE analysis and acute pathogenicity of molecularly cloned SIVSMM-PBj14 | Nature 345 (6276), 636-640 (1990) | 1e-101 | 1 1PR 1RT 1IN |
5 2RT 5IN |
20 | Laboratory/experimental isolate |
| Diallo (2003) | THE M184V Substitution in Human Immunodeficiency Virus Type 1 Reverse Transcriptase Delays the Development of Resistance to Amprenavir and Efavirenz in Subtype B and C Clinical Isolates | Antimicrob. Agents Chemother. 47 (7), 2376-2379 (2003) | 1e-135 | |
6 3PR 3RT |
0 | Laboratory/experimental isolate |
| Diamond (2001) | IDENTIFICATION of a simian immunodeficiency virus reverse transcriptase variant with enhanced replicational fidelity in the late stage of viral infection | J. Biol. Chem. 276 (26), 23624-23631 (2001) | 1.1 | |
1 1RT |
0 | Laboratory/experimental isolate |
| Diamond (2002) | MONITORING Fidelity Change of Simian Immunodeficiency Virus Reverse Transcriptase (RT) During the Course of Viral Infection: A New RT Mutation Responsible for In Vivo RT Fidelity Change | Unpublished | 0.017 | |
2 2RT |
0 | Laboratory/experimental isolate |
| Diaz (2008) | SELECTIVE regimes and evolutionary rates of HIV-1 subtype B V3 variants in the Brazilian epidemic | Virology 381 (2), 184-193 (2008) | 0 | |
6 4PR 6RT 6IN |
0 | Case report(s) / study subset |
| Dietrich (1997) | A highly divergent HIV-2-related isolate | Nature 342 (6252), 948-950 (1989) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Dieudonne (2005) | HIGH prevalence of secondary resistance mutations in Venezuelan HIV-1 isolates | Invest. Clin. 47 (1), 27-34 (2006) | 1e-145 | |
30 22PR 30RT |
0 | Pending |
| Dilernia (2007) | HIV Type 1 Genetic Diversity Surveillance among Newly Diagnosed Individuals from 2003 to 2005 in Buenos Aires, Argentina | AIDS Res. Hum. Retroviruses 23 (10), 1201-1207 (2007) | 0 | 283 283PR 283RT |
283 222PR 282RT |
100 | HIVDB |
| Diop-Ndiaye (2010) | Antiretroviral Drug Resistance Mutations in antiretroviral-naive patients from 1998 to 2007 in Senegal | AIDS Res Hum Retroviruses. 2010 Sep 19. [Epub ahead of print | 0 | 122 122PR 122RT |
122 5PR 122RT |
100 | HIVDB |
| Doualla-Bell (2007) | HIGH prevalence of the K65R mutation in human immunodeficiency virus type 1 subtype C isolates from infected patients in Botswana treated with didanosine-based regimens | Antimicrob. Agents Chemother. 50 (12), 4182-4185 (2006) | 1e-176 | 23 23RT |
23 23RT |
100 | HIVDB |
| Dourado (2005) | HIV in the general population of an urban center in northeast Brazil | Unpublished | 2e-51 | |
4 4PR |
0 | Case report(s) / study subset |
| Dowling (2002) | FORTY-ONE near full-length HIV-1 sequences from Kenya reveal an epidemic of subtype A and A-containing recombinants | AIDS 16 (13), 1809-1820 (2002) | 1e-166 | 41 41PR 41RT 41IN |
41 41PR 41RT 41IN |
100 | HIVDB |
| Drexler (2006) | RATES of and Reasons for Failure of Commercial Human Immunodeficiency Virus Type 1 Viral Load Assays in Brazil | J. Clin. Microbiol. 45 (6), 2061-2063 (2007) | 1e-143 | |
16 6PR 16RT |
0 | Case report(s) / study subset |
| Duan (2001) | INHIBITION of purified recombinant reverse transcriptase from wild-type and zidovudine-resistant clinical isolates of human immunodeficiency virus type 1 by zidovudine, stavudine, and lamivudine triphosphates | J. Infect. Dis. 184 (10), 1336-1340 (2001) | 5e-89 | |
2 2RT |
0 | Laboratory/experimental isolate |
| Dumans (2002) | PREVALENCE of protease and reverse transcriptase drug resistance mutations over time in drug-naive human immunodeficiency virus type 1-positive individuals in Rio de Janeiro, Brazil | Antimicrob. Agents Chemother. 46 (9), 3075-3079 (2002) | 1e-129 | 101 54PR 47RT |
102 55PR 47RT |
99 | HIVDB |
| Dumans (2004) | SYNONYMOUS Genetic Polymorphisms within Brazilian Human Immunodeficiency Virus Type 1 Subtypes May Influence Mutational Routes to Drug Resistance | J. Infect. Dis. 189 (7), 1232-1238 (2004) | 0 | 186 83PR 130RT |
188 84PR 131RT 1IN |
98 | HIVDB |
| Dumans (2008) | DISTINCT resistance mutation and polymorphism acquisition in HIV-1 protease of subtypes B and F1 from children and adult patients under virological failure | Infect. Genet. Evol. 9 (1), 62-70 (2009) | 0 | 118 118PR 88RT |
118 67PR 65RT |
100 | HIVDB |
| Dunne (2001) | COMPARISON of genotyping and phenotyping methods for determining susceptibility of HIV-1 to antiretroviral drugs | AIDS 15 (12), 1471-1475 (2001) | 1e-124 | 17 17PR 17RT |
17 17PR 17RT |
100 | HIVDB |
| Duque (2002) | THERAPEUTICS failure: Portuguese Cohort | Unpublished | 1e-128 | 104 104RT |
316 212PR 104RT |
32 | HIVDB |
| Duque (2002) | HUMAN immunodeficiency virus type 1 M36TV insertion in protease sequence | Unpublished | 1e-78 | |
2 2PR |
0 | Pending |
| Dvali (2010) | Characterization of HIV-1 Subtypes and Drug Resistance Mutations among Infected Individuals in Georgia | Unpublished | 1e-49 | |
7 7PR |
0 | Unpublished |
| Dykes (2004) | DETECTION of Minority Drug-Resistant Variants of HIV-1 During Virologic Failure of Zidovudine (ZDV), Lamivudine (3TC), and Indinavir (IDV) | Unpublished | 0 | |
270 270PR 212RT |
0 | Evolution/quasispecies study |
| Dzissyuk (2011) | Direct Submission | Submitted (16-DEC-2010) Science, Republican Center | 8e-50 | |
2 2PR |
0 | Unpublished |
| Eberle (2008) | SEQUENCE of a HIV-1 Subtype F that is underquantified by Roche COBAS TaqMan and COBAS Amplicor Virus Load Tests | Unpublished | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Edmonson (1998) | EVOLUTION of a simian immunodeficiency virus pathogen | J. Virol. 72 (1), 405-414 (1998) | 4e-22 | |
1 1IN |
0 | Laboratory/experimental isolate |
| El Annaz (2010) | Presence of drug resistance mutations among drug-naive patients in Morocco | AIDS Res. Hum. Retroviruses (2010) In press | 1e-148 | 59 48PR 11RT |
59 48PR 11RT |
100 | HIVDB |
| El-Khatib (2011) | Viremia and drug resistance among HIV-1 patients on antiretroviral treatment: a cross-sectional study in Soweto, South Africa | AIDS 24 (11), 1679-1687 (2010) | 1e-167 | 54 47PR 54RT |
54 10PR 54RT |
100 | HIVDB |
| Ellenberger (1997) | GENETIC diversity of HIV-1 in Abidjan, Cote d'Ivoire | Unpublished | 7e-86 | 20 20PR |
23 23PR |
86 | HIVDB |
| Ellis (2009) | Increased detection of HIV-1 drug-resistance at primary diagnosis in peripheral blood cells compared to plasma | Unpublished | 0 | |
58 55PR 6RT |
0 | Unpublished |
| English (2011) | Transmission of highly distinct HIV-1 variants from a single donor | Unpublished | 1e-152 | |
66 66RT |
0 | Unpublished |
| Eremin (2010) | CRF02_A/G isolated from patient on HAART with NRTIs and NNRTIs high level resistance | Unpublished | 1e-178 | |
1 1RT |
0 | Unpublished |
| Eremin (2010) | Genotyping HIV-1 isolated from HIV-infected children born to HIV-infected mothers | Unpublished | 0 | |
1 1RT |
0 | Unpublished |
| Eron (1998) | RESISTANCE of HIV-1 to antiretroviral agents in blood and seminal plasma: implications for transmission | AIDS 12 (15), F181-F189 (1998) | 1e-130 | |
59 59PR 59RT |
0 | Pending |
| Escoto-Delgadillo (2007) | DRUG-RESISTANCE mutations in antiretroviral-naive patients with established HIV-1 infection in Mexico | HIV Med. 6 (6), 403-409 (2005) | 7e-51 | |
30 30PR |
0 | Case report(s) / study subset |
| Eshleman (2001) | IMPACT of human immunodeficiency virus type 1 (hiv-1) subtype on women receiving single-dose nevirapine prophylaxis to prevent hiv-1 vertical transmission (hiv network for prevention trials 012 study) | J. Infect. Dis. 184 (7), 914-917 (2001) | 1e-110 | 102 102PR 102RT |
102 102PR 102RT |
100 | HIVDB |
| Eshleman (2001) | ANALYSIS of human immunodeficiency virus type 1 drug resistance in children receiving nucleoside analogue reverse-transcriptase inhibitors plus nevirapine, nelfinavir, or ritonavir (Pediatric AIDS Clinical Trials Group 377) | J. Infect. Dis. 183 (12), 1732-1738 (2001) | 1e-129 | 229 229PR 229RT |
229 229PR 229RT |
100 | HIVDB |
| Eshleman (2002) | SURVIVAL of Ugandan infants with subtype A and D HIV-1 infection (HIVNET 012) | J. Acquir. Immune Defic. Syndr. 31 (3), 327-330 (2002) | 1e-112 | 54 54PR 54RT |
54 54PR 54RT |
100 | HIVDB |
| Eshleman (2003) | USE of uracil N-glycosylase (UNG) negative Escherichia coli to clone dUTP-containing HIV-1 DNA generated using a commercial HIV-1 genotyping system | Unpublished | 0 | |
20 20PR 20RT |
0 | ARV Rx and/or other data are N/A |
| Eshleman (2004) | CHARACTERIZATION of nevirapine resistance mutations in women with subtype A vs. D HIV-1 6-8 weeks after single-dose nevirapine (HIVNET 012) | J. Acquir. Immune Defic. Syndr. 35 (2), 126-130 (2004) | 0 | 178 178PR 178RT |
178 178PR 178RT |
100 | HIVDB |
| Eshleman (2004) | PERFORMANCE of the Celera Diagnostics ViroSeq HIV-1 Genotyping System for Sequence-Based Analysis of Diverse Human Immunodeficiency Virus Type 1 Strains | J. Clin. Microbiol. 42 (6), 2711-2717 (2004) | 0 | 124 124PR 124RT |
124 124PR 124RT |
100 | HIVDB |
| Eshleman (2004) | COMPARISON of nevirapine (NVP) resistance in Ugandan women 7 days vs. 6-8 weeks after single-dose NVP prophylaxis: HIVNET 012 | AIDS Res. Hum. Retroviruses 20 (6), 595-599 (2004) | 0 | 76 76PR 76RT |
78 78PR 78RT |
97 | HIVDB |
| Eshleman (2005) | LIMITED Evolution in the HIV Type 1 pol Region among Acute Seroconverters in Pune, India | AIDS Res. Hum. Retroviruses 21 (1), 93-97 (2005) | 0 | 29 29PR 29RT |
33 33PR 33RT |
87 | HIVDB |
| Eshleman (2005) | NEVIRAPINE (NVP) Resistance in Women with HIV-1 Subtype C, Compared with Subtypes A and D, after the Administration of Single-Dose NVP | J. Infect. Dis. 192 (1), 30-36 (2005) | 0 | 65 65PR 65RT |
67 58PR 67RT |
97 | HIVDB |
| Eshleman (2005) | DISTINCT patterns of emergence and fading of K103N and Y181C in women with subtype A vs. D after single-dose nevirapine: HIVNET 012 | J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005) | 0 | |
81 80PR 81RT |
0 | Evolution/quasispecies study |
| Eshleman (2006) | PHENOTYPIC drug resistance patterns in subtype A HIV-1 clones with non-nucleoside reverse transcriptase (NNRTI) resistance mutations | AIDS Res. Hum. Retroviruses (2005) In press | 0 | 35 35PR 35RT |
35 31PR 35RT |
100 | HIVDB |
| Eshleman (2006) | NEVIRIPINE Resistance in Malawian Infants | AIDS. 2005 Dec 2;19(18):2167-9. | 0 | |
78 54PR 78RT |
0 | Pending |
| Eshleman (2007) | ANTIRETROVIRAL drug resistance, HIV-1 tropism, and HIV-1 subtype among men who have sex with men with recent HIV-1 infection | AIDS 21 (9), 1165-1174 (2007) | 0 | 195 195PR 195RT |
195 186PR 195RT |
100 | HIVDB |
| Eshleman (2008) | HIV-1 variants with nevirapine resistance mutations are rarely detected in antiretroviral drug naive African women with subtypes A, C, and D | AIDS Res. Hum. Retroviruses (2007) In press | 0 | 198 198PR 198RT |
198 82PR 198RT |
100 | HIVDB |
| Eshleman (2009) | Analysis of pol integrase sequences in diverse HIV type 1 strains using a prototype genotyping assay | AIDS Res. Hum. Retroviruses 25 (3), 343-345 (2009) | 1e-167 | 110 110IN |
120 120IN |
91 | HIVDB |
| Eshleman (2009) | Antiretroviral drug susceptibility among drug-naive adults with recent HIV infection in Rakai, Uganda | AIDS 27 (7), 845-852 (2009) | 1e-169 | 104 104PR 104RT |
104 82PR 54RT |
100 | HIVDB |
| Espinosa (2002) | INTERSUBTYPE BF recombinants of HIV-1 in a population of injecting drug users in Argentina | J. Acquir. Immune Defic. Syndr. 36 (1), 630-636 (2004) | 1e-102 | 21 21PR 21RT |
21 21PR 21RT |
100 | HIVDB |
| Esteves (2004) | NATURAL variation of HIV-1 subtype G protease | Unpublished | 5e-52 | 51 51PR |
55 55PR 53RT |
92 | HIVDB |
| Esteves (2007) | FULL-LENGTH HIV-1 subtype G molecular clone | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Etiebet (2011) | Tenofovir Disoproxil Fumarate based regimens associated with less nucleoside reverse transcriptase inhibitors drug resistance mutations in Nigerian patients failing first-line anti-retroviral therapy | Unpublished | 1e-52 | |
15 15PR |
0 | Unpublished |
| Eyer-Silva (2002) | REMISSION of HIV-associated myelopathy after initiation of lopinavir in a patient with extensive previous exposure to highly active antiretroviral therapy | AIDS 16 (17), 2367-2369 (2002) | 4e-47 | |
1 1PR |
0 | Case report(s) / study subset |
| Eyer-Silva (2006) | MOLECULAR epidemiology of HIV-1 infection in a small Brazilian county: usefulness of envelope and polymerase sequences to epidemiologic studies | J. Acquir. Immune Defic. Syndr. 41 (5), 664-670 (2006) | 1e-136 | |
54 15PR 54RT |
0 | Pending |
| Eyer-Silva (2007) | MOLECULAR Epidemiology of HIV Type 1 in Inner Rio De Janeiro State, Brazil | AIDS Res. Hum. Retroviruses 23 (2), 303-308 (2007) | 0 | 24 24PR 24RT |
79 31PR 78RT |
30 | HIVDB |
| Eyer-Silva (2008) | AUTOCHTHONOUS horizontal transmission of a CRF02_AG strain revealed by a human immunodeficiency virus type 1 diversity survey in a small city in inner state of Rio de Janeiro, Southeast Brazil | Mem. Inst. Oswaldo Cruz 102 (7), 809-815 (2007) | 0 | 9 9PR 9RT |
9 8PR 1RT |
100 | HIVDB |
| Eyre (2006) | MULTIPLE drug resistance mutations in human immunodeficiency virus in semen but not blood of a man on antiretroviral therapy | Urology 55 (4), 591 (2000) | 2e-52 | |
33 33PR |
0 | Evolution/quasispecies study |
| Eyzaguirre (2006) | FIRST Molecular Surveillance Report of HIV Type 1 in Injecting Drug Users And Female Sex Workers along The U.S.-Mexico Border | AIDS Res. Hum. Retroviruses 23 (2), 331-334 (2007) | 1e-149 | |
11 10PR 11RT |
0 | Case report(s) / study subset |
| Eyzaguirre (2007) | GENETIC Characterization of HIV-1 Strains Circulating in Kazakhstan | J. Acquir. Immune Defic. Syndr. (2007) In press | 0 | 75 75PR 75RT 6IN |
75 73PR 6RT 6IN |
100 | HIVDB |
| Eyzaguirre (2011) | Low HIV-1 viral load associated with increased prevalence of defective proviruses in Natural Viral Suppressors | Unpublished | 0 | |
46 36PR 46RT 46IN |
0 | Unpublished |
| Eyzaguirre (2011) | Molecular Epidemiology of Human Immunodeficiency Virus-Infected Individuals in Paraguay | Unpublished | 0 | |
25 14PR 25RT 25IN |
0 | Unpublished |
| Eyzaguirre (2011) | Characterization of Acute HIV-1 Infection in High-Risk Nigerian Populations and the comparison with Acute HIV-1 Subtype B Infection | Unpublished | 0 | |
14 2PR 14RT 14IN |
0 | Unpublished |
| Falloon (2000) | COMBINATION therapy with amprenavir, abacavir, and efavirenz in human immunodeficiency virus (HIV)-infected patients failing a protease-inhibitor regimen: pharmacokinetic drug interactions and antiviral activity | Clin. Infect. Dis. 30 (2), 313-318 (2000) | 1e-118 | 40 20PR 20RT |
40 20PR 20RT |
100 | HIVDB |
| Fang (2000) | GENETIC Variability of the HIV-1 Sequences from Plasma and Cervical Compartments | Unpublished | 1e-164 | |
42 42PR 42RT 18IN |
0 | Evolution/quasispecies study |
| Fang (2001) | ANALYSIS of transition from long-term nonprogressive to progressive infection identifies sequences that may attenuate HIV type 1 | AIDS Res. Hum. Retroviruses 17 (15), 1395-1404 (2001) | 1e-163 | |
10 10PR 10RT 10IN |
0 | Case report(s) / study subset |
| Fang (2004) | LONG-TERM Survivors in Nairobi: Complete HIV-1 RNA Sequences and Immunogenetic Associations | J. Infect. Dis. 190 (4), 697-701 (2004) | 0 | 7 7PR 7RT 7IN |
7 7PR 7RT 7IN |
100 | HIVDB |
| Fang (2002) | PCR-MEDIATED recombination: a general method applied to construct chimeric infectious molecular clones of plasma-derived HIV-1 RNA | Nat. Med. 5 (2), 239-242 (1999) | 1e-163 | |
2 2PR 2RT 2IN |
0 | Laboratory/experimental isolate |
| Fang (2003) | RECOMBINATION following superinfection by HIV-1 | AIDS 18 (2), 153-159 (2004) | 0 | |
3 3PR 3RT 3IN |
0 | Case report(s) / study subset |
| Fang (1995) | UNIQUE insertion sequence and pattern of CD4 expression in variants selected with immunotoxins from human immunodeficiency virus type 1-infected T cells | J. Virol. 69 (1), 75-81 (1995) | 1e-164 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Farrar (1991) | CHARACTERISATION of a series of human immunodeficiency virus isolates derived sequentially from a single patient | J. Med. Virol. 34 (2), 104-113 (1991) | 1e-163 | |
1 1PR 1RT 1IN |
0 | Evolution/quasispecies study |
| Federico (1989) | BIOLOGIC and molecular characterization of producer and nonproducer clones from HUT-78 cells infected with a patient HIV isolate | AIDS Res. Hum. Retroviruses 5 (4), 385-396 (1989) | 1e-165 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Fernandez (2006) | FITNESS Landscape of Human Immunodeficiency Virus Type 1 Protease Quasispecies | J. Virol. 81 (5), 2485-2496 (2007) | 1e-52 | |
295 295PR |
0 | Evolution/quasispecies study |
| Fernandez-Garcia (2008) | DEVELOPMENT of a Panel of Well-Characterized Human Immunodeficiency Virus Type 1 Isolates from Newly Diagnosed Patients Including Acute and Recent Infections | AIDS Res. Hum. Retroviruses 25 (1), 93-102 (2009) | 0 | |
14 3PR 14RT 14IN |
0 | Case report(s) / study subset |
| Fernandez-Garcia (2009) | Near full-length genome characterization of a newly identified HIV type 1 subtype F variant circulating in St. Petersburg, Russia | AIDS Res. Hum. Retroviruses 25 (11), 1187-1191 (20 | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Fernandez-Garcia (2010) | Identification of a new HIV-1 circulating BF intersubtype recombinant form (CRF47_BF) in Spain | AIDS Res. Hum. Retroviruses (2010) In press | 0 | 4 4PR 4RT 2IN |
7 4PR 7RT 2IN |
57 | HIVDB |
| Ferrari (2004) | HLA-A and -B allele expression and ability to develop anti-Gag cross-clade responses in subtype C HIV-1 infected Ethiopians | Hum. Immunol. 65 (6), 648-659 (2004) | 8e-08 | |
11 11PR |
0 | Gene fragment(s) |
| Ferreira (2010) | Prevalence of primary drug resistance-associated mutations among HIV type 1 vertically Infected children in Belo Horizonte, Brazil | AIDS Res. Hum. Retroviruses 26 (2), 229-232 (2010) | 0 | 40 40PR 40RT |
40 12PR 40RT |
100 | HIVDB |
| Finzi (1997) | IDENTIFICATION of a reservoir for HIV-1 in patients on highly active antiretroviral therapy | Science 278 (5341), 1295-1300 (1997) | 1e-124 | |
12 12PR 12RT |
0 | Evolution/quasispecies study |
| Fischetti (2003) | MOLECULAR epidemiology of HIV in Ghana: dominance of CRF02_AG | J. Med. Virol. 73 (2), 158-166 (2004) | 4e-85 | |
235 235RT |
0 | Gene fragment(s) |
| Fish (2010) | Natural polymorphisms of integrase among HIV type 1-infected South African patients | AIDS Res. Hum. Retroviruses 26 (4), 489-493 (2010) | 1e-163 | 73 73IN |
73 73IN |
100 | HIVDB |
| Fitzgibbon (1991) | IN vivo prevalence of azidothymidine (AZT) resistance mutations in an AIDS patient before and after AZT therapy | AIDS Res. Hum. Retroviruses 7 (3), 265-269 (1991) | 3e-56 | |
18 18RT |
0 | Case report(s) / study subset |
| Fitzgibbon (1993) | HUMAN immunodeficiency virus type 1 pol gene mutations in an AIDS patient treated with multiple antiretroviral drugs | J. Virol. 67 (12), 7271-7275 (1993) | 9e-94 | 23 23RT |
23 23RT |
100 | HIVDB |
| Fitzgibbon (1993) | A new type of G-->A hypermutation affecting human immunodeficiency virus | AIDS Res. Hum. Retroviruses 9 (9), 833-838 (1993) | 6e-67 | 2 2RT |
2 2RT |
100 | HIVDB |
| Fitzgibbon (1993) | HUMAN immunodeficiency virus type 1 pol gene mutations which cause decreased susceptibility to 2',3'-dideoxycytidine | Antimicrob. Agents Chemother. 36 (1), 153-157 (1992) | 8e-54 | 17 17RT |
17 17RT |
100 | HIVDB |
| Fitzgibbon (2001) | EMERGENCE of drug resistance mutations in a group of HIV-infected children taking nelfinavir-containing regimens | AIDS Res. Hum. Retroviruses 17 (14), 1321-1328 (2001) | 1e-126 | 51 28PR 23RT |
51 28PR 23RT |
100 | HIVDB |
| Flaherty (1997) | MOLECULAR and biological characterization of a neurovirulent molecular clone of simian immunodeficiency virus | J. Virol. 71 (8), 5790-5798 (1997) | 5e-99 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Fleury (2011) | Drug resistance mutations in HIV-1 isolates from naive patients eligible for first line ART in JJ Hospital, Mumbai, India | AIDS Res. Hum. Retroviruses (2011) In press | 5e-50 | 5 5PR |
5 5PR |
100 | HIVDB |
| Flores (1999) | HIV-1 subtype F in single and dual infections in Puerto Rico: A potential sentinel site for monitoring novel genetic HIV variants in North America | Emerging Infect. Dis. 5 (3), 481-483 (1999) | 1e-130 | 19 19PR |
19 19PR |
100 | HIVDB |
| Fomsgaard (1991) | A highly divergent proviral DNA clone of SIV from a distinct species of African green monkey | Virology 182 (1), 397-402 (1991) | 1e-113 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Fomsgaard (2008) | FULL-LENGTH Characterization of A1/D Intersubtype Recombinant Genomes from a Therapy-Induced HIV Type 1 Controller during Acute Infection and His Noncontrolling Partner | AIDS Res. Hum. Retroviruses 24 (3), 463-472 (2008) | 0 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Fonjungo (2000) | HUMAN immunodeficiency virus type 1 group m protease in cameroon: genetic diversity and protease inhibitor mutational features | J. Clin. Microbiol. 40 (3), 837-845 (2002) | 1e-121 | 110 110PR |
111 111PR |
99 | HIVDB |
| Frahm (2006) | INCREASED Sequence Diversity Coverage Improves Detection of HIV-Specific T Cell Responses | J. Immunol. 179 (10), 6638-6650 (2007) | 0 | |
8 6PR 8RT 8IN |
0 | Case report(s) / study subset |
| Franchini (1996) | MOLECULAR and biological characterization of a replication competent human immunodeficiency type 2 (HIV-2) proviral clone | Proc. Natl. Acad. Sci. U.S.A. 86 (7), 2433-2437 (1989) | 0.017 | 1 1PR 1RT 1IN |
1 1RT |
100 | HIVDB |
| Franchini (2004) | SEQUENCE of simian immunodeficiency virus and its relationship to the human immunodeficiency viruses | Nature 328 (6130), 539-543 (1987) | 0 | |
1 1RT 1IN |
0 | HIVDB |
| Frange (2008) | NEW and Old Complex Recombinant HIV-1 Strains Among Patients with Primary Infection in 1996-2006 in France: the French ANRS CO06 Primo Cohort Study | Unpublished | 0 | |
2 2RT 2IN |
0 | Case report(s) / study subset |
| Frenkel (2002) | MULTIPLE Viral Genetic Analyses Detect Low-Level Human Immunodeficiency Virus Type 1 Replication during Effective Highly Active Antiretroviral Therapy | J. Virol. 77 (10), 5721-5730 (2003) | 1e-135 | |
979 777PR 801RT |
0 | Evolution/quasispecies study |
| Frenkel (2003) | DRUG-RESISTANT mutants of human immunodeficiency virus type 1 persist at higher concentrations in peripheral blood mononuclear cells compared to plasma and are detected at a higher rate by OLA compared to consensus sequencing | Unpublished | 1e-136 | |
107 57PR 99RT |
0 | ARV Rx and/or other data are N/A |
| Fujisaki (2009) | An 11-Year Surveillance of HIV Type 1 Subtypes in Nagoya, Japan | AIDS Res. Hum. Retroviruses 25 (1), 15-21 (2009) | 2e-52 | 107 107PR 107RT |
107 107PR |
100 | HIVDB |
| Fukasawa (1999) | SEQUENCE of simian immunodeficiency virus from African green monkey, a new member of the HIV/SIV group | Nature 333 (6172), 457-461 (1988) | 1e-109 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Fumin (2002) | CLONING and Characterization of a Virtually Full-Length HIV-1 Genome of a Prevalent Subtype B-Thai Strain in Central China | Unpublished | 1e-162 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Gafarova (2008) | Direct Submission | Submitted (19-NOV-2008) Biotechnology, The D.I. Iv | 1e-166 | |
44 1PR 43IN |
0 | Unpublished |
| Gafarova (2009) | The sequence of fragment of HIV-1 subtype G pol gene from Russia patient 0110 | Unpublished | 1e-177 | |
2 1RT 1IN |
0 | Case report(s) / study subset |
| Gafarova (2009) | Full sequence of HIV-1 subtype G protease gene, isolated from Russia patient 104 | Unpublished | 5e-49 | |
1 1PR |
0 | Unpublished |
| Galkin (2004) | FULL-LENGTH Genomic Sequencing and Analysis of Four HIV Type 1 Subtype B Isolates Circulating in the Territory of Russia | AIDS Res. Hum. Retroviruses 22 (11), 1192-1197 (2006) | 0 | 4 4PR 4RT 4IN |
4 3PR 4RT 4IN |
100 | HIVDB |
| Galkin (2006) | SEQUENCING and analysis of full-length HIV-1 CRF06_cpx isolate from Russia | Unpublished | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Galkin (2009) | The study of long-term HAART treatment effect for resistance-connected alterations in HIV-1 subtype B genes of 4 Austrian IDU patients | Unpublished | 0 | |
3 2PR 3RT 3IN |
0 | Case report(s) / study subset |
| Gallant (2005) | EARLY Virologic Non-Response to Tenofovir, Abacavir, and Lamivudine in HIV-Infected Antiretroviral Naive Subjects | J. Infect. Dis. (2005) In press | 1e-173 | 41 41PR 41RT |
41 41PR 41RT |
100 | HIVDB |
| Galli (2007) | RECOMBINATION analysis and structure prediction show correlation between breakpoint clusters and RNA hairpins in the pol gene of human immunodeficiency virus type 1 unique recombinant forms | J. Gen. Virol. 89 (PT 12), 3119-3125 (2008) | 1e-133 | |
28 27PR 4RT |
0 | Pending |
| Gandhi (2008) | ROLE of APOBEC3G/F-mediated hypermutation in the control of human immunodeficiency virus type 1 in elite suppressors | J. Virol. 82 (6), 3125-3130 (2008) | 0.027 | |
1 1IN |
0 | Gene fragment(s) |
| Gao (2001) | RECOMBINATION in human immunodefeciency virus type 2 | Unpublished | 1e-100 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | Laboratory/experimental isolate |
| Gao (2003) | COMPLETE genomes of HIV-1 subtype C viruses in South Africa | Unpublished | 0 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Gao (1999) | ORIGIN of HIV-1 in the chimpanzee Pan troglodytes troglodytes | Nature 397 (6718), 436-441 (1999) | 1e-155 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Gao (1996) | MOLECULAR cloning and analysis of functional envelope genes from human immunodeficiency virus type 1 sequence subtypes A through G. The WHO and NIAID Networks for HIV Isolation and Characterization | J. Virol. 70 (3), 1651-1667 (1996) | 1e-162 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Gao (1996) | THE heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin | J. Virology 70 (10), 7013-7029 (1996) | 1e-164 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Gao (1998) | AN isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I) | J. Virol. 72 (12), 10234-10241 (1998) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Gao (1998) | A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1 | J. Virol. 72 (7), 5680-5698 (1998) | 1e-166 | 8 8PR 8RT 8IN |
8 8PR 8RT 8IN |
100 | HIVDB |
| Gao (2001) | MOLECULAR characterization of a highly divergent HIV type 1 isolate obtained early in the AIDS epidemic from the Democratic Republic of Congo | AIDS Res. Hum. Retroviruses 17 (12), 1217-1222 (2001) | 1e-166 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Gao (2001) | EVIDENCE of two distinct subsubtypes within the HIV-1 subtype A radiation | AIDS Res. Hum. Retroviruses 17 (8), 675-688 (2001) | 1e-164 | 6 5PR 5RT 6IN |
10 9PR 6RT 6IN |
60 | HIVDB |
| Gao (1992) | HUMAN infection by genetically diverse SIVSM-related HIV-2 in west Africa | Nature 358 (6386), 495-499 (1992) | 5e-66 | 3 3RT |
16 16RT 16IN |
18 | HIVDB |
| Gao (1993) | GENETIC typing of HIV-2 from a Senegalese/German heterosexual transmission | AIDS Res. Hum. Retroviruses 9 (7), 703-704 (1993) | 2e-64 | |
2 2RT 2IN |
0 | Case report(s) / study subset |
| Gao (1994) | GENETIC diversity of human immunodeficiency virus type 2: evidence for distinct sequence subtypes with differences in virus biology | J. Virol. 68 (11), 7433-7447 (1994) | 1e-111 | 2 2RT |
6 6RT 4IN |
33 | HIVDB |
| Garaev (2006) | 5' region of HIV-1 G subtype pol gene | Unpublished | 1e-163 | |
79 3PR 79RT |
0 | Pending |
| Garaev (2007) | DIRECT Submission | Submitted (08-NOV-2006) Biotechnology, The D.I. Ivanovsky In | 1e-161 | |
13 2PR 12RT |
0 | Pending |
| Garcia-Arriaza (2007) | CHARACTERIZATION of minority subpopulations in the mutant spectrum of HIV-1 quasispecies by successive specific amplifications | Virus Res. 129 (2), 123-134 (2007) | 2e-50 | |
3 3PR |
0 | Case report(s) / study subset |
| Garcia-Bujalance (2005) | COMPARISON between Sequence Analysis and a Line Probe Assay for Testing Genotypic Resistance of Human Immunodeficiency Virus Type 1 to Antiretroviral Drugs | J. Clin. Microbiol. 43 (8), 4186-4188 (2005) | 1e-123 | 94 40PR 54RT |
94 40PR 54RT |
100 | HIVDB |
| Garcia-Lerma (2001) | INCREASED ability for selection of zidovudine resistance in a distinct class of wild-type HIV-1 from drug-naive persons | Proc. Natl. Acad. Sci. U.S.A. 98 (24), 13907-13912 (2001) | 5e-89 | |
7 7RT |
0 | Case report(s) / study subset |
| Garcia-Lerma (2004) | TRANSMITTED Human Immunodeficiency Virus Type 1 Carrying the D67N or K219Q/E Mutation Evolves Rapidly to Zidovudine Resistance In Vitro and Shows a High Replicative Fitness in the Presence of Zidovudine | J. Virol. 78 (14), 7545-7552 (2004) | 1e-142 | |
6 6RT |
0 | Case report(s) / study subset |
| Garcia-Vallejo (2009) | Molecular epidemiology of Human immunodeficiency virus (HIV-1) antiviral resistance in isolates from patient of Colombian Caribbean Region | Unpublished | 0 | |
107 48PR 59RT |
0 | Unpublished |
| Garcia-Vallejo (2009) | First Report of Human Immunodeficiency Virus type 2 (HIV-2) Infection in the Colombian Caribbean Region | Unpublished | 0 | |
3 3RT |
0 | Unpublished |
| Garrido (2009) | Integrase variability and susceptibility to HIV integrase inhibitors: impact of subtypes, antiretroviral experience and duration of HIV infection | J. Antimicrob. Chemother. 65 (2), 320-326 (2010) | 1e-166 | 418 418IN |
418 418IN |
100 | HIVDB |
| Garrido (2010) | Dynamics in the selection of resistance mutations in HIV patients failing Raltegravir and following its discontinuation | Unpublished | 1e-166 | |
53 53IN |
0 | Unpublished |
| Garriga (2010) | HIV-1 reverse transcriptase thumb subdomain polymorphisms associated with virological failure to nucleoside drug combinations | J. Antimicrob. Chemother. 64 (2), 251-258 (2009) | 0 | |
153 76PR 147RT |
0 | Pending |
| Gashnikova (2011) | Biological and Genetic Characterization of HIV-1 Strains Circulating in Siberia, Russia | Unpublished | 1e-176 | |
30 10PR 29RT |
0 | Unpublished |
| Gatanaga (1999) | ACTIVE HIV-1 redistribution and replication in the brain with HIV encephalitis | Arch. Virol. 144 (1), 29-43 (1999) | 1e-52 | |
261 261RT |
0 | Evolution/quasispecies study |
| Gatanaga (1999) | ANTI-HIV effect of saquinavir combined with ritonavir is limited by previous long-term therapy with protease inhibitors | AIDS Res. Hum. Retroviruses 15 (17), 1493-1498 (1999) | 1e-126 | 15 15PR |
15 15PR |
100 | HIVDB |
| Gatanaga (2000) | DISCORDANCE between plasma- and PBMC-derived HIV-1 genotypes on protease inhibitor resistance | Unpublished | 1e-130 | |
70 70PR |
0 | ARV Rx and/or other data are N/A |
| Gatanaga (2011) | Drug-resistant HIV-1 prevalence in patients newly diagnosed with HIV/AIDS in Japan | Antiviral Res. 75 (1), 75-82 (2007) | 1e-165 | |
452 407PR 193RT |
0 | Pending |
| Geels (2003) | IDENTIFICATION of Sequential Viral Escape Mutants Associated with Altered T-Cell Responses in a Human Immunodeficiency Virus Type 1-Infected Individual | J. Virol. 77 (23), 12430-12440 (2003) | 0 | |
7 7PR 7RT 7IN |
0 | Case report(s) / study subset |
| Geels (2005) | DIFFERENTIAL loss of human immunodeficiency virus type I (HIV-1)-specific T-helper responses in two HIV-1 infected individuals following CTL escape | Unpublished | 0 | |
5 5PR 5RT 5IN |
0 | Case report(s) / study subset |
| Gendelman (1987) | MOLECULAR characterization of a polymerase mutant human immunodeficiency virus | Virology 191 (1), 529 (1992) | 1e-98 | |
3 3RT |
0 | Laboratory/experimental isolate |
| Geng (2010) | Indinavir resistance pathway in one human immunodeficiency virus type 1 infected patient revealed by single-genome amplification | Unpublished | 0 | |
169 10PR 169RT |
0 | Unpublished |
| Georges-Courbot (1998) | NATURAL infection of a household pet red-capped mangabey (Cercocebus torquatus torquatus) with a new simian immunodeficiency virus | J. Virol. 72 (1), 600-608 (1998) | 5e-71 | |
1 1IN |
0 | Pending |
| Ghosh (1998) | HUMAN Immunodeficiency Virus type 1 complete genomic sequence | Unpublished | 1e-164 | |
1 1PR 1RT 1IN |
0 | HIVDB |
| Ghosh (1993) | A molecular clone of HIV-1 tropic and cytopathic for human and chimpanzee lymphocytes | Virology 194 (2), 858-864 (1993) | 1e-164 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Giri (2000) | CASE report of a novel amino acid deletion in codon 67 and T69G substitution in the RT of HIV-1 | Unpublished | 2e-76 | |
2 2RT |
0 | Case report(s) / study subset |
| Gittens (2002) | THE Molecular Epidemiology and Drug Resistance Determination of HIV Type 1 Subtype B Infection in Barbados | AIDS Res. Hum. Retroviruses 19 (4), 313-319 (2003) | 1e-126 | 27 27PR |
71 27PR 44RT |
38 | HIVDB |
| Giuliani (2008) | NON-B HIV Type 1 Subtypes among Men Who Have Sex with Men in Rome, Italy | AIDS Res. Hum. Retroviruses 25 (2), 157-164 (2009) | 0 | |
116 64PR 116RT |
0 | Pending |
| Glenn (2006) | A single amino acid change in gp41 is linked to the macrophage-only replication phenotype of a molecular clone of simian immunodeficiency virus derived from the brain of a macaque with neuropathogenic infection | Virology 325 (2), 297-307 (2004) | 8e-19 | |
1 1IN |
0 | Laboratory/experimental isolate |
| Goldberg (2009) | Coinfection of Ugandan red colobus (Procolobus [Piliocolobus] rufomitratus tephrosceles) with novel, divergent delta-, lenti-, and spumaretroviruses | J. Virol. 83 (21), 11318-11329 (2009) | 2e-45 | |
3 3IN |
0 | Gene fragment(s) |
| Gomez-Carrillo (2004) | DRUG Resistance Testing Provides Evidence of the Globalization of HIV Type 1: A New Circulating Recombinant Form | AIDS Res. Hum. Retroviruses 20 (8), 885-888 (2004) | 0 | 589 589PR 589RT |
589 589PR 589RT |
100 | HIVDB |
| Gomez-Carrillo (2006) | ANALYSIS of HIV Type 1 Diversity in Pregnant Women from Four Latin American and Caribbean Countries | AIDS Res. Hum. Retroviruses 22 (11), 1186-1191 (2006) | 0 | |
121 94PR 121RT |
0 | Pending |
| Gonzales (2002) | EXTENDED spectrum of HIV-1 reverse transcriptase mutations in patients receiving multiple nucleoside analog inhibitors | AIDS 17 (6), 791-799 (2003) | 2e-97 | 287 287RT |
287 287RT |
100 | HIVDB |
| Gonzales (2003) | PROTEASE and Reverse Transcriptase Mutation Patterns in HIV Type 1 Isolates from Heavily Treated Persons: Comparison of Isolates from Northern California with Isolates from Other Regions | AIDS Res. Hum. Retroviruses 19 (10), 909-915 (2003) | 1e-173 | 100 38PR 62RT |
100 38PR 62RT |
100 | HIVDB |
| Gonzales (2003) | COLINEARITY of reverse transcriptase inhibitor resistance mutations detected by population-based sequencing | J. Acquir. Immune Defic. Syndr. 34 (4), 398-402 (2003) | 0 | 82 7PR 75RT |
82 8PR 75RT |
100 | HIVDB |
| Gonzalez Perez (2003) | EPIDEMIOLOGICAL and molecular characteristics of HIV and HTLV infection in Equatorial Guinea | Unpublished | 1e-169 | 41 41RT |
41 14PR 41RT |
100 | HIVDB |
| Gonzalez (2004) | DETECTION of Human Immunodeficiency Virus Type 1 Antiretroviral Resistance Mutations by High-Density DNA Probe Arrays | J. Clin. Microbiol. 42 (7), 2907-2912 (2004) | 0 | |
178 89PR 91RT |
0 | ARV Rx and/or other data are N/A |
| Gonzalez (2009) | Anti-Retroviral Therapy Resistance Mutations Present in the HIV Type 1 Subtype C pol and env Regions from Therapy Naive Patients in Zambia | Unpublished | 1e-175 | 50 50PR 50RT |
67 1PR 66RT |
74 | HIVDB |
| Gonzalez (2010) | Short communication: antiretroviral therapy resistance mutations present in the HIV type 1 subtype C pol and env regions from therapy-naive patients in Zambia | AIDS Res. Hum. Retroviruses 26 (7), 795-803 (2010) | 1e-171 | |
55 13PR 55RT |
0 | Pending |
| Gordon (2002) | MOLECULAR characteristics of human immunodeficiency virus type 1 subtype C viruses from KwaZulu-Natal, South Africa: implications for vaccine and antiretroviral control strategies | J. Virol. 77 (4), 2587-2599 (2003) | 2e-99 | 72 72PR 72RT |
75 75PR 75RT |
96 | HIVDB |
| Gottlieb (2009) | Emergence of multiclass drug-resistance in HIV-2 in antiretroviral-treated individuals in Senegal: implications for HIV-2 treatment in resource-limited west Africa | Clin. Infect. Dis. 48, 476-483 (2009) | 0 | |
169 169RT |
0 | Pending |
| Gottlieb (2011) | HIV-2 Integrase Variation in Integrase Inhibitor-Naive Adults in Senegal, West Africa | PLoS ONE 6 (7), E22204 (2011) | 1e-101 | |
122 122IN |
0 | Pending |
| Goujon (2000) | PHYLOGENETIC analyses indicate an atypical nurse-to-patient transmission of human immunodeficiency virus type 1 | J. Virol. 74 (6), 2525-2532 (2000) | 1e-137 | |
124 124RT |
0 | Evolution/quasispecies study |
| Graf (1998) | CLONING and characterization of a virtually full-length HIV type 1 genome from a subtype B'-Thai strain representing the most prevalent B-clade isolate in China | AIDS Res. Hum. Retroviruses 14 (3), 285-288 (1998) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Grant (2002) | ACCURACY of the TRUGENE HIV-1 Genotyping Kit | J. Clin. Microbiol. 41 (4), 1586-1593 (2003) | 1e-128 | |
18 9PR 9RT |
0 | ARV Rx and/or other data are N/A |
| Grisson (2004) | INFECTIOUS molecular clone of a recently transmitted pediatric human immunodeficiency virus clade C isolate from Africa: evidence of intraclade recombination | J. Virol. 78 (24), 14066-14069 (2004) | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Grossman (2004) | MUTATION D30N Is Not Preferentially Selected by Human Immunodeficiency Virus Type 1 Subtype C in the Development of Resistance to Nelfinavir | Antimicrob. Agents Chemother. 48 (6), 2159-2165 (2004) | 4e-50 | 100 100PR |
100 100PR |
100 | HIVDB |
| Guillon (1996) | COMPLETION of nucleotide sequences of non-syncytium-inducing and syncytium-inducing HIV type 1 variants isolated from the same patient | AIDS Res. Hum. Retroviruses 11 (12), 1537-1541 (1995) | 1e-165 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Guimaraes (2008) | IDENTIFICATION of two new CRF_BF in Rio de Janeiro State, Brazil | AIDS 22 (3), 433-435 (2008) | 0 | |
7 7RT 7IN |
0 | Case report(s) / study subset |
| Guimaraes (2009) | Close phylogenetic relationship between Angolan and Romanian HIV-1 subtype F1 isolates | Retrovirology 6, 39 (2009) | 0 | 9 4PR 9RT 4IN |
9 9RT 4IN |
100 | HIVDB |
| Guimaraes (2010) | Analysis of HIV-1 BF pr/rt recombinant strains from Rio de Janeiro/Brazil reveals multiple unrelated mosaic structures | Infect. Genet. Evol. (2010) In press | 1e-167 | |
24 24IN |
0 | Pending |
| Gunthard (1998) | HUMAN immunodeficiency virus replication and genotypic resistance in blood and lymph nodes after a year of potent antiretroviral therapy | J. Virol. 72 (3), 2422-2428 (1998) | 1e-128 | |
50 34PR 50RT |
0 | Evolution/quasispecies study |
| Gunthard (1999) | HIGHER selection pressure from antiretroviral drugs in vivo results in increased evolutionary distance in HIV-1 pol | Virology 259 (1), 154-165 (1999) | 1e-130 | |
72 72PR 72RT |
0 | DNAChip |
| Guo (2008) | Near Full-Length Genome Characterization of an HIV Type 1 CRF01_AE Strain from China | Unpublished | 0 | |
1 1RT 1IN |
0 | Case report(s) / study subset |
| Guo (2009) | First detection of a novel HIV Type 1 CRF01_AE/07_BC recombinant among an epidemiologically linked cohort of IDUs in Jiangsu, China | AIDS Res. Hum. Retroviruses 25 (4), 463-467 (2009) | 0 | 3 3PR 3RT 1IN |
3 1PR 3RT 1IN |
100 | HIVDB |
| Guo (2008) | EMERGENCE of first HIV-1 CRF01_AE/07_BC recombinant among an epidemiologically linked cohort of IDUs in Jiangsu, China | Unpublished | 1e-168 | 11 11PR 11RT |
12 11PR 8RT |
91 | Case report(s) / study subset |
| Gupta (2008) | GENETIC Variations in the Vif Gene from HIV-1 Infected Individuals from North India | Unpublished | 0.028 | |
4 4IN |
0 | Gene fragment(s) |
| Gupta (2008) | EVIDENCE for HIV-1 gag as a determinant of susceptibility to protease inhibitors using a full length subtype A and C gag-protease | AIDS. 2010 Jul 17;24(11):1651-5. | 0 | |
1 1RT 1IN |
0 | Pending |
| Gupta (2000) | CLONING and Sequencing of HIV-1 Gag (B-subtype) from Indian Strain | Unpublished | 1e-16 | |
1 1PR |
0 | Gene fragment(s) |
| Gurgo (1988) | ENVELOPE sequences of two new United States HIV-1 isolates | Virology 164 (2), 531-536 (1988) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Gurtler (1994) | A new subtype of human immunodeficiency virus type 1 (MVP-5180) from Cameroon | J. Virol. 68 (3), 1581-1585 (1994) | 1e-144 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Gurusinghe (1995) | REVERSE transcriptase mutations in sequential HIV-1 isolates in a patient with AIDS | J. Med. Virol. 46 (3), 238-243 (1995) | 1e-89 | |
7 7RT |
0 | Case report(s) / study subset |
| Gutierrez (2003) | PREVALENCE of HIV-1 non-B subtypes, syphilis, HTLV, and hepatitis B and C viruses among immigrant sex workers in Madrid, Spain | J. Med. Virol. 74 (4), 521-527 (2004) | 2e-49 | |
1 1PR |
0 | Case report(s) / study subset |
| Hachiya (2001) | RAPID and simple phenotypic assay for drug susceptibility of human immunodeficiency virus type 1 using CCR5-expressing HeLa/CD4(+) cell clone 1-10 (MAGIC-5) | Antimicrob. Agents Chemother. 45 (2), 495-501 (2001) | 1e-123 | |
45 25PR 20RT |
0 | ARV Rx and/or other data are N/A |
| Hachiya (2007) | A novel mutation, N348I, in HIV-1 Reverse transcriptase confers 2-class cross resistance for RTIs | Unpublished | 0 | |
16 16RT |
0 | Pending |
| Hachiya (2010) | A novel mutation, K70Q, in HIV-1 reverse transcriptase with Q151M enhances resistance to nucleoside RT inhibitors that remain active to Q151M complex | Unpublished | 0 | |
2 2RT |
0 | Unpublished |
| Haddad (2000) | EVIDENCE for late stage compartmentalization of HIV-1 resistance mutations between lymph node and peripheral blood mononuclear cells | AIDS 14 (15), 2273-2281 (2000) | 4e-96 | |
55 55RT |
0 | Evolution/quasispecies study |
| Hahn (1990) | MOLECULAR characterization of an attenuated human immunodeficiency virus type 2 isolate | Unpublished (1990) | 6e-99 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Hamers (2010) | HIV-1 Drug Resistance Mutations Are Present in Six Percent of Persons Initiating Antiretroviral Therapy in Lusaka, Zambia | J. Acquir. Immune Defic. Syndr. (2010) In press | 0 | 536 536PR 535RT |
536 43PR 530RT |
100 | HIVDB |
| Hamers (2010) | HIV-1 Drug Resistance Mutations Are Present in Six Percent of Persons Initiating Antiretroviral Therapy in Lusaka, Zambia | J. Acquir. Immune Defic. Syndr. 55 (1), 95-101 (20 | 2e-47 | 1 1PR 1RT |
1 1PR |
100 | HIVDB |
| Hamilton (2010) | Partial pol sequence of HIV-1 in Jamaica | Unpublished | 1e-149 | |
37 30PR 22RT |
0 | Unpublished |
| Hamilton (2010) | Analysis of protease and reverse transcriptase genes of HIV for antiretroviral drug resistance in Jamaican adults | Unpublished | 7e-52 | |
54 54PR |
0 | Unpublished |
| Hamilton (2010) | Analysis of protease and reverse transcriptase genes of HIV for antiretroviral drug resistance in Jamaican adults | Unpublished | 1e-48 | |
1 1PR |
0 | Unpublished |
| Hamkar (2010) | Assessing subtype and drug-resistance-associated mutations among antiretroviral-treated HIV-infected patients | AIDS 24 SUPPL 2, S85-S91 (2010) | 0 | 28 28PR 28RT |
28 1PR 27RT |
100 | HIVDB |
| Han (2009) | Epidemiologic and Genetic Characterization of Human Immunodeficiency Virus Type I Infection In Liaoning Province, China | J Acquir Immune Defic Syndr. 2010 Feb;53 Suppl 1:S27-33. | 1e-163 | |
79 49PR 64RT |
0 | Pending |
| Han (2006) | MOLECULAR Epidemiology of HIV in Liaoning Province, Northeastern China: Complex Findings in a Low Prevalence Area | Unpublished | 1e-170 | 88 88PR 72RT |
88 74PR 72RT |
100 | HIVDB |
| Han (2009) | Molecular analyses confirmed a HIV-1 heterosexual transmission chain in Guangzhou, China | Unpublished | 0 | |
4 2PR 4RT |
0 | Case report(s) / study subset |
| Handema (2002) | PREVALENCE of drug-resistance-associated mutations in antiretroviral drug-naive Zambians infected with subtype C HIV-1 | AIDS Res. Hum. Retroviruses 19 (2), 151-160 (2003) | 3e-88 | 53 25PR 28RT |
53 25PR 28RT |
100 | HIVDB |
| Hanna (2000) | PATTERNS of resistance mutations selected by treatment of human immunodeficiency virus type 1 infection with zidovudine, didanosine, and nevirapine | J. Infect. Dis. 181 (3), 904-911 (2000) | 1e-130 | |
14 14PR 14RT |
0 | ARV Rx and/or other data are N/A |
| Hanna (2002) | DRUG-SELECTED resistance mutations and non-B subtypes in antiretroviral-naive adults with established human immunodeficiency virus infection | J. Infect. Dis. 188 (7), 986-991 (2003) | 1e-126 | 176 88PR 88RT |
176 88PR 88RT |
100 | HIVDB |
| Harrigan (2007) | A 21-Base Pair Insertion/Duplication at Codon 69 of the HIV Type 1 Reverse Transcriptase in a Patient Undergoing Multiple Nucleoside Therapy | AIDS Res. Hum. Retroviruses 23 (7), 895-899 (2007) | 0 | |
10 10RT |
0 | Pending |
| Harris (2005) | GENOMIC Characterization of a Novel HIV Type 1 B/G Intersubtype Recombinant Strain from an Injecting Drug User in Germany | AIDS Res. Hum. Retroviruses 21 (7), 654-660 (2005) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Harris (2002) | AMONG 46 near full length HIV type 1 genome sequences from Rakai District, Uganda, subtype D and AD recombinants predominate | AIDS Res. Hum. Retroviruses 18 (17), 1281-1290 (2002) | 1e-166 | 45 45PR 44RT 45IN |
45 45PR 45RT 45IN |
100 | HIVDB |
| Harris (2003) | A cluster of HIV type 1 subtype C sequences from Ethiopia, observed in full genome analysis, is not sustained in subgenomic regions | AIDS Res. Hum. Retroviruses 19 (12), 1125-1133 (2003) | 0 | 6 6PR 6RT 6IN |
6 6PR 6RT 6IN |
100 | HIVDB |
| Hase (2010) | The different trend in epidemiology of HIV-1 in a local cohort within Japan | Unpublished | 0 | |
94 62PR 69RT |
0 | Unpublished |
| Hasegawa (1989) | GENOMIC divergence of HIV-2 from Ghana | AIDS Res. Hum. Retroviruses 5 (6), 593-604 (1989) | 1e-100 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Hassaine (2000) | CHARACTERIZATION of human immunodeficiency virus type 1 vif gene in long-term asymptomatic individuals | Virology 276 (1), 169-180 (2000) | 0.02 | |
42 42IN |
0 | Gene fragment(s) |
| Hatano (2009) | Evolution of integrase resistance during failure of integrase inhibitor-based antiretroviral therapy | J. Acquir. Immune Defic. Syndr. (2010) | 1e-167 | 134 134IN |
142 142IN |
94 | HIVDB |
| Hawkins (2009) | Clinical and genotypic findings in HIV-infected patients with the K65R mutation failing first line antiretroviral therapy in Nigeria | J. Acquir. Immune Defic. Syndr. 52, 2 (2010) | 0 | 336 336PR 336RT |
336 4PR 336RT |
100 | HIVDB |
| Held (2007) | CROSS-CLADE inhibition of recombinant human immunodeficiency virus type 1 (HIV-1), HIV-2, and simian immunodeficiency virus SIVcpz reverse transcriptases by RNA pseudoknot aptamers | J. Virol. 81 (10), 5375-5384 (2007) | 0 | |
1 1RT |
0 | Laboratory/experimental isolate |
| Henry (2005) | FACTORS Associated with Time to CD4 Count < 350 cells/mm3 After Treatment Interruption Following Effective Antiretroviral Therapy (ART) +/- Interleukin-2 (IL-2): Results of a Pilot Study (ACTG A5102) | Unpublished | 0 | |
55 47PR 55RT |
0 | Pending |
| Heredia (1997) | EVIDENCE of HIV-2 infection in Equatorial Guinea (Central Africa): Partial genetic analysis of a B subtype virus | AIDS Res. Hum. Retroviruses 13, 437-439 (1997) | 4.2 | 1 1RT |
1 1RT |
100 | HIVDB |
| Heredia (2001) | GENETIC analysis of an HIV type 2 subtype B virus from a Spanish individual with AIDS | AIDS Res. Hum. Retroviruses 13 (10), 899-900 (1997) | 2e-86 | 1 1RT |
1 1RT |
100 | HIVDB |
| Hermankova (2001) | HIV-1 drug resistance profiles in children and adults with viral load of <50 copies/ml receiving combination therapy | JAMA 286 (2), 196-207 (2001) | 1e-126 | |
47 47PR 47RT |
0 | Evolution/quasispecies study |
| Herring (2001) | NATURAL Variation in HIV-1 Integrase | Unpublished | 1e-165 | 81 81IN |
81 81IN |
100 | HIVDB |
| Herring (2005) | POTENTIAL drug resistance polymorphisms in the integrase gene of HIV type 1 subtype A | AIDS Res. Hum. Retroviruses 20 (9), 1010-1014 (2004) | 1e-162 | 8 8IN |
8 8IN |
100 | HIVDB |
| Heuverswyn (2007) | GENETIC diversity and phylogeographic clustering of SIVcpzPtt in wild chimpanzees in Cameroon | Virology 368 (1), 155-171 (2007) | 1e-100 | |
8 8IN |
0 | Pending |
| Hierholzer (2002) | HIV type 1 strains from East and West Africa are intermixed in Sudan | AIDS Res. Hum. Retroviruses 18 (15), 1163-1166 (2002) | 1e-130 | 30 30PR 30RT |
30 30PR 30RT |
100 | HIVDB |
| Hierholzer (2003) | MOLECULAR Epidemiology of HIV Type 1 in Ecuador, Peru, Bolivia, Uruguay, and Argentina | AIDS Res. Hum. Retroviruses 18 (18), 1339-1350 (2002) | 1e-164 | 10 10PR 10RT 10IN |
10 10PR 10RT 10IN |
100 | HIVDB |
| Hirano (2010) | Characterization of drug-resistance mutation profile kinetics in HIV-1 with infectious molecular clones | Unpublished | 0 | |
6 6RT 6IN |
0 | Laboratory/experimental isolate |
| Hirigoyen (2005) | USE of Sequence Data Generated in the Bayer TruGene Genotyping Assay To Recognize and Characterize Non-Subtype-B Human Immunodeficiency Virus Type 1 Strains | J. Clin. Microbiol. 43 (10), 5263-5271 (2005) | 1e-144 | |
29 6PR 29RT |
0 | ARV Rx and/or other data are N/A |
| Hirsch (1997) | A molecularly cloned, pathogenic, neutralization-resistant simian immunodeficiency virus, SIVsmE543-3 | J. Virol. 71 (2), 1608-1620 (1997) | 1e-100 | 1 1PR 1RT |
1 1RT 1IN |
100 | HIVDB |
| Hirsch (1993) | A distinct African lentivirus from Sykes' monkeys | J. Virol. 67 (3), 1517-1528 (1993) | 3e-91 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Hirsch (1993) | DIRECT Submission | Unpublished | 1e-100 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Hirsch (1995) | INDUCTION of AIDS by simian immunodeficiency virus from an African green monkey: species-specific variation in pathogenicity correlates with the extent of in vivo replication | J. Virol. 69 (2), 955-967 (1995) | 1e-06 | 1 1PR 1RT 1IN |
1 1PR 1RT |
100 | HIVDB |
| Hirsch (1999) | CHARACTERIZATION of a novel simian immunodeficiency virus (SIV) from L'Hoest monkeys (Cercopithecus l'hoesti): implications for the origins of SIVmnd and other primate lentiviruses | J. Virol. 73 (2), 1036-1045 (1999) | 0.017 | 1 1PR 1RT 1IN |
1 1RT |
100 | HIVDB |
| Hirsch (2000) | HUMAN retrovirses, cancer and AIDS: approach to prevention and therapy | Unpublished | 4.2 | 1 1PR 1RT 1IN |
1 1PR 1RT |
100 | HIVDB |
| Ho (2009) | Drug-Associated Changes in Amino Acid Residues in Gag p2, p7NC, and p6Gag/p6Pol in Human Immunodeficiency Virus Type 1 (HIV-1) Display a Dominant Effect on Replicative Fitness and Drug Response | Unpublished | 3e-50 | |
9 9PR |
0 | Case report(s) / study subset |
| Ho (2010) | Genetic determinants in HIV-1 Gag and Env V3 are related to viral response to combination antiretroviral therapy with a protease inhibitor | AIDS 23 (13), 1631-1640 (2009) | 1e-52 | |
402 402PR |
0 | Pending |
| Hoelscher (2001) | HIGH proportion of unrelated HIV-1 intersubtype recombinants in the Mbeya region of southwest Tanzania | AIDS 15 (12), 1461-1470 (2001) | 1e-166 | 9 9PR 9RT 9IN |
9 9PR 9RT 9IN |
100 | HIVDB |
| Holguin Fernandez (2008) | RAPID Increase of HIV-1 Non-B Subtypes and Recombinants Among Newly Diagnosed Native Spaniards | Curr HIV Res. 2008 Jun;6(4):327-34. | 0 | |
5 1PR 4RT |
0 | Pending |
| Holguin (1999) | HUMAN immunodeficiency virus type 1 subtypes circulating in Portugal | Unpublished | 1e-126 | 29 29PR |
31 31PR |
93 | HIVDB |
| Holguin (2000) | HIV-1 subtype J recombinant viruses in Spain | AIDS Res. Hum. Retroviruses 18 (7), 523-529 (2002) | 1e-90 | 18 5PR 13RT |
19 6PR 13RT |
94 | HIVDB |
| Holguin (2000) | PROTEASE gene analysis of HIV type 1 non-B subtypes in Spain | AIDS Res. Hum. Retroviruses 16 (14), 1395-1403 (2000) | 2e-92 | 15 15PR |
15 15PR |
100 | HIVDB |
| Holguin (2001) | PREVALENCE of human immunodeficiency virus type 1 (HIV-1) non-B subtypes in foreigners living in Madrid, Spain, and comparison of the performances of the AMPLICOR HIV-1 MONITOR version 1.0 and the new automated version 1.5 | J. Clin. Microbiol. 39 (5), 1850-1854 (2001) | 1e-126 | 32 32PR |
32 32PR |
100 | HIVDB |
| Holguin (2001) | HIV-1 subtype J recombinant viruses in Spain | AIDS Res. Hum. Retroviruses 18 (7), 523-529 (2002) | 3e-69 | 1 1RT |
1 1RT |
100 | HIVDB |
| Holguin (2002) | HIGH prevalence of HIV-1 subtype G and natural polymorphisms at the protease gene among HIV-infected immigrants in Madrid | AIDS 16 (8), 1163-1170 (2002) | 1e-102 | 43 43PR |
44 44PR |
97 | HIVDB |
| Holguin (2002) | INCREASING prevalence and heterogeneous nature of HIV-1 subtype G recombinants spreading in Spain | Unpublished | 1e-123 | 70 38PR 32RT |
70 38PR 32RT |
100 | HIVDB |
| Holguin (2002) | THE Canary Islands (Spain) as a key entrance of HIV-1 non-B subtypes in Southern Europe | Unpublished | 2e-98 | 18 1PR 17RT |
18 1PR 17RT |
100 | HIVDB |
| Holguin (2003) | HETEROGENEOUS nature of HIV-1 recombinants spreading in Spain | J. Med. Virol. 75 (3), 374-380 (2005) | 5e-83 | 5 3PR 2RT |
5 3PR 2RT |
100 | HIVDB |
| Holguin (2003) | DIFFERENCES in the Length of Gag Proteins among Different HIV Type 1 Subtypes | AIDS Res. Hum. Retroviruses 21 (10), 886-893 (2005) | 1e-50 | 46 46PR |
46 46PR |
100 | HIVDB |
| Holguin (2004) | IMPACT of frequent natural polymorphisms at the protease gene on the in vitro susceptibility to protease inhibitors in HIV-1 non-B subtypes | J. Clin. Virol. 31 (3), 215-220 (2004) | 3e-50 | 21 21PR |
21 21PR |
100 | HIVDB |
| Holguin (2004) | HIV-1 subtypes in Spain | HIV Med. 2005 Sep;6(5):313-20. | 8e-51 | |
14 14PR |
0 | Pending |
| Holguin (2004) | DIFFERENCES in the Length of Gag Proteins among Different HIV Type 1 Subtypes | AIDS Res. Hum. Retroviruses 21 (10), 886-893 (2005) | 4e-53 | 56 56PR |
56 56PR |
100 | HIVDB |
| Holguin (2006) | INTRODUCTION of Non-B Subtypes among Spaniards Newly Diagnosed with HIV Type 1 in the Canary Islands | AIDS Res. Hum. Retroviruses 23 (4), 498-502 (2007) | 0 | 18 17PR 18RT |
25 11PR 22RT |
72 | HIVDB |
| Holguin (2007) | NEGATIVE line immunoassay in a HIV-1 subtype D- infected patient with positive serological tests for HIV | Unpublished | 1e-50 | |
1 1PR |
0 | Case report(s) / study subset |
| Holguin (2007) | INCREASE of prevalence of HIV-1 non-B subtypes and recombinants among Spanish native population from 2000 to 2007 | Curr HIV Res. 2008 Jun;6(4):327-34. | 0 | |
208 148PR 191RT |
0 | Pending |
| Holguin (2008) | GENETIC characterization of complex inter-recombinant HIV-1 strains circulating in Spain and reliability of distinct rapid subtyping tools | J. Med. Virol. 80 (3), 383-391 (2008) | 0 | 5 5PR 4RT 1IN |
5 4RT 3IN |
100 | HIVDB |
| Holguin (2008) | RAPID Increase of HIV-1 Non-B Subtypes and Recombinants Among Newly Diagnosed Native Spaniards | Unpublished | 0 | |
48 17PR 37RT |
0 | Pending |
| Holguin (2008) | HIV-1 subtypes in newly diagnosed patients in Gran Canaria, Spain (2004-2006) | Unpublished | 0 | |
120 67PR 120RT |
0 | Pending |
| Holguin (2008) | Increase of prevalence of HIV-1 non-B subtypes and recombinants among Spanish native population from 2000 to 2007 | Unpublished | 5e-49 | |
8 8PR |
0 | Pending |
| Holguin (2011) | Drug resistance prevalence in human immunodeficiency virus type 1 infected pediatric populations in Honduras and El Salvador during 1989-2009 | Pediatr. Infect. Dis. J. 30 (5), E82-E87 (2011) | 5e-52 | |
51 51PR |
0 | Pending |
| Holler (1994) | HIV1 integrase expressed in Escherichia coli from a synthetic gene | Gene 136 (1-2), 323-328 (1993) | 1e-165 | |
1 1IN |
0 | Laboratory/experimental isolate |
| Holzmayer (2005) | NEAR-FULL-LENGTH genomic sequence of a human immunodeficiency type 1 subtype g strain from cameroon | AIDS Res. Hum. Retroviruses 21 (5), 414-419 (2005) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Holzmayer (2009) | Characterization of genetically diverse HIV type 1 from a London cohort: near full-length genomic analysis of a subtype H strain | AIDS Res. Hum. Retroviruses 25 (7), 721-726 (2009) | 0 | 15 1PR 1RT 15IN |
15 1RT 15IN |
100 | HIVDB |
| Hong (2007) | CHARACTERISTICS of a novel resistant HIV-1 strain against Tenofovir | Unpublished | 1e-144 | |
1 1RT |
0 | Laboratory/experimental isolate |
| Hoof (2010) | Interdisciplinary analysis of HIV-specific CD8(+) T cell responses against variant epitopes reveals restricted TCR promiscuity | J. Immunol. 184 (9), 5383-5391 (2010) | 1e-152 | |
24 14PR 17RT |
0 | Pending |
| Hooker (1996) | AN in vivo mutation from leucine to tryptophan at position 210 in human immunodeficiency virus type 1 reverse transcriptase contributes to high-level resistance to 3'-azido-3'-deoxythymidine | J. Virol. 70 (11), 8010-8018 (1996) | 2e-91 | |
2 2RT |
0 | HIVDB |
| Howard (1997) | SEQUENCE analysis of the glycoprotein 120 coding region of a new HIV type 1 subtype A strain (HIV-1IbNg) from Nigeria | AIDS Res. Hum. Retroviruses 10 (12), 1755-1757 (1994) | 1e-164 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Hu (2003) | CHARACTERIZATION and Comparison of Recombinant Simian Immunodeficiency Virus from Drill (Mandrillus leucophaeus) and Mandrill (Mandrillus sphinx) Isolates | J. Virol. 77 (8), 4867-4880 (2003) | 1e-122 | 2 2PR 2RT 2IN |
2 1PR 2RT 2IN |
100 | HIVDB |
| Hu (2007) | VIROLOGIC characterization of human immunodeficiency virus type 1 with a codon 70 deletion in reverse transcriptase | Unpublished | 0 | |
1 1RT |
0 | Case report(s) / study subset |
| Huang (2003) | SEQUENCE characterization of the protease and partial reverse transcriptase proteins of the NED panel, an international HIV type 1 subtype reference and standards panel | AIDS Res. Hum. Retroviruses 19 (4), 321-328 (2003) | 1e-130 | 44 44PR 44RT |
44 44PR 44RT |
100 | HIVDB |
| Huang (2009) | Complex mosaic composition of near full-length genomes of two NED (NIH-ENVA-DOD) subtype panel HIV type 1 strains, BCF-Dioum and BCF-Kita, originating from the Democratic Republic of Congo (DRC) | AIDS Res. Hum. Retroviruses 25 (10), 1039-1043 (20 | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Huang (2006) | GENETIC characterization of three CRF01_AE full-length HIV type 1 sequences from Fujian Province, China | Chin. Med. J. 119 (19), 1622-1628 (2006) | 0 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Huang (2006) | GENETIC Characterization of CRF01_AE Full-Length Human Immunodeficiency Virus Type 1 Sequences from Fujian, China | AIDS Res. Hum. Retroviruses 23 (4), 569-574 (2007) | 0 | 10 10PR 10RT 10IN |
10 7PR 10RT 10IN |
100 | HIVDB |
| Huang (1998) | COMPLETE sequence of type B HIV-1 Taiwan strain | Unpublished | 1e-162 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Hudelson (2010) | Emergence and persistence of nevirapine resistance in breast milk after single-dose nevirapine administration | AIDS 24 (4), 557-561 (2010) | 0 | |
60 13PR 60RT |
0 | Pending |
| Hue (2003) | HIV-1 pol gene variation is sufficient for reconstruction of transmissions in the era of antiretroviral therapy | AIDS 18 (5), 719-728 (2004) | 1e-130 | |
138 138PR 138RT |
0 | ARV Rx and/or other data are N/A |
| Hue (2009) | Demonstration of sustained drug-resistant human immunodeficiency virus type 1 lineages circulating among treatment-naive individuals | J. Virol. 83 (6), 2645-2654 (2009) | 0 | |
41 24PR 32RT |
0 | Evolution/quasispecies study |
| Hue (2011) | HIV-1 in a rural coastal town in Kenya shows multiple introductions with many subtypes and much recombination | AIDS Res. Hum. Retroviruses (2011) In press | 1e-177 | 32 32PR 32RT |
159 1PR 159RT |
20 | HIVDB |
| Hue (2004) | GENETIC analysis reveals the complex structure of HIV-1 transmission within defined risk groups | Proc. Natl. Acad. Sci. U.S.A. 102 (12), 4425-4429 (2005) | 1e-126 | |
223 223PR 223RT |
0 | ARV Rx and/or other data are N/A |
| Huet (1995) | GENETIC organization of a chimpanzee lentivirus related to HIV-1 | Nature 345 (6273), 356-359 (1990) | 1e-157 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Huet (1989) | A highly defective HIV-1 strain isolated from a healthy Gabonese individual presenting an atypical western blot | AIDS 3 (11), 707-715 (1989) | 1e-164 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Hughes (2009) | Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom | PLoS Pathog. 5 (9), E1000590 (2009) | 0 | |
301 43PR 266RT |
0 | Evolution/quasispecies study |
| Hunt (2002) | CHARACTERISATION of near-full length genome sequences of three South African human immunodeficiency virus type 1 subtype C isolates | Virus Genes 26 (1), 49-56 (2003) | 1e-164 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Ibanez (2000) | HUMAN immunodeficiency virus type 1 population bottleneck during indinavir therapy causes a genetic drift in the env quasispecies | J. Gen. Virol. 81 (Pt 1), 85-95 (2000) | 1e-121 | |
86 86PR |
0 | Evolution/quasispecies study |
| Ibe (2008) | TREND of drug-resistant HIV type 1 emergence among therapy-naive patients in Nagoya, Japan: an 8-year surveillance from 1999 to 2006 | AIDS Res. Hum. Retroviruses 24 (1), 7-14 (2008) | 1e-139 | 363 363PR 363RT |
363 354PR 56RT |
100 | HIVDB |
| Ibe (2008) | ANALYSIS of near full-length genomic sequences of drug-resistant HIV-1 spreading among therapy-naive individuals in Nagoya, Japan: amino acid mutations associated with viral replication activity | AIDS Res. Hum. Retroviruses 24 (8), 1121-1125 (2008) | 0 | 12 12PR 12RT 12IN |
12 9PR 12RT 12IN |
100 | HIVDB |
| Ibe (2010) | HIV-2 CRF01_AB: first circulating recombinant form of HIV-2 | J. Acquir. Immune Defic. Syndr. 54 (3), 241-247 (2 | 0 | |
3 3RT 3IN |
0 | Pending |
| Ida (2000) | HORIZONTAL Transmission of HIV-1 from Hemophiliac Son to Father | Unpublished | 1e-133 | |
34 34RT |
0 | Evolution/quasispecies study |
| Ignacio (2008) | NOVEL Protease Insertion in HIV Type-1 | AIDS Res. Hum. Retroviruses (2008) In press | 1e-178 | |
1 1RT |
0 | Case report(s) / study subset |
| Imamichi (2001) | HUMAN immunodeficiency virus type 1 quasi species that rebound after discontinuation of highly active antiretroviral therapy are similar to the viral quasi species present before initiation of therapy | J. Infect. Dis. 183 (1), 36-50 (2001) | 1e-126 | |
644 644PR |
0 | Evolution/quasispecies study |
| Imamichi (2011) | Rerunning the Tape of Evolution: An Empirical Example with HIV | Unpublished | 3e-52 | |
50 50PR |
0 | Evolution/quasispecies study |
| Iqbal (2010) | Primary HIV-1 Drug Resistance and Polymorphic Patterns Among Injecting Drug Users (IDUs) in Chennai, Southern India | J Int Assoc Physicians AIDS Care 8, 323-327 (2009) | 4e-49 | 4 4PR |
4 4PR |
100 | HIVDB |
| Isarangkura-na-ayuthaya (2010) | Appearance of Drug Resistance-Associated Mutations in Human Immunodeficiency Virus Type 1 CRF01_AE Integrase Derived from Drug-Naive Thai Patients | AIDS Res. Hum. Retroviruses (2010) In press | 1e-165 | 78 78IN |
78 78IN |
100 | HIVDB |
| Ishizaki (2009) | Profile of HIV Type 1 Infection and Genotypic Resistance Mutations to Antiretroviral Drugs in Treatment-Naive HIV Type 1-Infected Individuals in Hai Phong, Viet Nam | AIDS Res. Hum. Retroviruses 25 (2), 175-182 (2009) | 1e-152 | 410 408PR 389RT |
410 333PR 218RT |
100 | HIVDB |
| Iweriebor (2010) | Molecular epidemiology of HIV in two highly endemic areas of north-eastern South Africa | Unpublished | 1e-168 | 53 13PR 40RT |
59 15PR 44RT |
89 | HIVDB |
| Iweriebor (2010) | Near full-length genomic analysis of an HIV type 1 subtype A1/C recombinant isolate from Limpopo province in South Africa | Unpublished | 0 | |
1 1RT 1IN |
0 | Unpublished |
| Iweriebor (2010) | Genetic Characterization of HIV-1 Unique C/CRF11_cpx Recombinant Form from Limpopo Province, South Africa | Unpublished | 0 | |
2 1RT 1IN |
0 | Unpublished |
| Izopet (1998) | EVOLUTION of total and integrated HIV-1 DNA and change in DNA sequences in patients with sustained plasma virus suppression | Virology 302 (2), 393-404 (2002) | 1e-129 | |
278 18PR 260RT |
0 | Evolution/quasispecies study |
| Izopet (2000) | SHIFT in HIV resistance genotype after treatment interruption and short-term antiviral effect following a new salvage regimen | AIDS 14 (15), 2247-2255 (2000) | 1e-133 | |
152 76PR 76RT |
0 | Evolution/quasispecies study |
| Izopet (2002) | EVOLUTION of human immunodeficiency virus type 1 populations after resumption of therapy following treatment interruption and shift in resistance genotype | J. Infect. Dis. 185 (10), 1506-1510 (2002) | 1e-133 | |
306 149PR 157RT |
0 | Evolution/quasispecies study |
| Jackson (2002) | IDENTIFICATION of the K103N resistance mutation in Ugandan women receiving nevirapine to prevent HIV-1 vertical transmission | AIDS 14 (11), F111-F115 (2000) | 3e-22 | 15 15RT |
15 15RT |
100 | HIVDB |
| Jacobs (2007) | COMPLETE Genome Sequencing of a Non-syncytium-Inducing HIV Type 1 Subtype D Strain from Cape Town, South Africa | AIDS Res. Hum. Retroviruses 23 (12), 1575-1578 (2007) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Jacobs (2008) | MOLECULAR Analysis of HIV Type 1 vif Sequences from Cape Town, South Africa | AIDS Res. Hum. Retroviruses 24 (7), 991-994 (2008) | 0.027 | |
1 1IN |
0 | Gene fragment(s) |
| Jacobs (2008) | PHYLOGENETIC Diversity and Low Level Antiretroviral Resistance Mutations in HIV Type 1 Treatment-Naive Patients from Cape Town, South Africa | AIDS Res. Hum. Retroviruses 24 (7), 1009-1012 (2008) | 1e-149 | 103 94PR 88RT |
103 45PR 79RT |
100 | HIVDB |
| Jacobson (2006) | EVIDENCE That Intermittent Structured Treatment Interruption, but Not Immunization with ALVAC-HIV vCP1452, Promotes Host Control of HIV Replication: The Results of AIDS Clinical Trials Group 5068 | J. Infect. Dis. 194 (5), 623-632 (2006) | 6e-51 | |
2 2PR |
0 | Case report(s) / study subset |
| Jain (2010) | Differential Persistence of Transmitted HIV-1 Drug Resistance Mutation Classes | J. Infect. Dis. 203 (8), 1174-1181 (2011) | 8e-52 | |
78 78PR |
0 | Pending |
| Jallow (2006) | VIROLOGICAL and immunological response to Combivir and emergence of drug resistance mutations in a cohort of HIV-2 patients in The Gambia | AIDS 20 (10), 1455-1458 (2006) | 1e-160 | |
28 28RT |
0 | Pending |
| Jallow (2007) | DEVELOPMENT and Evaluation of an Oligonucleotide Ligation Assay for Detection of Drug Resistance-Associated Mutations in the Human Immunodeficiency Virus Type 2 pol Gene | J. Clin. Microbiol. 45 (5), 1565-1571 (2007) | 1e-160 | |
26 26RT |
0 | Pending |
| Jallow (2009) | Presence of a multidrug-resistance mutation in an HIV-2 variant infecting a treatment-naive individual in Caio, Guinea Bissau | Clin. Infect. Dis. 48 (12), 1790-1793 (2009) | 1e-157 | |
1 1RT |
0 | Pending |
| Jallow (2009) | Virological response to highly active antiretroviral therapy in patients infected with human immunodeficiency virus type 2 (HIV-2) and in patients dually infected with HIV-1 and HIV-2 in the Gambia and emergence of drug-resistant variants | J. Clin. Microbiol. 47 (7), 2200-2208 (2009) | 1e-159 | |
11 11RT |
0 | Pending |
| Janin (2009) | Low Prevalence of Drug Resistance Transmitted Virus in HIV Type 1-Infected ARV-Naive Patients in Cambodia | AIDS Res. Hum. Retroviruses 25 (5), 543-545 (2009) | 8e-51 | 48 48PR |
48 48PR |
100 | HIVDB |
| Janini (1996) | HORIZONTAL and vertical transmission of human immunodeficiency virus type 1 dual infections caused by viruses of subtypes B and C | J. Infect. Dis. 177 (1), 227-231 (1998) | 1e-130 | 39 39PR |
42 42PR |
92 | HIVDB |
| Janini (2001) | HUMAN immunodeficiency virus type 1 DNA sequences genetically damaged by hypermutation are often abundant in patient peripheral blood mononuclear cells and may be generated during near-simultaneous infection and activation of CD4(+) T cells | J. Virol. 75 (17), 7973-7986 (2001) | 1e-133 | |
350 350PR |
0 | ARV Rx and/or other data are N/A |
| Janssens (1995) | DIRECT Submission | Unpublished | 3e-42 | |
1 1IN |
0 | Gene fragment(s) |
| Janssens (1995) | FURTHER evidence of the presence of genetically aberrant HIV-1 strains in Cameroon and Gabon | AIDS 8 (7), 1012-1013 (1994) | 8e-41 | |
2 2IN |
0 | Gene fragment(s) |
| Janssens (2000) | HIV-1 subtype H near-full length genome reference strains and analysis of subtype-H-containing inter-subtype recombinants | AIDS 14 (11), 1533-1543 (2000) | 1e-162 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Janssens (2000) | NEAR full-length genome analysis of HIV type 1 CRF02.AG subtype C and CRF02.AG subtype G recombinants | AIDS Res. Hum. Retroviruses 16 (12), 1183-1189 (2000) | 1e-162 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Jenwitheesuk (2002) | PREVALENCE of genotypic HIV-1 drug resistance in Thailand, 2002 | Ann Clin Microbiol Antimicrob 2 (1), 4 (2003) | 1e-126 | |
170 82PR 88RT |
0 | ARV Rx and/or other data are N/A |
| Jin (1994) | MOSAIC genome structure of simian immunodeficiency virus from west African green monkeys | EMBO J. 13 (12), 2935-2947 (1994) | 1e-124 | 1 1PR 1RT 1IN |
2 1PR 2RT 1IN |
50 | HIVDB |
| Jinnopat (2009) | Impact of Amino Acid Variations in Gag and Protease of Human Immunodeficiency Virus Type 1 CRF01_AE strains on Drug Susceptibility of Virus to Protease Inhibitors | J. Acquir. Immune Defic. Syndr. (2009) In press | 3e-50 | 5 5PR |
5 5PR |
100 | Case report(s) / study subset |
| Johnson (1990) | SIMIAN immunodeficiency viruses from African green monkeys display unusual genetic diversity | J. Virol. 64 (3), 1086-1092 (1990) | 1e-111 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Johnson (2001) | VERTICAL transmission of multidrug-resistant human immunodeficiency virus type 1 (HIV-1) and continued evolution of drug resistance in an HIV-1-infected infant | J. Infect. Dis. 183 (11), 1688-1693 (2001) | 1e-112 | |
6 6PR 6RT |
0 | Evolution/quasispecies study |
| Johnson (2007) | DETECTION of HIV Drug Resistance at Regimen Failure during Sequential 3-Drug versus Initial 4-Drug HAART Strategies in AIDS Clinical Trials Group Protocol 384 | J. Acquir. Immune Defic. Syndr. (2007) In press | 0 | 731 731PR 731RT |
731 711PR 151RT |
100 | HIVDB |
| Johnson (2007) | Detection of HIV Drug Resistance at Regimen Failure during Sequential 3-Drug versus Initial 4-Drug HAART Strategies in AIDS Clinical Trials Group Protocol 384 | J. Acquir. Immune Defic. Syndr. (2007) In press | 3e-47 | 3 3PR 3RT |
3 3PR |
100 | HIVDB |
| Johnston (2004) | PANEL of prototypical infectious molecular HIV-1 clones containing multiple nucleoside reverse transcriptase inhibitor resistance mutations | AIDS 19 (7), 731-733 (2005) | 1e-158 | 2 2RT |
2 2RT |
100 | HIVDB |
| Jonassen (1997) | SEQUENCE analysis of HIV-1 group O from Norwegian patients infected in the 1960s | Virology 231 (1), 43-47 (1997) | 1e-102 | 3 1PR 1RT 1IN |
4 2PR 1RT 2IN |
75 | HIVDB |
| Jonassen (2000) | INTERSUBTYPE recombinant HIV type 1 involving HIV-MAL-like and subtype H-like sequence in four Norwegian cases | AIDS Res. Hum. Retroviruses 16 (1), 49-58 (2000) | 1e-162 | 1 1PR 1RT 1IN |
7 5PR 2RT 3IN |
14 | HIVDB |
| Jones (2005) | GENETIC Linkage of Nevirapine Resistance Mutations in HIV Type 1 Seven Days after Single-Dose Nevirapine | AIDS Res. Hum. Retroviruses 21 (4), 319-324 (2005) | 0 | 2 2PR 2RT |
2 1PR 2RT |
100 | HIVDB |
| Jones (2009) | In-depth analysis of the origins of HIV type 1 subtype C in South America | AIDS Res. Hum. Retroviruses 25 (10), 951-959 (2009 | 0 | 4 4PR 4RT |
4 4RT |
100 | HIVDB |
| Jorgensen (2000) | GENOTYPIC and phenotypic nevirapine resistance correlates with virological failure during salvage therapy including abacavir and nevirapine | Antivir. Ther. (Lond.) 5 (3), 187-194 (2000) | 1e-127 | 73 37PR 36RT |
76 39PR 37RT |
96 | HIVDB |
| Jorgensen (2002) | GENOTYPIC and phenotypic resistance in cultured HIV reflect the genotype and phenotype of viral RNA in plasma | Unpublished | 1e-108 | |
34 17PR 17RT |
0 | Case report(s) / study subset |
| Jorgensen (2002) | PREVALENCE of drug resistance mutations and non-B subtypes in newly diagnosed HIV-1 patients in Denmark | Unpublished | 1e-128 | 97 96PR 97RT |
97 96PR 97RT |
100 | HIVDB |
| Jost (2002) | A patient with HIV-1 superinfection | N. Engl. J. Med. 347 (10), 731-736 (2002) | 1e-107 | |
4 2PR 2RT |
0 | Case report(s) / study subset |
| Jullaksorn (2010) | Sustained appearance of drug resistance-associated mutations in HIV-1 CRF01_AE protease and reverse transcriptase derived from protease inhibitor-naive Thai patients | Southeast Asian J. Trop. Med. Public Health 41 (2) | 0 | 271 118PR 153RT |
271 118PR 153RT |
100 | HIVDB |
| K'Aluoch (2004) | HIGH Frequency of Recombinant A and D HIV-1 subtypes in a Population from Uganda | (in) 12TH CONFERENCE ON RETROVIRUSES AND OPPORTUNISTIC INFEC | 0 | 29 29PR 29RT |
29 29PR 29RT |
100 | HIVDB |
| K'Aluoch (2005) | CHARACTERIZATION of HIV-1 Subtypes and Recombinants in a Uganda Cohort by use of the gag, nef and pol Genes | Unpublished | 0 | 37 34PR 37RT |
37 34PR 37RT |
100 | HIVDB |
| Kalmar (2009) | Evaluation of HIV-1 resistance to antiretroviral drugs among 150 patients after 6 months of therapeutic interruption | Unpublished | 1e-172 | |
74 56PR 35RT |
0 | Unpublished |
| Kandathil (2007) | A Comparison of Interpretation by Three Different HIV Type 1 Genotypic Drug Resistance Algorithms Using Sequences from Non-Clade B HIV Type 1 Strains | AIDS Res. Hum. Retroviruses 25 (3), 315-318 (2009) | 1e-169 | 115 112PR 115RT |
124 17PR 120RT |
92 | HIVDB |
| Kandathil (2008) | Does India need a transmitted drug resistance surveillance network for HIV? | Unpublished | 1e-166 | 2 2PR 2RT |
2 2RT |
100 | HIVDB |
| Kantor (2002) | EVOLUTION of Primary Protease Inhibitor Resistance Mutations during Protease Inhibitor Salvage Therapy | Antimicrob. Agents Chemother. 46 (4), 1086-1092 (2002) | 1e-126 | 76 75PR 1RT |
114 114PR |
66 | HIVDB |
| Kantor (2003) | HIV-1 subtype C reverse transcriptase and protease genotypes in Zimbabwean patients failing antiretroviral therapy | AIDS Res. Hum. Retroviruses 18 (18), 1407-1413 (2002) | 1e-87 | 20 20PR 20RT |
21 21PR 21RT |
95 | HIVDB |
| Kantor (2004) | EVOLUTION of resistance to drugs in HIV-1-infected patients failing antiretroviral therapy | AIDS 18 (11), 1503-1511 (2004) | 1e-180 | 204 96PR 108RT |
427 209PR 218RT |
47 | HIVDB |
| Kantor (2005) | IMPACT of HIV-1 Subtype and Antiretroviral Therapy on Protease and Reverse Transcriptase Genotype: Results of a Global Collaboration | PLoS Med 2 (4), E112 (2005) | 0 | 884 292PR 592RT |
1018 394PR 624RT |
86 | HIVDB |
| Kao (2011) | Surveillance of HIV Type 1 Recent Infection and Molecular Epidemiology Among Different Risk Behaviors Between 2007 and 2009 After the HIV Type 1 CRF07_BC Outbreak in Taiwan | AIDS Res. Hum. Retroviruses 27 (7), 745-749 (2011) | 0 | 381 381PR 378RT |
381 316PR 378RT |
100 | HIVDB |
| Karchava (2006) | PREVALENCE of drug-resistance mutations and non-subtype B strains among HIV-infected infants from New York State | J. Acquir. Immune Defic. Syndr. 42 (5), 614-619 (2006) | 0 | |
14 9PR 13RT |
0 | Case report(s) / study subset |
| Karlsson (2001) | RECENT origin of HIV-1 variants in resting CD4+ T-lymphocytes in untreated and suboptimally treated subjects | Unpublished | 1e-126 | |
134 134PR 133RT |
0 | Evolution/quasispecies study |
| Karlsson (2007) | SEQUENTIAL Broadening of CTL Responses in Early HIV-1 Infection Is Associated with Viral Escape | PLoS ONE 2, E225 (2007) | 1e-141 | |
83 81PR 83RT |
0 | Evolution/quasispecies study |
| Karlsson (2007) | ANTIRETROVIRAL drug therapy alters the profile of human immunodeficiency virus type 1-specific T-cell responses and shifts the immunodominant cytotoxic T-lymphocyte response from gag to pol | J. Virol. 81 (20), 11543-11548 (2007) | 1e-142 | |
10 4PR 8RT |
0 | Case report(s) / study subset |
| Kasang (2010) | High prevalence of transmitted drug resistance mutations in therapy naive HIV-1 infected patients in Mwanza, Lake Victoria zone, Tanzania | Unpublished | 0 | 89 89PR 89RT |
89 15PR 89RT |
100 | HIVDB |
| Kassaye (2008) | Envelope co-receptor tropism, drug resistance, and viral evolution among subtype C HIV-1 infected individuals receiving non-suppressive antiretroviral therapy | Unpublished | 1e-165 | 16 16PR 16RT |
16 11PR 9RT |
100 | HIVDB |
| Kassu (2006) | MOLECULAR epidemiology of HIV type 1 in treatment-naive patients in north Ethiopia | AIDS Res. Hum. Retroviruses 23 (4), 564-568 (2007) | 1e-153 | 92 92PR 92RT |
92 71PR 92RT |
100 | HIVDB |
| Kato (2004) | COMPARISON of genotypic assay and peripheral blood mononuclear cell-based phenotypic assay in HIV-1 antiretroviral drug resistance | Unpublished | 1e-159 | |
112 56PR 56RT |
0 | ARV Rx and/or other data are N/A |
| Katzenstein (2007) | SEVENTEEN-YEAR-OLD mother-to-child HIV type 1 transmission identified by phylogeny and signature patterns | AIDS Res. Hum. Retroviruses 24 (8), 1117-1120 (2008) | 0 | |
3 3RT |
0 | Case report(s) / study subset |
| Kaufmann (2001) | IMPACT of HIV type 1 protease, reverse transcriptase, cleavage site, and p6 mutations on the virological response to quadruple therapy with saquinavir, ritonavir, and two nucleoside analogs | AIDS Res. Hum. Retroviruses 17 (6), 487-497 (2001) | 1e-130 | |
42 42PR 42RT |
0 | ARV Rx and/or other data are N/A |
| Kawashima (2009) | Adaptation of HIV-1 to human leukocyte antigen class I | Nature 458 (7238), 641-645 (2009) | 4e-26 | |
290 290IN |
0 | Gene fragment(s) |
| Kaye (2001) | OBSERVATIONS of HIV-1 genotypic drug resistance in a trial of four reverse transcriptase inhibitors (Quattro Trial) | Antivir. Ther. (Lond.) (2001) In press | 9e-94 | 58 58RT |
58 58RT |
100 | HIVDB |
| Kazennova (2011) | Direct Submission | Submitted (10-AUG-2010) T-Lymphotropic Viruses Lab | 0 | |
82 31PR 82RT |
0 | Unpublished |
| Kearney (2009) | Human immunodeficiency virus type 1 population genetics and adaptation in newly infected individuals | J. Virol. 83 (6), 2715-2727 (2009) | 1e-163 | |
1946 1843PR 576RT |
0 | Evolution/quasispecies study |
| Kebe (2011) | Distribution of HIV-1 subtypes and antiretroviral drug resistance mutations in Senegalese children experiencing virological failure under WHO recommended highly active antiretroviral therapy | Unpublished | 0 | |
49 7PR 48RT |
0 | Unpublished |
| Kebira (2011) | Genetic Diversity of HIV-1 in Patients on Antiretroviral Therapy in Nairobi | Unpublished | 2e-47 | |
40 40IN |
0 | Gene fragment(s) |
| Keele (2006) | CHIMPANZEE reservoirs of pandemic and nonpandemic HIV-1 | Science 313 (5786), 523-526 (2006) | 0 | 30 4PR 4RT 30IN |
30 4RT 30IN |
100 | HIVDB |
| Keele (2008) | CHARACTERIZATION of the follicular dendritic cell reservoir of human immunodeficiency virus type 1 | J. Virol. 82 (11), 5548-5561 (2008) | 1e-142 | |
431 332PR 428RT |
0 | Evolution/quasispecies study |
| Keele (2009) | Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz | Nature 460 (7254), 515-519 (2009) | 2e-86 | 14 14IN |
14 14IN |
100 | HIVDB |
| Keele (2010) | Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection | Proc. Natl. Acad. Sci. U.S.A. 105 (21), 7552-7557 | 0 | |
1 1PR 1RT 1IN |
0 | Evolution/quasispecies study |
| Kemal (2006) | MULTIDRUG-RESISTANT HIV-1 resulting from intrapatient viral recombination | Unpublished | 0 | |
96 93PR 96RT |
0 | Pending |
| Kemal (2007) | HIV-1 Drug Resistance in Variants from the Female Genital Tract and Plasma | J. Infect. Dis. 195 (4), 535-545 (2007) | 0 | |
309 301PR 309RT |
0 | Evolution/quasispecies study |
| Kemal (2007) | TRANSITION from Long-Term Nonprogression to HIV-1 Disease Associated with Escape from Cellular Immune Control | Unpublished | 0 | |
13 13PR 13RT 4IN |
0 | Evolution/quasispecies study |
| Kemal (2010) | Multidrug-resistant HIV-1 and Recombination between Variants from the Genital Tract and Plasma: A Longitudinal Analysis | Unpublished | 0 | |
70 70RT |
0 | Evolution/quasispecies study |
| Kestler (2000) | INDUCTION of AIDS in rhesus monkeys by molecularly cloned simian immunodeficiency virus | Unpublished | 5e-99 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Khamadi (2005) | GENOMIC Diversity of HIV-1 subtypes in Northern Kenya | Unpublished | 4e-52 | |
137 137IN |
0 | Gene fragment(s) |
| Khurana (2002) | SEQUENCE of HIV-1 isolate 01IN565.14 from India | Unpublished | 1e-165 | |
4 4PR 4RT 4IN |
0 | Unpublished |
| Kieffer (2004) | GENOTYPIC Analysis of HIV-1 Drug Resistance at the Limit of Detection: Virus Production without Evolution in Treated Adults with Undetectable HIV Loads | J. Infect. Dis. 189 (8), 1452-1465 (2004) | 1e-124 | |
342 174PR 168RT |
0 | Evolution/quasispecies study |
| Kiepiela (2005) | DOMINANT influence of HLA-B in mediating the potential co-evolution of HIV and HLA | Nature 432 (7018), 769-775 (2004) | 0 | |
220 166PR 197RT 191IN |
0 | Sequence quality |
| Kijak (2001) | RESISTANCE profiles to antiretroviral drugs in HIV-1 Drug-Naive Patients in Argentina | Antivir. Ther. (Lond.) (2001) In press | 1e-161 | 115 58PR 57RT |
115 58PR 57RT |
100 | HIVDB |
| Kijak (2001) | HIV type 1 genetic diversity is a major obstacle for antiretroviral drug resistance hybridization-based assays | AIDS Res. Hum. Retroviruses 17 (15), 1415-1421 (2001) | 2e-97 | |
93 93RT |
0 | ARV Rx and/or other data are N/A |
| Kijak (2002) | ORIGIN of human immunodeficiency virus type 1 quasispecies emerging after antiretroviral treatment interruption in patients with therapeutic failure | J. Virol. 76 (14), 7000-7009 (2002) | 1e-109 | |
122 122PR 122RT |
0 | Evolution/quasispecies study |
| Kijak (2003) | DEVELOPMENT and application of a high-throughput HIV type 1 genotyping assay to identify CRF02_AG in West/West Central Africa | AIDS Res. Hum. Retroviruses 20 (5), 521-530 (2004) | 0 | 51 51PR 51RT 51IN |
51 11PR 51RT 51IN |
100 | HIVDB |
| Kijak (2007) | DISTINGUISHING molecular forms of HIV-1 in Asia with a high-throughput, fluorescent genotyping assay, MHAbce v.2 | Virology 358 (1), 178-191 (2007) | 0 | |
12 12PR 12RT 12IN |
0 | Case report(s) / study subset |
| Kijak (2007) | VARIABLE contexts and levels of hypermutation in HIV-1 proviral genomes recovered from primary peripheral blood mononuclear cells | Virology 376 (1), 101-111 (2008) | 0 | |
8 7RT 8IN |
0 | Case report(s) / study subset |
| Kim (2009) | Human APOBEC3G drives HIV-1 evolution and the development of drug resistance | Unpublished | 1e-149 | |
250 250RT |
0 | Evolution/quasispecies study |
| Kim (2010) | Genetic Variation of the HIV-1 Integrase Region in Newly Diagnosed Antiretroviral Drug-Naive Patients with HIV/AIDS in Korea | Unpublished | 1e-168 | |
75 75IN |
0 | Unpublished |
| Kim (2009) | Comparison of Genotypic Resistance Mutations in Treatment Naive HIV-1 Infected Patients in Korea and China | Unpublished | 0 | 64 64PR 64RT |
64 46PR 54RT |
100 | HIVDB |
| Kimata (1998) | A lymph node-derived cytopathic simian immunodeficiency virus Mne variant replicates in nonstimulated peripheral blood mononuclear cells | J. Virol. 72 (1), 245-256 (1998) | 0.068 | |
1 1PR 1RT |
0 | Laboratory/experimental isolate |
| King (1998) | RESISTANCE to the anti-human immunodeficiency virus type 1 compound L-chicoric acid results from a single mutation at amino acid 140 of integrase | J. Virol. 72 (10), 8420-8424 (1998) | 1e-164 | |
1 1IN |
0 | Case report(s) / study subset |
| Kinomoto (2004) | HIV-1 proteases from drug-naive West African patients are differentially less susceptible to protease inhibitors | Clin. Infect. Dis. 41 (2), 243-251 (2005) | 3e-50 | 38 38PR |
39 39PR |
97 | HIVDB |
| Kiptoo (2008) | PREVALENCE of Nevirapine-Associated Resistance Mutations after Single Dose Prophylactic Treatment among Antenatal Clinic Attendees in North Rift Kenya | AIDS Res. Hum. Retroviruses 24 (12), 1555-1559 (2008) | 1e-151 | |
1 1RT |
0 | Case report(s) / study subset |
| Kirchhoff (1989) | A novel proviral clone of HIV-2: biological and phylogenetic relationship to other primate immunodeficiency viruses | Virology 177 (1), 305-311 (1990) | 4e-97 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Kirmaier (2010) | TRIM5 and interspecies transmission of primate immunodeficiency viruses | PLoS Biol. 2010 Aug 24;8(8). pii: e1000462. | 0 | |
1 1RT 1IN |
0 | Pending |
| Kita (2005) | GENETIC diversity of HIV type 1 in Likasi, southeast of the Democratic Republic of Congo | AIDS Res. Hum. Retroviruses 20 (12), 1352-1357 (2004) | 2e-49 | |
27 27IN |
0 | Gene fragment(s) |
| Kitrinos (2009) | Virologic failure in therapy-naive subjects on aplaviroc plus lopinavir-ritonavir: detection of aplaviroc resistance requires clonal analysis of envelope | Antimicrob. Agents Chemother. 53 (3), 1124-1131 (2 | 1e-172 | |
18 5PR 17RT |
0 | Pending |
| Knops (2010) | The evolution of protease mutation 76V is associated with protease mutation 46I and gag mutation 431V | AIDS 24 (5), 779-781 (2010) | 0 | 26 26PR 26RT |
26 1PR 26RT |
100 | HIVDB |
| Knops (2010) | Evolution of protease inhibitor resistance in the gag and pol genes of HIV subtype G isolates | J. Antimicrob. Chemother. 65 (7), 1472-1476 (2010) | 0 | 21 21PR 21RT |
21 21RT |
100 | HIVDB |
| Koch (2001) | GENETIC analysis of hiv type 1 strains in bujumbura (burundi): predominance of subtype c variant | AIDS Res. Hum. Retroviruses 17 (3), 269-273 (2001) | 2e-89 | 36 18PR 18RT |
36 18PR 18RT |
100 | HIVDB |
| Koelsch (2003) | CLADE B HIV-1 superinfection with wild-type virus after primary infection with drug-resistant clade B virus | AIDS 17 (7), F11-F16 (2003) | 1e-117 | |
9 9PR 9RT |
0 | Evolution/quasispecies study |
| Koizumi (2006) | EMERGENCE of ART resistance associated primary mutations among drug naive HIV-1 individuals in rural western Cameroon | Unpublished | 1e-125 | 27 20PR 7RT |
75 20PR 7RT 48IN |
36 | HIVDB |
| Komiyama (1989) | NUCLEOTIDE sequences of gag and env genes of a Japanese isolate of HIV-1 and their expression in bacteria | AIDS Res. Hum. Retroviruses 5 (4), 411-419 (1989) | 2e-40 | |
1 1PR |
0 | Laboratory/experimental isolate |
| Konings (2003) | PROTEASE mutations in HIV-1 non-B strains infecting drug-naive villagers in Cameroon | AIDS Res. Hum. Retroviruses 20 (1), 105-109 (2004) | 1e-51 | 128 128PR |
128 128PR |
100 | HIVDB |
| Konings (2003) | POL gene of drug-naive Cameroonian individual | Unpublished | 0 | 13 1PR 12RT |
13 1PR 12RT |
100 | HIVDB |
| Konings (2006) | HIV-1 Genetic Diversity in the East Province of Cameroon | Unpublished | 7e-50 | |
4 4PR |
0 | Pending |
| Konings (2006) | HUMAN immunodeficiency virus type 1 (HIV-1) circulating recombinant form 02_AG (CRF02_AG) has a higher in vitro replicative capacity than its parental subtypes A and G | J. Med. Virol. 78 (5), 523-534 (2006) | 0 | |
5 5RT |
0 | Case report(s) / study subset |
| Korovina (2011) | Direct Submission | Submitted (18-JAN-2011) Pediatric HIV/AIDS Clinica | 0 | |
8 8RT |
0 | Unpublished |
| Koulinska (2001) | A new human immunodeficiency virus type 1 circulating recombinant form from Tanzania | AIDS Res. Hum. Retroviruses 17 (5), 423-431 (2001) | 1e-164 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Koulinska (2002) | COMMON genetic arrangements among human immunodeficiency virus type 1 subtype A and D recombinant genomes vertically transmitted in Tanzania | AIDS Res. Hum. Retroviruses 18 (13), 947-956 (2002) | 1e-165 | 6 5PR 4RT 6IN |
7 6PR 7RT 6IN |
85 | HIVDB |
| Koulinska (2003) | HYPERMUTATION of HIV type 1 genomes isolated from infants soon after vertical infection | AIDS Res. Hum. Retroviruses 19 (12), 1115-1123 (2003) | 0 | |
45 3PR 45RT 3IN |
0 | Case report(s) / study subset |
| Kousiappa (2008) | GENETIC analysis of HIV type 1 strains from newly infected untreated patients in cyprus: high genetic diversity and low prevalence of drug resistance | AIDS Res. Hum. Retroviruses 25 (1), 23-35 (2009) | 0 | 37 37PR 37RT |
37 5PR 37RT |
100 | HIVDB |
| Kousiappa (2009) | Near Full-Length Genetic Analysis of HIV Sequences Derived from Cyprus: Evidence of a Highly Polyphyletic and Evolving Infection | AIDS Res Hum Retroviruses. 2009 Aug;25(8):727-40. | 0 | 77 77PR 77RT 77IN |
77 26PR 77RT 77IN |
100 | HIVDB |
| Kousiappa (2011) | Molecular Characterization of HIV-1 Strains from Newly Diagnosed Patients in Cyprus (2007 - 2009) Recovers Multiple Clades Including Unique Recombinant Strains and Lack of Transmitted Drug Resistance | AIDS Res. Hum. Retroviruses (2011) In press | 0 | |
74 40PR 74RT 74IN |
0 | Pending |
| Kouyos (2010) | Molecular epidemiology reveals long-term changes in HIV-1 subtype B transmission in Switzerland | J Infect Dis. 2010 May 15;201(10):1488-97. | 0 | |
549 428PR 305RT |
0 | Pending |
| Koyalta (2009) | High Frequency of Antiretroviral Drug Resistance among HIV-Infected Adults Receiving First-Line Highly Active Antiretroviral Therapy in N Djamena, Chad | Clin. Infect. Dis. DOI: 10.1086/599611 (2009) In p | 1e-50 | 5 5PR 5RT |
5 5PR |
100 | HIVDB |
| Koyanagi (1996) | DUAL infection of the central nervous system by AIDS viruses with distinct cellular tropisms | Science 236 (4803), 819-822 (1987) | 1e-163 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Kraiselburd (2002) | PROPERTIES of virus-like particles produced by SIV-chronically infected human cell clones | Cell. Mol. Biol. (Noisy-le-grand) 41 Suppl 1, S41-S52 (1995) | 2e-09 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Kraus (1995) | CHARACTERIZATION of a Novel Molecular Clone of HIV-2 Infectious for Macaca nemestrina | Unpublished | 1e-100 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Kreutz (1996) | ANALYSIS of the envelope region of the highly divergent HIV-2ALT isolate extends the known range of variability within the primate immunodeficiency viruses | AIDS Res. Hum. Retroviruses 8 (9), 1619-1629 (1992) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Kristiansen (2005) | GENETIC evolution of HIV in patients remaining on a stable HAART regimen despite insufficient viral suppression | Unpublished | 0 | |
47 46PR 47RT |
0 | ARV Rx and/or other data are N/A |
| Krogstad (2002) | MOTHER-TO-CHILD transmission in the United States of subtypes D and A/G human immunodeficiency virus type 1 | AIDS Res. Hum. Retroviruses 18 (6), 413-417 (2002) | 5e-96 | |
2 2PR 2RT |
0 | Case report(s) / study subset |
| Kuehnel (2000) | MOLECULAR cloning of two west African human immunodeficiency virus type 2 isolates that replicate well in macrophages: a Gambian isolate, from a patient with neurologic acquired immunodeficiency syndrome, and a highly divergent Ghanian isolate | Unpublished | 4.2 | 1 1PR 1RT 1IN |
1 1RT |
100 | HIVDB |
| Kuhn (1999) | HIV-1 vif gene sequences found in Cologne, Germany in patients who had traveled to or originated from foreign countries | Unpublished | 0.02 | |
2 2IN |
0 | Gene fragment(s) |
| Kuhnel (1995) | NUCLEOTIDE sequence of HIV-2D194, an isolate from a Gambian case of 'neuro-AIDS', which showed excellent growth in macrophages | Nucleic Acids Res. 18 (20), 6142 (1990) | 4e-98 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Kuritzkes (2000) | EFFECT of zidovudine resistance mutations on virologic response to treatment with zidovudine-lamivudine-ritonavir: genotypic analysis of human immunodeficiency virus type 1 isolates from AIDS clinical trials group protocol 315.ACTG Protocol 315 Team | J. Infect. Dis. 181 (2), 491-497 (2000) | 1e-133 | |
40 40PR 40RT |
0 | Sequence quality |
| Kuritzkes (2000) | EMERGENCE of dual resistance to zidovudine and lamivudine in HIV-1-infected patients treated with zidovudine plus lamivudine as initial therapy | J. Acquir. Immune Defic. Syndr. 23 (1), 26-34 (2000) | 9e-94 | |
6 6RT |
0 | Pending |
| Kuritzkes (2004) | RATE of thymidine analogue resistance mutation accumulation with zidovudine- or stavudine-based regimens | J. Acquir. Immune Defic. Syndr. 36 (1), 600-603 (2004) | 1e-123 | 405 403PR 405RT |
405 403PR 405RT |
100 | HIVDB |
| Kurle (2007) | EMERGENCE of NNRTI Drug Resistance Mutations after Single-Dose Nevirapine Exposure in HIV Type 1 Subtype C-Infected Infants in India | AIDS Res. Hum. Retroviruses 23 (5), 682-685 (2007) | 0 | 32 32RT |
32 32RT |
100 | HIVDB |
| Kusagawa (2001) | ISOLATION and characterization of a full-length molecular DNA clone of Ghanaian HIV type 1 intersubtype A/G recombinant CRF02_AG, which is replication competent in a restricted host range | AIDS Res. Hum. Retroviruses 17 (7), 649-655 (2001) | 4e-68 | 1 1PR 1RT 1IN |
1 1PR 1RT |
100 | Laboratory/experimental isolate |
| Kusagawa (2002) | ISOLATION and characterization of replication-competent molecular DNA clones of HIV type 1 CRF01_AE with different coreceptor usages | AIDS Res. Hum. Retroviruses 18 (2), 115-122 (2002) | 7e-86 | |
2 2PR 2RT |
0 | Case report(s) / study subset |
| Kusagawa (2003) | IDENTIFICATION of HIN type 2 subtype B transmission in East Africa | AIDS Res. Hum. Retroviruses 19 (11), 1045-1049 (2003) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Kuwata (2005) | INFECTIOUS Molecular Clones from a Simian Immunodeficiency Virus-Infected Rapid-Progressor (RP) Macaque: Evidence of Differential Selection of RP-Specific Envelope Mutations In Vitro and In Vivo | J. Virol. 80 (3), 1463-1475 (2006) | 0 | |
3 3RT 3IN |
0 | Laboratory/experimental isolate |
| La Seta Catamancio (2001) | IN vitro evolution of the human immunodeficiency virus type 1 gag-protease region and maintenance of reverse transcriptase resistance following prolonged drug exposure | J. Clin. Microbiol. 39 (3), 1124-1129 (2001) | 1e-116 | |
32 16PR 16RT |
0 | Evolution/quasispecies study |
| Laeyendecker (2005) | MOLECULAR Epidemiology of HIV-1 Subtypes in Southern China | J. Acquir. Immune Defic. Syndr. 38 (3), 356-362 (2005) | 5e-51 | 68 68PR |
68 68PR |
100 | HIVDB |
| Lahuerta (2007) | RAPID Spread and Genetic Diversification of HIV Type 1 Subtype C in a Rural Area of Southern Mozambique | AIDS Res. Hum. Retroviruses 24 (2), 327-335 (2008) | 1e-50 | 18 18PR |
18 18PR |
100 | HIVDB |
| Lakhashe (2008) | CHARACTERIZATION of B/C Recombinants of Near Full-Length HIV Type 1 from Northeastern India with Mosaics Identical to ARE195FL But with a Different Ancestral Origin | AIDS Res. Hum. Retroviruses 24 (1), 92-99 (2008) | 0 | 15 15PR 15RT 15IN |
15 2PR 15RT 15IN |
100 | Case report(s) / study subset |
| Lakhashe (2008) | EVIDENCE of a Novel B/C Recombinant Exhibiting Unique Breakpoints of Near Full-Length HIV Type 1 Genome from Northeastern India | AIDS Res. Hum. Retroviruses 24 (2), 229-234 (2008) | 0 | |
2 1PR 2RT 2IN |
0 | Case report(s) / study subset |
| Lakshmi (2009) | Antiretroviral Drug Resistant Mutations at Baseline and at time of failure of antiretroviral therapy in HIV-1 co-infected TB patients | AIDS Res. Hum. Retroviruses (2009) In press | 9e-53 | 4 4PR |
4 4PR |
100 | HIVDB |
| Lall (2008) | PROFILE of Primary Resistance in HIV-1-Infected Treatment-Naive Individuals from Western India | AIDS Res. Hum. Retroviruses 24 (7), 987-990 (2008) | 0 | 40 40PR 40RT |
40 3PR 40RT |
100 | HIVDB |
| Lan (2003) | HIV Type 1 Isolates from 200 Untreated Individuals in Ho Chi Minh City (Vietnam): ANRS 1257 Study. Large Predominance of CRF01_AE and Presence of Major Resistance Mutations to Antiretroviral Drugs | AIDS Res. Hum. Retroviruses 19 (10), 925-928 (2003) | 1e-145 | 347 172PR 175RT |
347 172PR 175RT |
100 | HIVDB |
| Land (2007) | FULL-LENGTH HIV type 1 proviral sequencing of 10 highly exposed women from Nairobi, Kenya reveals a high proportion of intersubtype recombinants | AIDS Res. Hum. Retroviruses 24 (6), 865-872 (2008) | 0 | 13 13PR 13RT 13IN |
13 6PR 13RT 13IN |
100 | HIVDB |
| Land (2008) | HUMAN Immunodeficiency Virus (HIV) Type 1 Proviral Hypermutation Correlates with CD4 Count in HIV-Infected Women from Kenya | J. Virol. 82 (16), 8172-8182 (2008) | 0.032 | |
1 1IN |
0 | Case report(s) / study subset |
| Lapovok (2010) | Direct Submission | Submitted (03-JUN-2010) T-lymphotropic Viruses Lab | 1e-167 | |
36 36IN |
0 | Pending |
| Lataillade (2007) | NATURAL Polymorphism of the HIV-1 Integrase Gene and Mutations Associated with Integrase Inhibitor Resistance | Antivir. Ther. (Lond.) 12, 563-570 (2007) | 1e-168 | 66 66IN |
66 66IN |
100 | HIVDB |
| Lau (2007) | NEAR Full-Length Sequence Analysis of a Unique CRF01_AE/B Recombinant from Kuala Lumpur, Malaysia | AIDS Res. Hum. Retroviruses 23 (9), 1139-1145 (2007) | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Lau (2007) | NEAR-FULL Length Sequence Analysis of Unique Recombinant Form of HIV-1 from Malaysia: Evidence of Rapid and Continuous HIV-1 Evolution in the Region | Unpublished | 0 | |
3 3PR 3RT 3IN |
0 | Case report(s) / study subset |
| Laukkanen (1999) | VIRTUALLY full-length sequences of HIV type 1 subtype J reference strains | AIDS Res. Hum. Retroviruses 15 (3), 293-297 (1999) | 1e-164 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Laukkanen (1999) | DIRECT Submission | Submitted (18-NOV-1998) Department of Infectious Disease Epi | 1e-164 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| Laukkanen (2000) | VIRTUALLY full-length subtype F and F/D recombinant HIV-1 from Africa and South America | Virology 269 (1), 95-104 (2000) | 1e-167 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Laurent (2006) | ANTIRETROVIRAL drug resistance and routine therapy, Cameroon | Emerging Infect. Dis. 12 (6), 1001-1004 (2006) | 0 | 21 21PR 21RT |
21 13PR 21RT |
100 | HIVDB |
| Lazaro (2011) | Molecular characterization of HIV-1 CRF01_AE in Mekong delta, Vietnam, and impact of T-cell epitope mutations on HLA recognition (ANRS 12159) | Unpublished | 1e-145 | |
35 34PR 1RT |
0 | Unpublished |
| Lee (2009) | Onward Transmission and Primary Drug Resistance of HIV-1 in Drug-naive Seroconverters in Singapore | Unpublished | 0 | 60 60PR 60RT |
60 24PR 60RT |
100 | HIVDB |
| Lee (2005) | BREAST-MILK Shedding of Drug-Resistant HIV-1 Subtype C in Women Exposed to Single-Dose Nevirapine | J. Infect. Dis. 192 (7), 1260-1264 (2005) | 1e-120 | |
35 35RT |
0 | Pending |
| Leelamanit (2005) | IN vivo sequence variability of viral protease of HIV-1 subtype E from therapy-naive Thai patients | Unpublished | 1e-50 | |
64 64PR |
0 | Unpublished |
| Leelamanit (2005) | IN vivo variability of viral protease from HIV-1 subtype E infected Thai patients treated with reverse transcriptase inhibitors | Unpublished | 5e-51 | |
60 60PR |
0 | Pending |
| Leendertz (2010) | High prevalence, coinfection rate, and genetic diversity of retroviruses in wild red colobus monkeys (Piliocolobus badius badius) in Tai National Park, Cote d'Ivoire | J. Virol. 84 (15), 7427-7436 (2010) | 3e-39 | |
21 21IN |
0 | Gene fragment(s) |
| Leigh Brown (2000) | REDUCED susceptibility of human immunodeficiency virus type 1 (HIV-1) from patients with primary HIV infection to nonnucleoside reverse transcriptase inhibitors is associated with variation at novel amino acid sites | J. Virol. 74 (22), 10269-10273 (2000) | 1e-98 | 110 110RT |
110 110RT |
100 | HIVDB |
| Leigh Brown (2005) | GENETIC basis of hypersusceptibility to protease inhibitors and low replicative capacity of human immunodeficiency virus type 1 strains in primary infection | J. Virol. 78 (5), 2242-2246 (2004) | 5e-53 | |
174 174PR |
0 | Pending |
| Leitner (1995) | BIOLOGICAL and molecular characterization of subtype D, G, and A/D recombinant HIV-1 transmissions in Sweden | Virology 209 (1), 136-146 (1995) | 1e-68 | |
3 3RT |
0 | Case report(s) / study subset |
| Lemey (2002) | MAXIMUM Likelihood Analysis of Clock-Like Behavior in HIV: Implications on Dating Strategies in HIV Molecular Phylogenies | Unpublished | 1e-130 | |
6 6PR 6RT |
0 | Case report(s) / study subset |
| Lemey (2005) | MOLECULAR footprint of drug-selective pressure in a human immunodeficiency virus transmission chain | J. Virol. 79 (18), 11981-11989 (2005) | 1e-146 | |
27 24PR 26RT |
0 | Case report(s) / study subset |
| Leoz (2008) | INTEGRASE VIH-1 group O | Unpublished | 1e-100 | |
96 96IN |
0 | Pending |
| Lerma (2000) | QUANTITATION of human immunodeficiency virus type 1 group O load in plasma by measuring reverse transcriptase activity | J. Clin. Microbiol. 38 (1), 402-405 (2000) | 7e-08 | |
2 2RT |
0 | Case report(s) / study subset |
| Lewis (2008) | EPISODIC sexual transmission of HIV revealed by molecular phylodynamics | PLoS Med. 5 (3), E50 (2008) | 0 | |
100 93PR 100RT |
0 | Pending |
| Li (2006) | RAPID Reversion of Sequence Polymorphisms Dominates Early Human Immunodeficiency Virus Type 1 Evolution | J. Virol. 81 (1), 193-201 (2007) | 0 | 18 18PR 18RT 18IN |
18 13PR 18RT 18IN |
100 | HIVDB |
| Li (2010) | Reduced replication capacity of NL4-3 chimeric viruses encoding RT-Integrase sequences from HIV-1 elite controllers | Unpublished | 0 | |
74 74RT 74IN |
0 | Unpublished |
| Li (2010) | Polymorphisms for HIV-1 B pol and its potential influence on drug resistance in China | Unpublished | 0 | |
695 497PR 436RT |
0 | Unpublished |
| Li (2011) | Factors associated with viral rebound in HIV-positive subjects receiving a therapeutic HIV-1 gag vaccine | Unpublished | 0 | |
204 204RT |
0 | Evolution/quasispecies study |
| Li (2005) | THE sequence characterization and variation analysis of Human immunodeficiency virus type-1 vif gene in China | Unpublished | 0.02 | |
23 23IN |
0 | Gene fragment(s) |
| Li (2010) | Near full-length genomic characterization of a novel HIV type 1 subtype B/C recombinant strain from Yunnan, China | AIDS Res. Hum. Retroviruses 26 (6), 711-716 (2010) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Li (2010) | Near Full-Length Sequence Analysis of a Novel HIV-1 C/CRF01_AE Recombinant Variant from Yunnan, China | AIDS Res. Hum. Retroviruses (2010) In press | 0 | |
1 1RT 1IN |
0 | Pending |
| Li (2009) | Genetic characterization of 13 subtype CRF01_AE near full-length genomes in Guangxi, China | AIDS Res. Hum. Retroviruses 26 (6), 699-704 (2010) | 0 | 13 13PR 13RT 13IN |
13 3PR 13RT 13IN |
100 | HIVDB |
| Li (2011) | High genetic diversity and low drug-resistance of HIV-1 was found in men who have sex with men in Shijiazhuang, China | Unpublished | 0 | |
15 11PR 15RT 15IN |
0 | Unpublished |
| Li (2007) | DUAL infections with multiple lineages of HIV-1 strains in unique geographical recombination 'hotspots' in Asia | Unpublished | 1e-168 | |
76 37PR 39RT |
0 | Unpublished |
| Li (2005) | MOLECULAR epidemiology of the heterosexual HIV-1 transmission in Kunming, Yunnan Province of China suggests origin from the local IDU epidemic | AIDS Res. Hum. Retroviruses 21 (11), 977-980 (2005) | 1e-174 | |
52 48PR 51RT |
0 | Pending |
| LI (1989) | UNPUBLISHED (1989) | 5e-83 | |
1 1RT 1IN |
0 | ARV Rx and/or other data are N/A | |
| Li (1991) | MOLECULAR characterization of human immunodeficiency virus type 1 cloned directly from uncultured human brain tissue: identification of replication-competent and -defective viral genomes | J. Virol. 65 (8), 3973-3985 (1991) | 1e-128 | 1 1PR 1RT 1IN |
2 2PR 2RT |
50 | HIVDB |
| Li (1989) | EXTENSIVE genetic variability of simian immunodeficiency virus from African green monkeys | J. Virol. 63 (4), 1800-1802 (1989) | 9e-30 | |
1 1RT |
0 | Gene fragment(s) |
| Li (2011) | High prevalence of HIV-1 subtype B' among heterosexuals in western Hubei, Central China: Bridging the epidemic into general population | AIDS Res. Hum. Retroviruses (2010) In press | 0 | |
59 38PR 33RT |
0 | Pending |
| Li (2011) | Identification of a novel second-generation circulating recombinant form (CRF48_01B) in Malaysia: a descendant of the previously identified CRF33_01B | J. Acquir. Immune Defic. Syndr. 54 (2), 129-136 (2 | 0 | 17 17PR 17RT 3IN |
23 23PR 23RT 3IN |
73 | HIVDB |
| Liang (2009) | Characterization of Genetic Diversity and Insight into the Functions and Evolution of the HIV-1 Gag gene: A Comparison of Parallel Pyrosequencing and Sanger Dideoxy Clone-based Sequencing | Unpublished | 2e-49 | |
44 44PR |
0 | Evolution/quasispecies study |
| Liao (2009) | Phylodynamic analysis of the dissemination of HIV-1 CRF01_AE in Vietnam | Virology 391 (1), 51-56 (2009) | 0 | 33 33PR 33RT 33IN |
33 19PR 33RT 33IN |
100 | HIVDB |
| Liao (2007) | GENOTYPIC Analysis of the Protease and Reverse Transcriptase of HIV Type 1 Isolates from Recently Infected Injecting Drug Users in Western China | AIDS Res. Hum. Retroviruses 23 (8), 1062-1065 (2007) | 1e-148 | 49 24PR 25RT |
49 24PR 25RT |
100 | HIVDB |
| Lidstrom (2011) | Initiation of antiretroviral treatment in women after delivery can induce multi-class drug resistance in breastfeeding HIV-infected infants | Unpublished | 0 | |
186 40PR 186RT |
0 | Unpublished |
| Liegeois (2006) | MOLECULAR characterization of a novel simian immunodeficiency virus lineage (SIVtal) from northern talapoins (Miopithecus ogouensis) | Virology 349 (1), 55-65 (2006) | 0 | 6 2PR 2RT 6IN |
6 3RT 6IN |
100 | HIVDB |
| Liegeois (2008) | Full-length genome characterization of a novel simian immunodeficiency virus lineage (SIVolc) from olive Colobus (Procolobus verus) and new SIVwrcPbb strains from Western Red Colobus (Piliocolobus badius badius) from the Tai Forest in Ivory Coast | J. Virol. 83 (1), 428-439 (2009) | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Liegeois (2011) | Full-length genome sequence of a simian immunodeficiency virus (SIVsunK08) from a wild captured sun-tailed monkey (Cercopithecus solatus) in Gabon provides evidence for a species specific monophyletic SIVsun lineage | AIDS Res. Hum. Retroviruses (2011) In press | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Liegeois (2011) | Evidence of circulating monophyletic Simian Immunodeficiency Virus strain in sun-tailed monkeys (Cercopithecus solatus) | Unpublished | 8e-65 | |
2 2IN |
0 | Pending |
| Lihana (2006) | HIV Type 1 Subtypes among STI Patients in Nairobi: A Genotypic Study Based on Partial pol Gene Sequencing | AIDS Res. Hum. Retroviruses 22 (11), 1172-1177 (2006) | 1e-50 | |
140 140IN |
0 | Gene fragment(s) |
| Lihana (2004) | HIV Recombinants and Subtypes Among Patients Attending a Sexually Transmitted Disease Clinic in Nairobi, Kenya | Unpublished | 2e-49 | |
79 79IN |
0 | Pending |
| Liitsola (2000) | AN AB recombinant and its parental HIV type 1 strains in the area of the former Soviet Union: low requirements for sequence identity in recombination. UNAIDS Virus Isolation Network | AIDS Res. Hum. Retroviruses 16 (11), 1047-1053 (2000) | 1e-163 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Lillemark (2011) | Characterization of HIV-1 from patients with virological failure to a boosted protease inhibitor regimen | J. Med. Virol. 83 (3), 377-383 (2011) | 1e-159 | |
1 1RT |
0 | Pending |
| Lin (2011) | Biological characterization and drug susceptibilities of CRF07_BC strains from treatment-naive patients in Taiwan | Unpublished | 1e-172 | |
6 5PR 6RT |
0 | Unpublished |
| Lin (2007) | MOLECULAR Epidemiology of HIV-1 Infection and Full-Length Genomic Analysis of Circulating Recombinant Form 07_BC Strains from Injection Drug Users in Taiwan | J. Infect. Dis. 195 (9), 1283-1293 (2007) | 0 | 58 58PR 4RT 4IN |
58 57PR 4RT 4IN |
100 | HIVDB |
| Ling (2003) | NON-INVASIVE Detection of New Simian Immunodeficiency Virus Lineages in Captive Sooty Mangabeys: Ability to Amplify Virion RNA from Fecal Samples Correlates with Plasma Viral Load | J. Virol. (2003) In press | 5e-30 | |
10 10IN |
0 | Pending |
| Linka (2004) | Direct Submission | Submitted (24-SEP-2009) National Reference Laborat | 0 | |
1084 711PR 1084RT |
0 | Unpublished |
| Little (2008) | PERSISTENCE of Transmitted Drug Resistance among Subjects with Primary Human Immunodeficiency Virus Infection | J. Virol. 82 (11), 5510-5518 (2008) | 0 | |
142 83PR 142RT |
0 | Case report(s) / study subset |
| Little (2008) | ANTIRETROVIRAL-DRUG resistance among patients recently infected with HIV | N. Engl. J. Med. 347 (6), 385-394 (2002) | 0 | 316 316PR 316RT |
316 267PR 310RT |
100 | HIVDB |
| Liu (1997) | HIV-1 reverse transcriptase encoding region of brain derived viral RNA. | Unpublished | 9e-94 | |
10 10RT |
0 | Case report(s) / study subset |
| Liu (2010) | Drug resistance and HCV co-infection in former blood donors infected with HIV-1 in China | AIDS Res. Hum. Retroviruses (2010) In press | 3e-51 | |
60 60PR |
0 | Pending |
| Liu (2007) | POLYMORPHISMS and drug resistance analysis of HIV-1 CRF01_AE strains circulating in Fujian Province, China | Arch. Virol. 152 (10), 1799-1805 (2007) | 1e-50 | 44 44PR 44RT |
44 44PR |
100 | HIVDB |
| Liu (2007) | POLYMORPHISM and antiretroviral drug resistance patterns in the protease gene of HIV-1 subtypes infecting PI naive Chinese patients | Unpublished | 1e-51 | 70 70PR |
72 72PR |
97 | HIVDB |
| Liu (2005) | GENETIC Characterization of Full-length Human Immunodeficiency Virus Type 1 Genomes from Three Infected Paid Blood Donors in China | Unpublished | 0 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Liu (2008) | MOLECULAR epidemiology of human immunodeficiency virus type 1 and hepatitis C virus in former blood donors in central china | AIDS Res. Hum. Retroviruses 24 (1), 1-6 (2008) | 0 | |
55 50PR 55RT 2IN |
0 | Pending |
| Liu (2010) | Identification and characterization of two new HIV type 1 unique (B/C) recombinant forms in China | Unpublished | 0 | |
2 2RT 2IN |
0 | Pending |
| Liu (2006) | SELECTION on the human immunodeficiency virus type 1 proteome following primary infection | J. Virol. 80 (19), 9519-9529 (2006) | 0 | |
40 40PR 40RT 40IN |
0 | Evolution/quasispecies study |
| Liu (2009) | Preinfection human immunodeficiency virus (HIV)-specific cytotoxic T lymphocytes failed to prevent HIV type 1 infection from strains genetically unrelated to viruses in long-term exposed partners | J. Virol. 83 (20), 10821-10829 (2009) | 0 | |
65 2PR 34RT 31IN |
0 | Case report(s) / study subset |
| Lloyd (2007) | PREVALENCE of Resistance Mutations in HIV-1-Infected Hondurans at the Beginning of the National Antiretroviral Therapy Program | AIDS Res. Hum. Retroviruses 24 (4), 529-535 (2008) | 0 | 336 336PR 336RT |
336 303PR 336RT |
100 | HIVDB |
| Loemba (2002) | GENETIC divergence of human immunodeficiency virus type 1 Ethiopian clade C reverse transcriptase (RT) and rapid development of resistance against nonnucleoside inhibitors of RT | Antimicrob. Agents Chemother. 46 (7), 2087-2094 (2002) | 7e-86 | 14 14PR |
28 14PR 14RT |
50 | Gene fragment(s) |
| Loffredo (2008) | PATTERNS of CD8+ immunodominance may influence the ability of Mamu-B*08-positive macaques to naturally control simian immunodeficiency virus SIVmac239 replication | J. Virol. 82 (4), 1723-1738 (2008) | 0 | |
4 4RT 4IN |
0 | Case report(s) / study subset |
| Lole (1999) | FULL-LENGTH human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination | J. Virol. 73 (1), 152-160 (1999) | 1e-165 | 6 6PR 6RT 6IN |
6 6PR 6RT 6IN |
100 | HIVDB |
| Longo (2008) | HIV-1 diversity among inmates of Italian prisons | J. Med. Virol. 80 (10), 1689-1694 (2008) | 0 | |
3 3RT |
0 | Case report(s) / study subset |
| Lopez-Galindez (2010) | Initial fitness recovery of HIV-1 is driven by quasispecies heterogeneity and can occur without mutations in the consensus sequence | PLoS One. 2010 Apr 26;5(4):e10319. | 0 | |
22 22PR 22RT 22IN |
0 | Pending |
| Lorenzo-Redondo (2011) | Dynamics of in vitro fitness recovery of HIV-1 | J. Virol. 85 (4), 1861-1870 (2011) | 0 | |
12 12PR 12RT 12IN |
0 | Evolution/quasispecies study |
| Low (2009) | Natural Genotypic Polymorphisms of the HIV-1 Integrase Gene and Associated Drug Susceptibilities to a Panel of Diverse Integrase Strand Transfer Inhibitors | Antimicrob Agents Chemother. 2009 | 1e-168 | 133 133IN |
133 133IN |
100 | HIVDB |
| Loxton (2004) | SEQUENCE Analysis of Near Full-Length HIV Type 1 Subtype D Primary Strains Isolated in Cape Town, South Africa, from 1984 to 1986 | AIDS Res. Hum. Retroviruses 21 (5), 410-413 (2005) | 0 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Luk (2008) | NEAR Full-Length Genome Characterization of an HIV Type 1 CRF25_cpx Strain from Cameroon | AIDS Res. Hum. Retroviruses 24 (10), 1309-1314 (2008) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | Case report(s) / study subset |
| Luk (2001) | NATURALLY Occurring Sequence Polymorphisms within HIV Type 1 Group O Protease | AIDS Res. Hum. Retroviruses 17 (16), 1555-1561 (2001) | 5e-10 | 28 28PR |
28 28PR |
100 | HIVDB |
| Luk (2007) | NEAR Full-Length Genome Characterization of Three Additional HIV Type 1 CRF13_cpx Strains from Cameroon | AIDS Res. Hum. Retroviruses 23 (2), 297-302 (2007) | 0 | 3 3PR 3RT 3IN |
3 3RT 3IN |
100 | HIVDB |
| Lukashov (2001) | SELECTION by AZT and rapid replacement in the absence of drugs of HIV type 1 resistant to multiple nucleoside analogs | AIDS Res. Hum. Retroviruses 17 (9), 807-818 (2001) | 4e-96 | |
231 231RT |
0 | Evolution/quasispecies study |
| Luo (2009) | Prevalence of drug-resistant HIV-1 in rural areas of Hubei province in the People's Republic of China | J. Acquir. Immune Defic. Syndr. 50 (1), 1-8 (2009) | 0 | 152 152PR 152RT |
152 152RT |
100 | HIVDB |
| Lutz (2005) | ANALYSIS of polymorphism in the protease and reverse transcriptase genes of HIV type 1 CRF02_AG subtypes from drug-naive patients from Saint-Etienne, France | Unpublished | 1e-120 | 10 6PR 4RT |
10 6PR 4RT |
100 | HIVDB |
| Lwembe (2011) | Defining new unique recombinant forms of HIV-1 from Rural Cameroon Villagers | Unpublished | 0 | |
4 1RT 4IN |
0 | Pending |
| Ly (2007) | REVERSE transcriptase mutations in Cambodian CRF01_AE isolates after antiretroviral prophylaxis against HIV type 1 perinatal transmission | AIDS Res. Hum. Retroviruses 23 (12), 1563-1567 (2007) | 1e-133 | 27 27RT |
27 27RT |
100 | HIVDB |
| Ly (2005) | CHARACTERIZATION of mutations in HIV type 1 isolates from 144 Cambodian recently infected patients and pregnant women naive to antiretroviral drugs | AIDS Res. Hum. Retroviruses 21 (11), 971-976 (2005) | 1e-142 | 280 136PR 144RT |
280 136PR 144RT |
100 | HIVDB |
| Machado Zaldivar (2011) | Genetic diversity of HIV-1 in newly diagnosed Cuban patients | Unpublished | 0 | |
43 43PR 1RT |
0 | Unpublished |
| Machado (2002) | USE of the sensitive/less-sensitive (detuned) EIA strategy for targeting genetic analysis of HIV-1 to recently infected blood donors | AIDS 16 (1), 113-119 (2002) | 1e-135 | 31 30PR 31RT |
31 30PR 31RT |
100 | HIVDB |
| Machado (2003) | GENOTYPIC resistance and HIV-1 subtype in Brazilian children on dual and triple combination therapy | J. Clin. Virol. 30 (1), 24-31 (2004) | 1e-110 | 149 74PR 75RT |
149 74PR 75RT |
100 | HIVDB |
| Machado (2004) | ALTERNATIVE, age- and viral load-related routes of nelfinavir resistance in human immunodeficiency virus type 1-infected children receiving highly active antiretroviral therapy | Pediatr. Infect. Dis. J. 23 (11), 1057-1059 (2004) | 1e-108 | 11 8PR 3RT |
11 8PR 3RT |
100 | HIVDB |
| Machado (2004) | OVERVIEW of genotypic and clinical profiles of human immunodeficiency virus type 1-infected children in Rio de Janeiro, Brazil | An. Acad. Bras. Cienc. 76 (4), 727-741 (2004) | 1e-116 | 141 73PR 68RT |
141 73PR 68RT |
100 | HIVDB |
| Machado (2009) | Molecular epidemiology of HIV-1 in Northern Brazil: identification of subtypes C and D and the introduction of CRF02_AG in the Amazon Region of Brazil | Aids Research and Human Retrovirology 1 (1) (2009) | 1e-50 | 1 1PR |
1 1PR |
100 | HIVDB |
| Machuca (2004) | UNKNOWN co-receptor usage in HIV isolates from patients undergoing long-term antiretroviral therapy | Unpublished | 1e-114 | |
40 19PR 21RT |
0 | Case report(s) / study subset |
| Madsen (2006) | INTRODUCTION of HIV Type 1 into an Isolated Population: Molecular Epidemiologic Study from Greenland | AIDS Res. Hum. Retroviruses 23 (5), 675-681 (2007) | 0 | 75 75PR 75RT |
75 70PR 75RT |
100 | HIVDB |
| Madsen (2007) | REAPPEARANCE of an 11-year-old sequence in an HIV-1 infected patient during treatment interruption | Scand. J. Infect. Dis. 40 (2), 174-182 (2008) | 0 | |
18 6PR 18RT |
0 | Evolution/quasispecies study |
| Madsen (2008) | PREVALENCE of protease and gag gene mutations in human immunodeficiency virus type 1 patients failing on a boosted protease inhibitor regimen | Unpublished | 0 | |
20 13PR 20RT |
0 | Unpublished |
| Madsen (2008) | SHORT communication: high prevalence of drug-resistant human immunodeficiency virus type 1 in treatment-naive patients in Greenland | AIDS Res. Hum. Retroviruses 24 (8), 1073-1077 (2008) | 0 | |
14 12PR 14RT |
0 | Pending |
| Mahalanabis (2001) | IMPROVED detection of HIV-1 drug resistance mutations by an oligoligase assay compared to consensus sequencing | Unpublished | 1e-128 | |
149 149PR 149RT |
0 | ARV Rx and/or other data are N/A |
| Maier (1998) | MIXED reconstitution of mutated subunits of HIV-1 RT co-expressed in E. coli- two tags tie it up | Unpublished | 9e-94 | |
1 1PR 1RT |
0 | Laboratory/experimental isolate |
| Malet (2009) | Quasispecies variant dynamics during emergence of resistance to raltegravir in HIV-1-infected patients | J. Antimicrob. Chemother. 63 (4), 795-804 (2009) | 1e-166 | 22 22IN |
22 22IN |
100 | HIVDB |
| Maljkovic (2003) | LIMITED Transmission of Drug-Resistant HIV Type 1 in 100 Swedish Newly Detected and Drug-Naive Patients Infected with Subtypes A, B, C, D, G, U, and CRF01_AE | AIDS Res. Hum. Retroviruses 19 (11), 989-997 (2003) | 0 | 100 100PR 100RT |
100 100PR 100RT |
100 | HIVDB |
| Mamadou (2003) | EMERGENCE of complex and diverse CRF02-AG/CRF06-cpx recombinant HIV type 1 strains in Niger, West Africa | AIDS Res. Hum. Retroviruses 19 (1), 77-82 (2003) | 0 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Manenti (2009) | Young pregnant women living with HIV/AIDS are infected almost exclusive with HIV-1 clade C in Criciuma, South Brazil | AIDS Res Hum Retroviruses. 2010 Mar;26(3):351-7. | 0 | 11 11PR 11RT |
11 1PR 10RT |
100 | HIVDB |
| Marechal (2006) | INCREASING HIV Type 1 Polymorphic Diversity But No Resistance to Antiretroviral Drugs in Untreated Patients from Central African Republic: A 2005 Study | AIDS Res. Hum. Retroviruses 22 (10), 1036-1044 (2006) | 1e-147 | 99 30PR 69RT |
99 30PR 69RT |
100 | HIVDB |
| Margot (2010) | Phenotypic Susceptibility to Bevirimat in Isolates from HIV-1-Infected Patients without Prior Exposure to Bevirimat | Antimicrob. Agents Chemother. 54 (6), 2345-2353 (2 | 2e-51 | |
13 13PR |
0 | Pending |
| Markham (2007) | RELATIONSHIP of Injection Drug Use, Antiretroviral Therapy Resistance, and Genetic Diversity in the HIV-1 Pol Gene | Unpublished | 5e-53 | |
907 907PR |
0 | Evolution/quasispecies study |
| Marthas (1991) | RHESUS macaques inoculated with molecularly cloned simian immunodeficiency virus | J. Med. Primatol. 18, 311-319 (1991) | 8e-99 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Martinez (1999) | HUMAN immunodeficiency virus type 1 genetic evolution in patients with prolonged suppression of plasma viremia | Virology 256 (2), 180-187 (1999) | 9e-94 | |
60 60RT |
0 | Evolution/quasispecies study |
| Martinez-Picado (2000) | ANTIRETROVIRAL resistance during successful therapy of HIV type 1 infection | Proc. Natl. Acad. Sci. U.S.A. 97 (20), 10948-10953 (2000) | 0 | |
137 120PR 123RT |
0 | Evolution/quasispecies study |
| Martinson (2008) | HIV-1 transmission and drug resistance in women with and without prior exposure to single-dose nevirapine in Soweto, South Africa | Unpublished | 0 | 64 64PR 64RT |
64 8PR 64RT |
100 | HIVDB |
| Marx (1991) | ISOLATION of a simian immunodeficiency virus related to human immunodeficiency virus type 2 from a west African pet sooty mangabey | J. Virol. 65 (8), 4480-4485 (1991) | 3e-84 | 1 1IN |
1 1RT 1IN |
100 | HIVDB |
| Mas (1999) | HIV-1 Group O in Spain | Unpublished | 5e-12 | |
5 5RT |
0 | Pending |
| Mas (2000) | ROLE of a dipeptide insertion between codons 69 and 70 of HIV-1 reverse transcriptase in the mechanism of AZT resistance | EMBO J. 19 (21), 5752-5761 (2000) | 3e-69 | |
1 1RT |
0 | Laboratory/experimental isolate |
| Masciotra (2000) | EVIDENCE of a high frequency of HIV-1 subtype F infections in a heterosexual population in Buenos Aires, Argentina | AIDS Res. Hum. Retroviruses 16 (10), 1007-1014 (2000) | 1e-128 | 42 42PR |
42 42PR |
100 | HIVDB |
| Masciotra (2002) | DETECTION of Simian Immunodeficiency Virus in Diverse Species and of Human Immunodeficiency Virus Type 2 by Using Consensus Primers within the pol Region | J. Clin. Microbiol. 40 (9), 3167-3171 (2002) | 8e-80 | |
26 26IN |
0 | Gene fragment(s) |
| Masciotra (2007) | HIGH Concordance between HIV-1 Drug Resistance Genotypes Generated from Plasma and Dried Blood Spots in Treated Persons | Unpublished | 0 | |
66 43PR 66RT |
0 | Pending |
| Masharsky (2002) | MOLECULAR cloning and analysis of full-length genome of HIV type 1 strains prevalent in countries of the former Soviet Union | AIDS Res. Hum. Retroviruses 19 (10), 933-939 (2003) | 1e-163 | 2 2PR 2RT 2IN |
15 8PR 15RT 9IN |
13 | HIVDB |
| Maslin (2005) | ANTIRETROVIRAL Drug Resistance Among Drug-Naive HIV-1 Infected Patients in Djibouti (Horn of Africa) | AIDS (2005) In press | 3e-51 | |
11 11PR |
0 | Case report(s) / study subset |
| Masquelier (1999) | ZIDOVUDINE resensitization and dual HIV-1 resistance to zidovudine and lamivudine in the delta lamivudine roll-over study | Antivir. Ther. (Lond.) 4 (2), 69-77 (1999) | 2e-91 | 48 48RT |
50 50RT |
96 | HIVDB |
| Masquelier (2001) | GENOTYPIC and phenotypic resistance patterns of human immunodeficiency virus type 1 variants with insertions or deletions in the reverse transcriptase (RT): multicenter study of patients treated with RT inhibitors | Antimicrob. Agents Chemother. 45 (6), 1836-1842 (2001) | 5e-83 | 42 42RT |
43 43RT |
97 | HIVDB |
| Masquelier (2001) | ZIDOVUDINE genotypic resistance in HIV-1-infected newborns in the French perinatal cohort | J. Acquir. Immune Defic. Syndr. 27 (2), 99-104 (2001) | 9e-94 | |
34 34RT |
0 | ARV Rx and/or other data are N/A |
| Masquelier (2002) | MECHANISMS of Early Virologic Failure in Antiretroviral-Naive Patients Starting Protease Inhibitor-Containing Regimens: The APROVIR Study | J. Infect. Dis. 186 (10), 1503-1507 (2002) | 1e-122 | 47 24PR 23RT |
47 24PR 23RT |
100 | HIVDB |
| Matsuoka-Aizawa (2003) | ISOLATION and molecular characterization of a nelfinavir (NFV)-resistant human immunodeficiency virus type 1 that exhibits NFV-dependent enhancement of replication | J. Virol. 77 (1), 318-327 (2003) | 1e-108 | |
4 4PR |
0 | Case report(s) / study subset |
| Matteoli (2009) | Direct Submission | Submitted (27-MAY-2009) Department of Experimental | 0 | |
15 13PR 3RT |
0 | Unpublished |
| Matthews (2008) | CENTRAL role of reverting mutations in HLA associations with human immunodeficiency virus set point | J. Virol. 82 (17), 8548-8559 (2008) | 0 | |
449 28PR 423RT 276IN |
0 | Pending |
| Matthews (2009) | Adaptation of HIV-1 to HLA I | Unpublished | 2e-50 | |
60 60PR |
0 | Pending |
| Mayers (1993) | CHARACTERIZATION of HIV isolates arising after prolonged zidovudine therapy | J. Acquir. Immune Defic. Syndr. 5 (8), 749-759 (1992) | 2e-60 | |
9 9RT |
0 | Case report(s) / study subset |
| Mazzotta (2003) | SEQUENCE analysis of plasma-derived HIV-1 from patients living in Florence | Unpublished | 0 | |
20 19PR 20RT |
0 | ARV Rx and/or other data are N/A |
| Mbisa (2011) | Identification of mutations in all domains of non-B subtype HIV-1 reverse transcriptase linked to the development of Q151M multi-drug resistance: implications for drug susceptibility and replicative fitness | Unpublished | 0 | |
145 145RT |
0 | Evolution/quasispecies study |
| Mboudjeka (1999) | THE pol and env-based phylogenetic analysis of HIV-1 among the Muslim in the northern part of Cameroon | Unpublished | 6e-43 | |
1 1IN |
0 | Gene fragment(s) |
| Mboudjeka (2000) | GENETIC diversity of HIV-1 group M from Cameroon and Republic of Congo | Arch. Virol. 144 (12), 2291-2311 (1999) | 1e-48 | |
35 35IN |
0 | Gene fragment(s) |
| McClutchan (2003) | PRECISE mapping of recombination breakpoints suggests a common parent of two BC recombinant HIV type 1 strains circulating in China | AIDS Res. Hum. Retroviruses 18 (15), 1135-1140 (2002) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| McConnell (2007) | MOLECULAR epidemiology of HIV type 1 in newly diagnosed patients in southern Spain | AIDS Res. Hum. Retroviruses 24 (6), 881-887 (2008) | 6e-51 | 33 33PR 33RT |
33 33PR |
100 | HIVDB |
| McCutchan (2003) | HIV Type 1 Circulating Recombinant Form CRF09_cpx from West Africa Combines Subtypes A, F, G, and May Share Ancestors with CRF02_AG and Z321 | AIDS Res. Hum. Retroviruses 20 (8), 819-826 (2004) | 1e-165 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| McCutchan (2005) | IN-DEPTH analysis of a heterosexually acquired human immunodeficiency virus type 1 superinfection: evolution, temporal fluctuation, and intercompartment dynamics from the seronegative window period through 30 months postinfection | J. Virol. 79 (18), 11693-11704 (2005) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| McIntosh (2000) | NUCLEOTIDE sequence of a Cambridge isolate of human immunodeficiency virus type 1 | Unpublished | 1e-163 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| McLaughlin (2004) | SEQUENCE Diversity of HIV-1 Genomes from the HIV Vaccine Trials Network | Unpublished | 0 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| McNulty (2006) | EVALUATION of Dried Blood Spots for Human Immunodeficiency Virus Type 1 Drug Resistance Testing | J. Clin. Microbiol. 45 (2), 517-521 (2007) | 1e-141 | 43 43PR 43RT |
43 43RT |
100 | HIVDB |
| Medrano (1999) | SEQUENCE analysis of the polymerase domain of HIV-1 reverse transcriptase in naive and zidovudine-treated individuals reveals a higher polymorphism in alpha-helices as compared with beta-strands | Virus Genes 18 (3), 203-210 (1999) | 1e-161 | |
69 69RT |
0 | Evolution/quasispecies study |
| Meersseman (2006) | FATAL brain necrosis in primary HIV infection | Lancet 366 (9488), 866 (2005) | 0 | |
3 3PR 3RT |
0 | Case report(s) / study subset |
| Meloni (2004) | DISTINCT Human Immunodeficiency Virus Type 1 Subtype A Virus Circulating in West Africa: Sub-Subtype A3 | J. Virol. 78 (22), 12438-12445 (2004) | 0 | 5 5PR 5RT 5IN |
5 5PR 5RT 5IN |
100 | HIVDB |
| Mendez Ortega (2011) | An RNAi in silico approach to find an optimal shRNA cocktail against HIV-1 | Virol. J. 7 (1), 369 (2010) | 3e-50 | |
9 9PR |
0 | Evolution/quasispecies study |
| Meng (2008) | CONSTRUCTION and Characterization of an Infectious Molecular Clone of HIV Type 1 CRF07_BC | AIDS Res. Hum. Retroviruses 24 (2), 259-264 (2008) | 0 | |
2 2PR 2RT 2IN |
0 | Laboratory/experimental isolate |
| Meng (2007) | GENETIC Characterization of Three Newly Isolated CRF07_BC Near Full-Length Genomes in China | AIDS Res. Hum. Retroviruses 23 (8), 1049-1054 (2007) | 0 | |
3 3PR 3RT 3IN |
0 | Case report(s) / study subset |
| Mens (2011) | HIV-1 Continues to Replicate and Evolve in Patients with Natural Control of HIV infection | J. Virol. (2010) In press | 1e-52 | |
158 158PR |
0 | Pending |
| Metzker (2002) | MOLECULAR Evidence of HIV-1 Transmission in a Criminal Case | Proc. Natl. Acad. Sci. U.S.A. 99, 14292-14297 (2002) | 9e-94 | |
42 8PR 42RT |
0 | Evolution/quasispecies study |
| Mezei (2011) | Molecular epidemiological analysis of env and pol sequences in newly diagnosed HIV-1 infected, untreated patients in Hungary | AIDS Res. Hum. Retroviruses (2011) In press | 2e-51 | 28 28PR |
28 28PR |
100 | HIVDB |
| Miao (2010) | Sequence and characterization of full-length genome of two HIV-1 strains isolated from two infected patients in China | Unpublished | 0 | |
2 2RT 2IN |
0 | Unpublished |
| Michael (1995) | DEFECTIVE accessory genes in a human immunodeficiency virus type 1-infected long-term survivor lacking recoverable virus | J. Virol. 69 (7), 4228-4236 (1995) | 1e-16 | |
22 22IN |
0 | Gene fragment(s) |
| Middleton (2002) | EVIDENCE for transmission of two different circular recombinant form-AE strains in HIV intravenous users in Australia | Unpublished | 1e-123 | |
12 12PR 12RT |
0 | Evolution/quasispecies study |
| Mikhail (2006) | FULL length genome analysis of HIV-1 viral evolution, and date of origin in an American cohort | Unpublished | 0 | |
34 34PR 34RT 34IN |
0 | Unpublished |
| Milazzo (2000) | EVIDENCE of stavudine-related phenotypic resistance among zidovudine-pretreated HIV-1-infected subjects receiving a therapeutic regimen of stavudine plus lamivudine | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 22 (1), 101 | 4e-96 | 40 40RT |
40 40RT |
100 | HIVDB |
| Mintsa (2008) | MOLECULAR epidemiological of HIV in North West of Gabon: Dominance of recombinant CRF02 | Unpublished | 2e-50 | 2 2PR 2RT |
2 2PR |
100 | Case report(s) / study subset |
| Mintsa-Ndong (2009) | High HIV Type 1 prevalence and wide genetic diversity with dominance of recombinant strains but low level of antiretroviral drug-resistance mutations in untreated patients in northeast Gabon, Central Africa | AIDS Res. Hum. Retroviruses 25 (4), 411-418 (2009) | 1e-145 | 9 8PR 8RT |
9 5PR 4RT |
100 | HIVDB |
| Mitsuya (2006) | N88D Facilitates the Co-occurrence of D30N and L90M and the Development of Multidrug Resistance in HIV Type 1 Protease following Nelfinavir Treatment Failure | AIDS Res. Hum. Retroviruses 22 (12), 1300-1305 (2006) | 5e-51 | 16 16PR |
18 18PR |
88 | HIVDB |
| Miura (2004) | SIMIAN and human immunodeficiency chimeric virus, NM3rN clone | Published Only in Database (2004) | 0 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Miura (2010) | Impaired fitness of acute/early viruses in persons who become HIV controllers | J Virol. 2010 Aug;84(15):7581-91. Epub 2010 May 26. | 0 | |
23 11PR 23RT 23IN |
0 | Unpublished |
| Miura (2010) | Long-term successful control of super-multi-drug resistant HIV-1 by a combination therapy of Lamivdine, Raltegravir, boosted-Darunavir and Etravirin | Unpublished | 1e-152 | |
3 3RT |
0 | Pending |
| Miura (2008) | GENETIC characterization of human immunodeficiency virus type 1 in elite controllers: lack of gross genetic defects or common amino acid changes | J. Virol. 82 (17), 8422-8430 (2008) | 0 | |
147 37PR 41RT 69IN |
0 | Pending |
| Miura (2008) | HLA-ASSOCIATED Alterations in Replication Capacity of Chimeric NL4-3 Viruses Carrying gag-protease from Elite Controllers of Human Immunodeficiency Virus Type 1 | J. Virol. 83 (1), 140-149 (2009) | 1e-52 | |
31 31PR |
0 | Case report(s) / study subset |
| Mochizuki (1999) | AN infectious DNA clone of HIV type 1 subtype C | AIDS Res. Hum. Retroviruses 15 (14), 1321-1324 (1999) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Mokili (2002) | IDENTIFICATION of a novel clade of human immunodeficiency virus type 1 in democratic republic of congo | AIDS Res. Hum. Retroviruses 18 (11), 817-823 (2002) | 1e-90 | 1 1PR 1RT 1IN |
1 1PR 1RT |
100 | HIVDB |
| Monie (2005) | A Novel Assay Allows Genotyping of the Latent Reservoir for Human Immunodeficiency Virus Type 1 in the Resting CD4+ T Cells of Viremic Patients | Unpublished | 1e-134 | |
400 326PR 334RT |
0 | Evolution/quasispecies study |
| Monno (2003) | MUTATIONAL patterns of paired blood and rectal biopsies in HIV-infected patients on HAART | J. Med. Virol. 70 (1), 1-9 (2003) | 1e-178 | 17 17PR 17RT |
32 30PR 32RT |
53 | HIVDB |
| Monno (2003) | HIV-1 subtypes and circulating recombinant forms (CRFs) from HIV-infected patients residing in two regions of central and southern Italy | J. Med. Virol. 75 (4), 483-490 (2005) | 0 | |
6 6PR 6RT |
0 | Case report(s) / study subset |
| Monno (2003) | SEQUENCE analysis of plasma-derived HIV-1 from patients living in Apulia | Unpublished | 1e-179 | |
34 31PR 34RT |
0 | ARV Rx and/or other data are N/A |
| Monno (2007) | A multidrug-resistant (MDR) HIV-1 infection in a homosexual man and identified source patient | Unpublished | 1e-177 | |
4 4RT |
0 | Case report(s) / study subset |
| Montavon (2000) | MOST env and gag subtype A HIV-1 viruses circulating in West and West Central Africa are similar to the prototype AG recombinant virus IBNG | J. Acquir. Immune Defic. Syndr. 23 (5), 363-374 (2000) | 1e-164 | 13 13PR 13RT 2IN |
13 13PR 13RT 1IN |
100 | HIVDB |
| Montavon (2001) | THE identification of a complex A/G/I/J recombinant HIV type 1 virus in various West African countries | AIDS Res. Hum. Retroviruses 15 (18), 1707-1712 (1999) | 7e-82 | 1 1PR 1RT 1IN |
2 2PR 2RT |
50 | HIVDB |
| Montavon (2001) | CRF06-CPX: a new Circulating Recombinant Form of HIV-1 in West Africa,involving subtypes A, G, K and J | Unpublished | 1e-165 | 2 2PR 2RT 2IN |
9 9PR 9RT 2IN |
22 | HIVDB |
| Montavon (2002) | IDENTIFICATION of a new circulating recombinant form of HIV type 1, CRF11-cpx, involving subtypes A, G, J, and CRF01-AE, in Central Africa | AIDS Res. Hum. Retroviruses 18 (3), 231-236 (2002) | 1e-75 | 3 3PR 3RT 3IN |
3 3PR 3RT |
100 | HIVDB |
| Montes (2003) | COMPARISON of drug resistance mutations and their interpretation in patients infected with non-B HIV-1 variants and matched patients infected with HIV-1 subtype B | J. Acquir. Immune Defic. Syndr. 35 (4), 329-336 (2004) | 1e-149 | 184 153PR 184RT |
186 155PR 186RT |
98 | HIVDB |
| Moore (2006) | EVIDENCE of HIV-1 adaptation to HLA-restricted immune responses at a population level | Science 296 (5572), 1439-1443 (2002) | 1e-124 | |
3 3RT |
0 | Case report(s) / study subset |
| Moriyama (1998) | HIV-1 in Ghana | Unpublished | 1e-129 | |
1 1IN |
0 | Unpublished |
| Moriyama (1998) | HIV-1 in Congo | Unpublished | 1e-128 | |
1 1IN |
0 | Pending |
| Morris (1999) | MOSAIC structure of the human immunodeficiency virus type 1 genome infecting lymphoid cells and the brain: evidence for frequent in vivo recombination events in the evolution of regional populations | J. Virol. 73 (10), 8720-8731 (1999) | 9e-94 | |
11 11RT |
0 | Evolution/quasispecies study |
| Mouroux (2001) | LOW rate of emergence of TAMs | Unpublished | 1e-98 | |
5 5RT |
0 | Case report(s) / study subset |
| Moussa (2010) | First Data on HIV-1 Resistance Mutations to Antiretroviral Drugs in Central African Republic | AIDS Res. Hum. Retroviruses 26 (11), 1247-1248 (20 | 4e-50 | |
7 7PR |
0 | Pending |
| Mueller (2007) | DUAL Selection Pressure by Drugs and HLA Class I-Restricted Immune Responses on Human Immunodeficiency Virus Type 1 Protease | J. Virol. 81 (6), 2887-2898 (2007) | 2e-52 | |
71 71PR |
0 | Pending |
| Munoz-Nieto (2008) | HIV Type 1 Intersubtype Recombinants during the Evolution of a Dual Infection with Subtypes B and G | AIDS Res. Hum. Retroviruses 24 (2), 337-343 (2008) | 0 | |
12 4PR 11RT 12IN |
0 | Case report(s) / study subset |
| Murillo (2009) | Prevalence of drug resistance and importance of virus load measurements in Honduran HIV patients failing antiretroviral treatment | HIV Med. 2010 Feb;11(2):95-103. Epub 2009 Aug 3. | 1e-149 | |
124 98PR 51RT |
0 | Pending |
| Mwaengo (1998) | MOLECULAR cloning and characterization of viruses isolated from chimpanzees with pathogenic human immunodeficiency virus type 1 infections | J. Virol. 72 (11), 8976-8987 (1998) | 1e-165 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Mwangi (2006) | VIREMIC sero-negative donations and genetic diversity of viral infections among blood donors in Kenya: implications on blood safety | Unpublished | 5e-48 | |
17 17IN |
0 | Gene fragment(s) |
| Nabatov (2001) | STUDY of distribution of AZT-resistant subtype B HIV-1 during the second stage of HIV epidemic in former Soviet Union countries | Unpublished | 9e-94 | |
3 3RT |
0 | Case report(s) / study subset |
| Nadai (2009) | HIV-1 epidemic in the Caribbean is dominated by subtype B | PLoS ONE 4 (3), E4814 (2009) | 5e-49 | |
2 2PR |
0 | Pending |
| Nagai (2011) | Construction and characterization of infectious molecular clones derived from japanese blood donors | Unpublished | 0 | |
2 2PR 2RT 2IN |
0 | Laboratory/experimental isolate |
| Najera (1995) | POL gene quasispecies of human immunodeficiency virus: mutations associated with drug resistance in virus from patients undergoing no drug therapy | J. Virol. 69 (1), 23-31 (1995) | 9e-97 | |
118 118RT |
0 | Evolution/quasispecies study |
| Nakano (1997) | CLONAL selection of HIV type 1 variants associated with resistance to foscarnet in vitro: confirmation by molecular evolutionary analysis | AIDS Res. Hum. Retroviruses 13 (7), 563-573 (1997) | 1e-98 | |
51 51RT |
0 | Evolution/quasispecies study |
| Nasioulas (1999) | MOLECULAR analysis of the full-length genome of HIV type 1 subtype I: evidence of A/G/I recombination | AIDS Res. Hum. Retroviruses 15 (8), 745-758 (1999) | 1e-163 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Naugler (2002) | T69D/N pol Mutation, HIV-1 RNA Levels and Syncytium-Inducing (SI) Phenotype Were Associated With CD4 Cell Depletion During Didanosine Therapy | Unpublished | 4e-96 | 50 50RT |
50 50RT |
100 | HIVDB |
| Ndembi (2003) | HIV type 1 infection in Pygmy hunter gatherers is from contact with Bantu rather than from nonhuman primates | AIDS Res. Hum. Retroviruses 19 (5), 435-439 (2003) | 1e-48 | |
10 10IN |
0 | Gene fragment(s) |
| Ndembi (2004) | GENETIC Diversity of HIV Type 1 in Rural Eastern Cameroon | J. Acquir. Immune Defic. Syndr. 37 (5), 1641-1650 (2004) | 1e-48 | |
20 20IN |
0 | Gene fragment(s) |
| Ndembi (2008) | TRANSMITTED Antiretroviral Drug Resistance Surveillance among Newly HIV Type 1-Diagnosed Women Attending an Antenatal Clinic in Entebbe, Uganda | AIDS Res. Hum. Retroviruses 24 (6), 889-895 (2008) | 2e-51 | 32 32PR 32RT |
32 32PR |
100 | HIVDB |
| Ndembi (2009) | Viral rebound and emergence of drug resistance in the absence of viral load testing: a randomized comparison between Combivir/nevirapine and Combivir/abacavir | J Infect Dis. 2010 Jan 1;201(1):106-13. | 2e-52 | 49 49PR 49RT |
49 49PR |
100 | HIVDB |
| Ndembi (2011) | Transmitted antiretroviral drug resistance among newly HIV-1 diagnosed young individuals in Kampala, Uganda | AIDS (2011) In press | 6e-52 | 36 36PR 36RT |
36 36PR |
100 | HIVDB |
| Ndembi (2011) | High Frequency of HIV-1 Dual Infections in Cameroon, West Central Africa | J. Acquir. Immune Defic. Syndr. 57 (2), E25-E27 (2 | 2e-49 | |
54 54IN |
0 | Pending |
| Ndongmo (2006) | HIV Genetic Diversity in Cameroon: Possible Public Health Importance | AIDS Res. Hum. Retroviruses 22 (8), 812-816 (2006) | 3e-50 | 37 37PR |
37 37PR |
100 | HIVDB |
| Ndung'u (2000) | MOLECULAR cloning and biological characterization of full-length HIV-1 subtype C from Botswana | Virology 278 (2), 390-399 (2000) | 1e-162 | |
4 4PR 4RT 4IN |
0 | Case report(s) / study subset |
| Ndung'u (2001) | CONSTRUCTION and analysis of an infectious human Immunodeficiency virus type 1 subtype C molecular clone | J. Virol. 75 (11), 4964-4972 (2001) | 1e-162 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Neel (2010) | Molecular epidemiology of simian immunodeficiency virus infection in wild-living gorillas | J. Virol. 84 (3), 1464-1476 (2010) | 1e-53 | |
24 24IN |
0 | Gene Fragments |
| Negedu-momoh (2011) | Evaluation of antiretroviral drug resistant variants among HIV art experienced and naive patients in nigeria | Unpublished | 2e-49 | |
3 3PR |
0 | Unpublished |
| Neilson (1999) | SUBTYPES of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya | J. Virol. 73 (5), 4393-4403 (1999) | 1e-165 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Nerrienet (2003) | A new chimpanzee lentivirus (SIVcpzCAM13) in a wild-born Pan troglodytes troglodytes in Cameroon | Unpublished | 1e-128 | |
1 1RT |
0 | Pending |
| Nerrienet (2003) | SIMIAN Immunodeficiency Virus Infection in Wild-Caught Chimpanzees from Cameroon | J. Virol. 79 (2), 1312-1319 (2005) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Neumann (1995) | RESTRICTION of human immunodeficiency virus type 1 production in a human astrocytoma cell line is associated with a cellular block in Rev function | J. Virol. 69 (4), 2159-2167 (1995) | 1e-165 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Ng (2011) | Molecular Epidemiology of HIV-1 in Singapore and Identification of New CRF01_AE/B Recombinant Forms | Unpublished | 1e-51 | 151 151PR |
151 151PR |
100 | HIVDB |
| Nguyen (2011) | Cloning and expression of protease-encoding gene of HIV type 1 isolated from Vietnam | Tap Chi Cong Nghe Sinh Hoc (2011) In press | 4e-49 | |
1 1PR |
0 | Laboratory/experimental isolate |
| Niama (2009) | CRF45_AKU, a Circulating Recombinant from Central Africa, Is Probably the Common Ancestor of HIV Type 1 MAL and HIV Type 1 NOGIL | AIDS Res. Hum. Retroviruses 25 (12), 1345-1353 (20 | 0 | 4 4PR 4RT 4IN |
6 4RT 6IN |
66 | HIVDB |
| Nielsen (2003) | THE CATCH study - Combined Analysis of Resistance Transmission over time of Chronically and acute infected HIV patients | Unpublished | 1e-174 | |
33 33PR 30RT |
0 | HIVDB |
| Njai (2007) | THE predominance of Human Immunodeficiency Virus type 1 (HIV-1) circulating recombinant form 02 (CRF02_AG) in West Central Africa may be related to its replicative fitness | Retrovirology 3, 40 (2006) | 0 | 27 27PR 27RT 27IN |
27 10PR 27RT 27IN |
100 | HIVDB |
| Njouom (2003) | ASSESSMENT of HIV-1 subtyping for Cameroon strains using phylogenetic analysis of pol gene sequences | J. Virol. Methods 110 (1), 1-8 (2003) | 9e-95 | 40 23PR 30RT |
40 23PR 30RT |
100 | HIVDB |
| Nkengasong (2001) | DISTRIBUTION of HIV-1 subtypes among HIV-seropositive patients in the interior of Cote d'Ivoire | J. Acquir. Immune Defic. Syndr. 23 (5), 430-436 (2000) | 1e-108 | 12 12PR |
12 12PR |
100 | HIVDB |
| Noel (2003) | PHYLOGENETIC relationships between Puerto Rico and Continental USA HIV-1 pol sequences: a shared HIV-1 infection in USA and PR. | Unpublished | 1e-122 | |
584 287PR 297RT |
0 | Pending |
| Nouhin (2010) | Natural polymorphisms of HIV-1 CRF01_AE integrase gene in ARV-naive individuals in Cambodia, Vietnam and Thailand: an ANRS AC12 resistance working group study | Unpublished | 1e-164 | 50 50IN |
50 50IN |
100 | HIVDB |
| Nouhin (2010) | Natural polymorphisms of HIV-1 CRF01_AE integrase coding region in ARV-naive individuals in Cambodia, Thailand and Vietnam: An ANRS AC12 working group study | Infect. Genet. Evol. 11 (1), 38-43 (2011) | 1e-163 | |
37 37IN |
0 | Pending |
| Novelli (2002) | CONSTRUCTION and characterization of a full-length HIV-1(92UG001) subtype D infectious molecular clone | AIDS Res. Hum. Retroviruses 18 (1), 85-88 (2002) | 1e-162 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | Laboratory/experimental isolate |
| Novembre (1992) | SIV from stump-tailed macaques: molecular characterization of a highly transmissible primate lentivirus | Virology 186 (2), 783-787 (1992) | 1e-100 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Novembre (1993) | MULTIPLE viral determinants contribute to pathogenicity of the acutely lethal simian immunodeficiency virus SIVsmmPBj variant | J. Virol. 67 (5), 2466-2474 (1993) | 1e-100 | |
3 3RT 3IN |
0 | Laboratory/experimental isolate |
| Novembre (1998) | ISOLATION and characterization of a neuropathogenic simian immunodeficiency virus derived from a sooty mangabey | J. Virol. 72 (11), 8841-8851 (1998) | 1e-100 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Novembre (2010) | Neuropathogenic SIVsmmFGb Genetic Diversity and Selection-Induced Tissue-Specific Compartmentalization During Asymptomatic Infection and Temporal Evolution of Viral Genes in Lymphoid and Central Nervous System Tissues | Unpublished | 1e-101 | |
857 857IN |
0 | Evolution/quasispecies study |
| Novitsky (1999) | MOLECULAR cloning and phylogenetic analysis of human immunodeficiency virus type 1 subtype C: a set of 23 full-length clones from Botswana | J. Virol. 73 (5), 4427-4432 (1999) | 1e-165 | 23 23PR 23RT 23IN |
23 23PR 23RT 23IN |
100 | HIVDB |
| Novitsky (2000) | HIV type 1 A/J recombinant with a pronounced pol gene mosaicism | AIDS Res. Hum. Retroviruses 16 (10), 1015-1020 (2000) | 1e-164 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Novitsky (2002) | HUMAN immunodeficiency virus type 1 subtype C molecular phylogeny: consensus sequence for an AIDS vaccine design? | J. Virol. 76 (11), 5435-5451 (2002) | 1e-165 | 42 42PR 42RT 42IN |
42 42PR 42RT 42IN |
100 | HIVDB |
| Novitsky (2002) | HIV-1 subtype C/Denv/C recombinant from Botswana | Unpublished | 1e-102 | |
1 1PR 1RT 1IN |
0 | Unpublished |
| Novitsky (2007) | THE Reverse Transcriptase 67N 70R 215Y Genotype Is the Predominant TAM Pathway Associated with Virologic Failure among HIV Type 1C-Infected Adults Treated with ZDV/ddI-Containing HAART in Southern Africa | AIDS Res. Hum. Retroviruses 23 (7), 868-878 (2007) | 0 | 63 63PR 63RT |
63 20PR 63RT |
100 | HIVDB |
| Ntemgwa (2007) | VARIATIONS in Reverse Transcriptase and RNase H Domain Mutations in Human Immunodeficiency Virus Type 1 Clinical Isolates Are Associated with Divergent Phenotypic Resistance to Zidovudine | Antimicrob. Agents Chemother. 51 (11), 3861-3869 (2007) | 0 | |
19 6PR 16RT |
0 | Pending |
| Ntemgwa (2007) | NEAR Full-Length Genomic Analysis of a Novel Subtype A1/C Recombinant HIV Type 1 Isolate from Canada | AIDS Res. Hum. Retroviruses 24 (4), 655-659 (2008) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | Case report(s) / study subset |
| Ntemgwa (2008) | DISCREPANCIES in Assignment of Subtype/Recombinant Forms by Genotyping Programs for HIV Type 1 Drug Resistance Testing May Falsely Predict Superinfection | AIDS Res. Hum. Retroviruses 24 (7), 995-1002 (2008) | 0 | |
1 1RT |
0 | Case report(s) / study subset |
| Nukoolkarn (2005) | SEQUENCE variability of the HIV type 1 protease gene in thai patients experienced with antiretroviral therapy | AIDS Res. Hum. Retroviruses 20 (12), 1368-1372 (2004) | 4e-51 | 44 44PR |
44 44PR |
100 | HIVDB |
| Nunberg (1991) | VIRAL resistance to human immunodeficiency virus type 1-specific pyridinone reverse transcriptase inhibitors | J. Virol. 65 (9), 4887-4892 (1991) | 1e-98 | |
2 2RT |
0 | Laboratory/experimental isolate |
| Nwobegahay (2009) | Prevalence of drug resistance mutations among drug-naive HIV-1 infected individuals in a treatment site in the Waterberg District of South Africa | Unpublished | 0 | 53 7PR 46RT |
53 7PR 46RT |
100 | HIVDB |
| Nwobegahay (2009) | Baseline Genetic Resistance of HIV Infected Patients Entering Antiretroviral Treatment Program at Two Treatment Sites in Limpopo Province, South Africa | Unpublished | 0 | 85 18PR 67RT |
85 18PR 67RT |
100 | HIVDB |
| Nwobegahay (2010) | Prevalence of antiretroviral drug resistance mutations among drug-naive HIV-1-infected persons attending Mankweng Hospital, South Africa | Unpublished | 0 | |
47 11PR 36RT |
0 | Unpublished |
| Nyambi (2009) | HIV-1 Reverse Transcriptase Drug Resistance Mutations in Chronically Infected HAART-Experienced and Naive Individuals in Cameroon | Unpublished | 0 | 28 28RT |
28 28RT |
100 | HIVDB |
| Nyombi (2007) | DIVERSITY of human immunodeficiency virus type 1 subtypes in Kagera and Kilimanjaro regions, Tanzania | AIDS Res. Hum. Retroviruses 24 (6), 761-769 (2008) | 0 | 166 165PR 166RT |
166 59PR 166RT |
100 | HIVDB |
| O'Brien (1996) | HIV-1 tropism for mononuclear phagocytes can be determined by regions of gp120 outside the CD4-binding domain | Nature 348 (6296), 69-73 (1990) | 1e-163 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| O'Connell (2010) | Prolonged control of an HIV-1 escape variant following treatment interruption in an HLA-B*27 positive patient | Unpublished | 0 | |
2 2PR 1RT 1IN |
0 | Case report(s) / study subset |
| O'Connell (2011) | Sustained Elite Suppression of Replication Competent HIV-1 in a Patient Treated with Rituximab Based Chemotherapy | Unpublished | 0 | |
2 2PR 2RT 2IN |
0 | Case report(s) / study subset |
| O'Connor (2004) | A Dominant Role for CD8+-T-Lymphocyte Selection in Simian Immunodeficiency Virus Sequence Variation | J. Virol. 78 (24), 14012-14022 (2004) | 0 | |
26 26RT 26IN |
0 | Laboratory/experimental isolate |
| Ochoa (2005) | GENOTYPIC and phenotypic patterns at virological failure in a simplification trial comparing nevirapine, efavirenz or abacavir as substitutes of a protease inhibitor (the NEFA resistance substudy) | Unpublished | 0 | 25 25PR 25RT |
26 25PR 25RT |
96 | HIVDB |
| Oelrichs (1999) | FULL-LENGTH genomic sequence of an HIV type 1 subtype G from Kinshasa | AIDS Res. Hum. Retroviruses 15 (6), 585-589 (1999) | 1e-165 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Oelrichs (1999) | GENOMIC sequence of HIV-1 from four members of the Sydney Blood Bank cohort of long term non-progressors | Unpublished | 1e-163 | 3 3PR 3RT 3IN |
5 5PR 5RT 5IN |
60 | HIVDB |
| Oelrichs (1999) | SEQUENCE of HIV-1 subtype A/E polymerase gene | Unpublished | 1e-164 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Oelrichs (1999) | SEQUENCE of HIV-1 subtype B gag gene poorly detected by both RT-PCR and P24 monoclonal during symptomatic seroconversion | Unpublished | 1e-114 | |
1 1PR |
0 | Case report(s) / study subset |
| Oelrichs (2000) | RAPID full-length genomic sequencing of two cytopathically heterogeneous Australian primary HIV-1 isolates | J. Biomed. Sci. 7 (2), 128-135 (2000) | 1e-164 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Oelrichs (2000) | NEAR full-length proviral sequence of HIV-1 from an individual homozygous for the delta-32 CCR5 allele | Unpublished | 1e-155 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Oelrichs (2001) | A novel subtype A/G/J recombinant full-length HIV type 1 genome from Burkina Faso | AIDS Res. Hum. Retroviruses 14 (16), 1495-1500 (1998) | 1e-164 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Ojesina (2006) | SUBTYPE-SPECIFIC Patterns in HIV Type 1 Reverse Transcriptase and Protease in Oyo State, Nigeria: Implications for Drug Resistance and Host Response | AIDS Res. Hum. Retroviruses 22 (8), 770-779 (2006) | 0 | 43 8PR 35RT |
43 8PR 35RT |
100 | HIVDB |
| Ojesina (2008) | CHARACTERIZATION of HIV Type 1 Reverse Transcriptase Mutations in Infants Infected by Mothers Who Received Peripartum Nevirapine Prophylaxis in Jos, Nigeria | AIDS Res. Hum. Retroviruses 23 (12), 1587-1592 (2007) | 0 | 14 14RT |
14 14RT |
100 | HIVDB |
| Olivares (1998) | COMPLETE sequence of an infectious molecular clone derived from a Spanish HIV type I isolate | AIDS Res. Hum. Retroviruses 14 (18), 1649-1651 (1998) | 1e-164 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Oliveira (2011) | Genetic diversity and drug resistance profiles in HIV-1 infected patients from Cape Verde Islands | Unpublished | 1e-174 | |
26 26RT |
0 | Unpublished |
| Onanga (2006) | SIVSUN natural history in Cercopithecus solatus and Macaca fascicularis: Evidence of a common ''Evolution Profile'' in african monkeys related to the lack of pathogeny of SIVs in natural host | Unpublished | 3e-87 | 1 1IN |
1 1IN |
100 | HIVDB |
| Op de Coul (2000) | INDEPENDENT introduction of transmissible F/D recombinant HIV-1 from Africa into Belgium and The Netherlands | Virology 270 (2), 267-277 (2000) | 1e-114 | 6 6PR 6RT |
6 6PR 6RT |
100 | HIVDB |
| Op De Coul (2000) | GENETIC evidence of multiple transmissions of HIV type 1 subtype F within Romania from adult blood donors to children | AIDS Res. Hum. Retroviruses 16 (4), 327-336 (2000) | 7e-86 | 14 14PR 14RT |
14 14PR 14RT |
100 | HIVDB |
| Oram (1990) | NUCLEOTIDE sequence of a Ugandan HIV-1 provirus reveals genetic diversity from other HIV-1 isolates | AIDS Res. Hum. Retroviruses 6 (9), 1073-1078 (1990) | 1e-164 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Orlandi (1999) | ANALYSIS of HIV-1 reverse transcriptase gene mutations in infected children treated with zidovudine | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 19 (3), 230 | 3e-93 | 51 51RT |
52 52RT |
98 | HIVDB |
| Osterhaus (1999) | ISOLATION and partial characterization of a lentivirus from talapoin monkeys (Myopithecus talapoin) | Virology 260 (1), 116-124 (1999) | 0.3 | |
1 1RT |
0 | Gene fragment(s) |
| Pace (2007) | POPULATION level analysis of human immunodeficiency virus type 1 hypermutation and its relationship with APOBEC3G and vif genetic variation | J. Virol. 80 (18), 9259-9269 (2006) | 0 | |
130 100PR 122RT 125IN |
0 | Sequence quality |
| Palmer (2002) | REVERSE transcriptase and protease sequence evolution in two HIV-1-infected couples | J. Acquir. Immune Defic. Syndr. 31 (3), 285-290 (2002) | 1e-121 | 18 18PR 18RT |
18 18PR 18RT |
100 | HIVDB |
| Palumbo (2001) | ANTIRETROVIRAL resistance mutations among pregnant human immunodeficiency virus type 1-infected women and their newborns in the United States: vertical transmission and clades | J. Infect. Dis. 184 (9), 1120-1126 (2001) | 2e-85 | |
6 6RT |
0 | Case report(s) / study subset |
| Pando (2007) | HIGH Genetic Variability in Female Sex Workers (FSWs) from Argentina | Unpublished | 1e-145 | |
8 8PR 8RT |
0 | Case report(s) / study subset |
| Pandrea (2001) | HIV type 1 genetic diversity and genotypic drug susceptibility in the Republic of Moldova | AIDS Res. Hum. Retroviruses 17 (13), 1297-1304 (2001) | 7e-86 | 6 6PR 6RT |
6 6PR 6RT |
100 | HIVDB |
| Pandrea (2002) | ANALYSIS of partial pol and env sequences indicates a high prevalence of HIV type 1 recombinant strains circulating in Gabon | AIDS Res. Hum. Retroviruses 18 (15), 1103-1116 (2002) | 1e-102 | 37 30PR 36RT |
37 36PR 36RT |
100 | HIVDB |
| Papa (2002) | HIV-1 subtypes and circulating recombinant forms (CRFs) in Northern Greece | Virus Res. 85 (1), 85-93 (2002) | 5e-92 | 50 50RT |
50 50RT |
100 | HIVDB |
| Papa (2002) | GENETIC Variation of the Protease and Reverse Transcriptase Genes in HIV-1 CRF04_cpx Strains | AIDS Res. Hum. Retroviruses 18 (9), 677-680 (2002) | 7e-80 | 10 7PR 3RT |
10 7PR 3RT |
100 | HIVDB |
| Papathanasopoulos (2002) | FULL-LENGTH Genome Analysis of HIV-1 Subtype C Utilizing CXCR4 and Intersubtype Recombinants Isolated in South Africa | AIDS Res. Hum. Retroviruses 18 (12), 879-886 (2002) | 1e-165 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Papathanasopoulos (2003) | FULL-LENGTH Genome Characterization of HIV Type 1 Subtype C Isolates from Two Slow-Progressing Perinatally Infected Siblings in South Africa | AIDS Res. Hum. Retroviruses 19 (11), 1033-1037 (2003) | 0 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Papathanasopoulos (2010) | Characterization of HIV type 1 genetic diversity among South African participants enrolled in the AIDS Vaccine Integrated Project (AVIP) study | AIDS Res. Hum. Retroviruses 26 (6), 705-709 (2010) | 1e-168 | 67 35PR 35RT 32IN |
67 5PR 35RT 32IN |
100 | HIVDB |
| Papuashvili (2005) | CHARACTERISTICS of HIV-1 env V3 loop sequences for subtype A1 variant spread in Eastern Europe | Infect. Genet. Evol. 5 (1), 45-53 (2005) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Paraschiv (2007) | GENOTYPIC analysis of subtype F HIV-1 reverse transcriptase gene carrying both K65R mutation and TAMs | Int J Infect Dis. 2009 Jan;13(1):81-9. Epub 2008 Jul 15. | 1e-169 | |
14 14RT |
0 | Pending |
| Paraschiv (2008) | NRTI resistance mutations in subtype F1 strains isolated from heavily treated adolescents in Romania | Unpublished (2007) | 0 | |
327 327RT |
0 | Pending |
| Paraschiv (2009) | Nucleoside reverse transcriptase inhibitor resistance mutations in subtype F1 strains isolated from heavily treated adolescents in Romania | Int. J. Infect. Dis. 13 (1), 81-89 (2009) | 1e-164 | |
8 8RT |
0 | Pending |
| Paraschiv (2010) | Diversity of HIV-1 subtype C strains isolated in Romania | Infect. Genet. Evol. (2010) In press | 1e-179 | |
57 3PR 57RT |
0 | Pending |
| Paraskevis (2000) | MOLECULAR characterization of a recombinant HIV type 1 isolate (A/G/E/?): unidentified regions may be derived from parental subtype E sequences | AIDS Res. Hum. Retroviruses 16 (9), 845-855 (2000) | 1e-160 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Paraskevis (2001) | MOLECULAR characterization of a complex, recombinant human immunodeficiency virus type 1 (HIV-1) isolate (A/G/J/K/?): evidence to support the existence of a novel HIV-1 subtype | J. Gen. Virol. 82 (Pt 10), 2509-2514 (2001) | 1e-158 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Paraskevis (2005) | PREVALENCE of resistance-associated mutations in newly diagnosed HIV-1 patients in Greece | Virus Res. 112 (1-2), 115-122 (2005) | 1e-123 | 58 58RT |
59 1PR 58RT |
98 | HIVDB |
| Paraskevis (2007) | INCREASING Prevalence of HIV-1 Subtype A in Greece: Estimating Epidemic History and Origin | J. Infect. Dis. 196 (8), 1167-1176 (2007) | 0 | |
151 74PR 77RT |
0 | Pending |
| Paraskevis (2007) | Increasing prevalence of HIV-1 subtype A in Greece: estimating epidemic history and origin | J. Infect. Dis. 196 (8), 1167-1176 (2007) | 4e-49 | |
26 26PR |
0 | Pending |
| Parboosing (2011) | Resistance to antiretroviral drugs in newly diagnosed, young treatment-naive HIV-positive pregnant women in the province of KwaZulu-Natal, South Africa | J. Med. Virol. 83 (9), 1508-1513 (2011) | 0 | 56 56PR 56RT |
56 11PR 56RT |
100 | HIVDB |
| Parczewski (2010) | Characteristics of HIV-1 non-B subtype infections in Northwest Poland | J. Med. Virol. 82 (8), 1306-1313 (2010) | 0 | |
20 3PR 20RT |
0 | Pending |
| Paredes (2011) | A376S in the connection subdomain of HIV-1 reverse transcriptase confers increased risk of virological failure to nevirapine therapy | J. Infect. Dis. (2011) In press | 0 | |
204 46PR 193RT |
0 | Pending |
| Parera (2003) | LACK of Evidence for Protease Evolution in HIV-1-Infected Patients after 2 Years of Successful Highly Active Antiretroviral Therapy | J. Infect. Dis. 189 (8), 1444-1451 (2004) | 3e-53 | |
288 288PR |
0 | Evolution/quasispecies study |
| Parham (2011) | High Prevalence of Drug Resistance in HIV-1 Infected Children Born in Honduras and Belize 2001 to 2004 | AIDS Res. Hum. Retroviruses (2011) In press | 1e-150 | |
61 53PR 54RT |
0 | Pending |
| Pariente (2004) | LONG-TERM suppression of plasma viremia with highly active antiretroviral therapy despite virus evolution and very limited selection of drug-resistant genotypes | J. Med. Virol. 73 (3), 350-361 (2004) | 0 | |
175 175PR 175RT |
0 | Pending |
| Parikh (2006) | ANTAGONISM between the HIV-1 Reverse-Transcriptase Mutation K65R and Thymidine-Analogue Mutations at the Genomic Level | J. Infect. Dis. 194 (5), 651-660 (2006) | 1e-174 | |
320 320RT |
0 | Evolution/quasispecies study |
| Park (1998) | MUTATIONS in both gp120 and gp41 are responsible for the broad neutralization resistance of variant human immunodeficiency virus type 1 MN to antibodies directed at V3 and non-V3 epitopes | J. Virol. 72 (9), 7099-7107 (1998) | 1e-163 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Park (2003) | GENOTYPIC Resistance of Antiretroviral Drugs among Drug-Naive HIV Type 1 Patients with the Background of Long-Term Access-Easy Zidovudine Therapy | AIDS Res. Hum. Retroviruses 19 (11), 1039-1043 (2003) | 1e-126 | 86 39PR 47RT |
86 39PR 47RT |
100 | HIVDB |
| Parker (2002) | RESITANCE prevelance in HIV naive patients | Unpublished | 0 | 121 120PR 108RT 2IN |
121 120PR 108RT 2IN |
100 | HIVDB |
| Parker (2003) | DETECTION of resistance mutations in HIV-infected individuals who have discontinued antiretroviral therapy | Unpublished | 1e-123 | |
78 39PR 39RT |
0 | Evolution/quasispecies study |
| Parker (2004) | PREVALENCE of drug resistant and non-clade B HIV-1 in antiretroviral-naive individuals in New York State | Unpublished | 1e-123 | 21 1PR 20RT |
22 2PR 20RT |
95 | Case report(s) / study subset |
| Parkin (2000) | LOSS of antiretroviral drug susceptibility at low viral load during early virological failure in treatment-experienced patients | Unpublished | 1e-126 | 50 50PR 50RT |
51 51PR 51RT |
98 | HIVDB |
| Parkin (2006) | THE K101P and K103R/V179D Mutations in Human Immunodeficiency Virus Type 1 Reverse Transcriptase Confer Resistance to Nonnucleoside Reverse Transcriptase Inhibitors | Antimicrob. Agents Chemother. 50 (1), 351-354 (2006) | 1e-172 | 76 76RT |
76 76RT |
100 | HIVDB |
| Parreira (2006) | GENETIC characterization of human immunodeficiency virus type 1 from Beira, Mozambique | Microbes Infect. 8 (9-10), 2442-2451 (2006) | 1e-141 | |
42 18PR 42RT |
0 | Pending |
| Parry (2009) | Gag determinants of fitness and drug susceptibility in protease inhibitor-resistant human immunodeficiency virus type 1 | J. Virol. 83 (18), 9094-9101 (2009) | 0 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Pasquier (2001) | HIV-1 subtyping using phylogenetic analysis of pol gene sequences | J. Virol. Methods 94 (1-2), 45-54 (2001) | 1e-127 | 84 33PR 51RT |
84 33PR 51RT |
100 | HIVDB |
| Passaes (2009) | Near full-length genome characterization of HIV type 1 unique BC recombinant forms from Southern Brazil | AIDS Res. Hum. Retroviruses 25 (12), 1339-1344 (20 | 0 | 4 4PR 4RT 4IN |
4 4RT 4IN |
100 | HIVDB |
| Passaes (2010) | Lack of primary mutations associated with integrase inhibitors among HIV-1 subtypes B, C, and F circulating in Brazil | J. Acquir. Immune Defic. Syndr. 51 (1), 7-12 (2009 | 1e-167 | 105 105IN |
105 105IN |
100 | HIVDB |
| Patil (2011) | Emergence of drug resistance amongst human immunodeficiency virus type 1 infected individuals at the end of 12 months of first line ART initiation in India | Unpublished | 0 | |
13 2PR 12RT |
0 | Unpublished |
| Peeters (1999) | CHARACTERIZATION of a highly replicative intergroup M/O human immunodeficiency virus type 1 recombinant isolated from a Cameroonian patient | J. Virol. 73 (9), 7368-7375 (1999) | 4e-81 | 1 1PR 1RT 1IN |
1 1PR 1RT |
100 | HIVDB |
| Peeters (2002) | RISK to human health from a plethora of simian immunodeficiency viruses in primate bushmeat | Emerging Infect. Dis. 8 (5), 451-457 (2002) | 1e-75 | |
21 21IN |
0 | Pending |
| Pereira-Vaz (2008) | HIGH prevalence of the protease codon 35 amino acid insertion in treatment-naive HIV-1 subtype C infected individuals in the central region of Portugal | Unpublished | 0 | |
7 7RT |
0 | Case report(s) / study subset |
| Pereira-Vaz (2010) | Molecular epidemiology of HIV-1 in the central region of Portugal | Unpublished | 0 | |
146 34PR 146RT |
0 | Unpublished |
| Perez Bercoff (2010) | Polymorphisms of HIV-2 integrase and selection of resistance to raltegravir | Retrovirology 7 (1), 98 (2010) | 0 | |
62 8RT 54IN |
0 | Pending |
| Perez (2001) | HUMAN immunodeficiency virus type 1 protease genotype predicts immune and viral responses to combination therapy with protease inhibitors (PIs) in PI-naive patients | J. Infect. Dis. 183 (4), 579-588 (2001) | 1e-130 | 45 26PR 19RT |
45 26PR 19RT |
100 | HIVDB |
| Perez (2006) | HIV Type 1 Molecular Epidemiology in Cuba: High Genetic Diversity, Frequent Mosaicism, and Recent Expansion of BG Intersubtype Recombinant Forms | AIDS Res. Hum. Retroviruses 22 (8), 724-733 (2006) | 0 | 424 424PR 424RT |
424 332PR 423RT |
100 | HIVDB |
| Perez (2011) | Drug resistance in HIV Cuban children | Unpublished | 0 | |
22 3PR 22RT |
0 | Unpublished |
| Perez-Romero (2010) | Assay design for genotyping HIV-patients with viral loads below 1,000 copies/mL | Unpublished | 1e-143 | |
5 5PR 1RT |
0 | Unpublished |
| Perno (2001) | IMPACT of mutations conferring reduced susceptibility to lamivudine (3TC) on the response to antiretroviral therapy | Unpublished | 1e-130 | 203 203PR 203RT |
203 203PR 203RT |
100 | HIVDB |
| Persaud (2000) | A stable latent reservoir for HIV-1 in resting CD4(+) T lymphocytes in infected children | J. Clin. Invest. 105 (7), 995-1003 (2000) | 1e-130 | |
26 21PR 23RT |
0 | Evolution/quasispecies study |
| Persaud (2004) | CONTINUED Production of Drug-Sensitive Human Immunodeficiency Virus Type 1 in Children on Combination Antiretroviral Therapy Who Have Undetectable Viral Loads | J. Virol. 78 (2), 968-979 (2004) | 3e-53 | |
116 116PR |
0 | Evolution/quasispecies study |
| Persaud (2007) | SLOW human immunodeficiency virus type 1 evolution in viral reservoirs in infants treated with effective antiretroviral therapy | AIDS Res. Hum. Retroviruses 23 (3), 381-390 (2007) | 6e-53 | |
101 101PR |
0 | Evolution/quasispecies study |
| Petch (2005) | GENOTYPIC Analysis of the Protease and Reverse Transcriptase of HIV Type 1 Subtype C Isolates from Antiretroviral Drug-Naive Adults in Malawi | AIDS Res. Hum. Retroviruses 21 (9), 799-805 (2005) | 1e-119 | 39 18PR 21RT |
39 18PR 21RT |
100 | HIVDB |
| Petroni (2003) | B/F intersubtype recombinants of HIV-1 in Argentina: impact on genotypic patterns associated with antiretroviral drug resistance | Unpublished | 0 | |
316 316PR 316RT |
0 | ARV Rx and/or other data are N/A |
| Petroni (2006) | UPDATE on Primary HIV-1 Resistance in Argentina: Emergence of Mutations Conferring High-Level Resistance to Nonnucleoside Reverse Transcriptase Inhibitors in Drug-Naive Patients | J. Acquir. Immune Defic. Syndr. 42 (4), 506-510 (2006) | 0 | 52 52PR 52RT |
52 42PR 52RT |
100 | HIVDB |
| Petropoulos (2002) | APPENDIX 2: Retroviral taxonomy, protein structure, sequences, and genetic maps | (in) Coffin,J.M. (Ed.); RETROVIRUSES: 757; Cold Spring Harbo | 1e-163 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Pfafferott (2009) | Adaptation of HIV-1 to HLA I | Unpublished | 0 | |
125 101RT 85IN |
0 | Unpublished |
| Phan (2007) | SEQUENCE variation in pol gene of HIV-1 isolated from Bach Mai hospital in Hanoi | Unpublished | 0 | |
1 1RT |
0 | Case report(s) / study subset |
| Phan (2011) | Sequence analysis of protease encoding gene of HIV type isolated in Vietnam | Unpublished | 6e-50 | |
4 4PR |
0 | Unpublished |
| Phan (2010) | Characterization of HIV Type 1 Genotypes and Drug Resistance Mutations Among Drug-Naive HIV Type 1-Infected Patients in Northern Vietnam | AIDS Res. Hum. Retroviruses 26 (2), 233-235 (2010) | 2e-50 | 105 105PR 86RT |
105 105PR |
100 | HIVDB |
| Philpott (2004) | HUMAN immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: compartmentalization and intrapatient recombination | J. Virol. 79 (1), 353-363 (2005) | 0 | |
20 20PR 20RT 20IN |
0 | Evolution/quasispecies study |
| Picchio (2001) | ALTERED viral fitness of HIV-1 following failure of protease inhibitor-based therapy | J. Acquir. Immune Defic. Syndr. 25 (4), 289-295 (2000) | 1e-121 | |
5 5PR 5RT |
0 | Case report(s) / study subset |
| Pieniazek (1991) | PHYLOGENETIC relationships among Human Immunodeficiency Virus (HIV) isolates from single and mixed HIV-1/HIV-2 infections | Unpublished (1993) | 1e-126 | 4 4PR |
16 16PR |
25 | HIVDB |
| Pieniazek (1998) | INTRODUCTION of HIV-2 and multiple HIV-1 subtypes to Lebanon | Emerging Infect. Dis. 4 (4), 649-656 (1998) | 1e-126 | 26 26PR |
26 26PR |
100 | HIVDB |
| Pieniazek (1999) | PRESENCE of human immunodeficiency virus type 2 subtypes A and B in Abidjan, Cote d' Ivoire | Unpublished | 2e-24 | |
31 31PR |
0 | Pending |
| Pieniazek (2003) | HIV-2 protease sequences of subtypes A and B harbor multiple mutations associated with protease inhibitor resistance in HIV-1 | AIDS 18 (3), 495-502 (2004) | 6e-25 | 27 27PR |
27 27PR |
100 | HIVDB |
| Pilcher (1999) | GENOTYPIC resistance and the treatment of HIV-1 infection in Espirito Santo, Brazil | J. Infect. Dis. 179 (5), 1259-1263 (1999) | 1e-128 | |
72 72PR 72RT |
0 | Sequence quality |
| Pillay (2002) | HIV-1 subtype C reverse transcriptase sequences from drug-naive pregnant women in South Africa | AIDS Res. Hum. Retroviruses 18 (8), 605-610 (2002) | 2e-67 | 37 37RT |
37 37RT |
100 | HIVDB |
| Pillay (2004) | EMERGENCE of resistance mutations in children treated with ddI plus d4T after treatment to prevent mother-to-child transmission | Unpublished | 1e-174 | 40 40RT |
46 46RT |
86 | HIVDB |
| Pillay (2004) | POLYMORPHISMS in HIV Subtype C protease encode secondary drug resistance mutations | Unpublished | 1e-50 | |
31 31PR |
0 | Pending |
| Pillay (2005) | HIV Type 1 Subtype C Drug Resistance among Pediatric and Adult South African Patients Failing Antiretroviral Therapy | AIDS Res. Hum. Retroviruses 24 (11), 1449-1454 (2008) | 0 | 68 68PR 68RT |
68 61PR 68RT |
100 | HIVDB |
| Pilon (2011) | Transmission Patterns of HIV and Hepatitis C Virus among Networks of People Who Inject Drugs Recruited through Respondent-Driven Sampling | Unpublished | 1e-168 | |
27 27RT |
0 | Unpublished |
| Pires (2004) | PREVALENCE of Human Immunodeficiency Virus Drug Resistance Mutations and Subtypes in Drug-Naive, Infected Individuals in the Army Health Service of Rio de Janeiro, Brazil | J. Clin. Microbiol. 42 (1), 426-430 (2004) | 1e-114 | 98 49PR 49RT |
99 49PR 50RT |
98 | HIVDB |
| Piyasirisilp (2000) | A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant | J. Virol. 74 (23), 11286-11295 (2000) | 1e-165 | 5 5PR 5RT 5IN |
5 5PR 5RT 5IN |
100 | HIVDB |
| Plantier (2009) | A new immunodeficiency virus derived from gorillas | Nat. Med. (2009) In press | 0 | 1 1PR 1RT 1IN |
2 2RT 2IN |
50 | HIVDB |
| Poddubskaya (2009) | The sequence of fragment of HIV-1 pol gene from Russia patient | Unpublished | 0 | |
46 46RT |
0 | Unpublished |
| Pollakis (2003) | RECOMBINATION of HIV Type 1C (C'/C') in Ethiopia: Possible Link of EthHIV-1C' to Subtype C Sequences from the High-Prevalence Epidemics in India and Southern Africa | AIDS Res. Hum. Retroviruses 19 (11), 999-1008 (2003) | 1e-90 | 19 16PR 18RT |
19 16PR 18RT |
100 | HIVDB |
| Powell (2007) | CIRCULATING Recombinant Form (CRF) 37_cpx: An Old Strain in Cameroon Composed of Diverse, Genetically Distant Lineages of Subtypes A and G | AIDS Res. Hum. Retroviruses 23 (7), 923-933 (2007) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Powell (2007) | QUASISPECIES analysis of novel HIV-1 recombinants of subtypes A and G reveals no similarity to the mosaic structure of CRF02_AG | J. Med. Virol. 79 (9), 1270-1285 (2007) | 0 | 3 3RT |
3 3RT |
100 | Case report(s) / study subset |
| Powell (2007) | IDENTIFICATION of a Novel Circulating Recombinant Form (CRF) 36_cpx in Cameroon That Combines Two CRFs (01_AE and 02_AG) with Ancestral Lineages of Subtypes A and G | AIDS Res. Hum. Retroviruses 23 (8), 1008-1019 (2007) | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Powell (2009) | Longitudinal quasispecies analysis of viral variants in HIV type 1 dually infected individuals highlights the importance of sequence identity in viral recombination | AIDS Res. Hum. Retroviruses 26 (3), 253-264 (2010) | 0 | |
560 185RT 375IN |
0 | Evolution/quasispecies study |
| Praparattanapan (2011) | Current Molecular Epidemiology and Recombination of HIV Type 1 Subtypes in Northern Thailand | AIDS Res. Hum. Retroviruses (2011) In press | 1e-148 | |
232 231PR 10RT |
0 | Pending |
| Prasetyo (2011) | Direct Submission | Submitted (20-AUG-2010) Department of Microbiology | 8e-56 | |
13 13IN |
0 | Unpublished |
| Prejdova (2003) | RESISTANCE development in HIV positive patients treated by protease inhibitors: correlation of the genotype and disease progression | Unpublished | 6e-52 | |
23 23PR |
0 | ARV Rx and/or other data are N/A |
| Punzi (2004) | HIV infection and protease genetic diversity in a rural area of the Southern Central African Republic | J. Med. Virol. 77 (4), 457-459 (2005) | 1e-147 | 12 12PR 2RT |
12 12PR 2RT |
100 | HIVDB |
| Pushkarsky (2003) | DIRECT Submission | Submitted (28-FEB-2003) Microbiology and Tropical Medicine, | 0 | |
2 1RT 1IN |
0 | Case report(s) / study subset |
| Qari (2002) | A rapid phenotypic assay for detecting multiple nucleoside analog reverse transcriptase inhibitor-resistant human immunodeficiency virus type 1 in plasma | Antivir. Ther. (Lond.) (2002) In press | 1e-116 | |
5 5PR 5RT |
0 | Case report(s) / study subset |
| Qiu (2005) | CHARACTERIZATION of Five Nearly Full-Length Genomes of Early HIV Type 1 Strains in Ruili City: Implications for the Genesis of CRF07_BC and CRF08_BC Circulating in China | AIDS Res. Hum. Retroviruses 21 (12), 1051-1056 (2005) | 0 | 5 5PR 5RT 5IN |
5 2PR 5RT 5IN |
100 | HIVDB |
| Quan (2003) | DRUG resistance profiles of recombinant reverse transcriptases from human immunodeficiency virus type 1 subtypes A/E, B, and C | AIDS Res. Hum. Retroviruses 19 (9), 743-753 (2003) | 2e-61 | |
3 3RT |
0 | Laboratory/experimental isolate |
| Quarleri (2004) | DIRECT Submission | Submitted (01-DEC-2003) National Reference Center for AIDS-M | 0 | |
16 16PR 16RT |
0 | ARV Rx and/or other data are N/A |
| Quesnel-Vallieres (2011) | Novel HIV-1 Recombinant Forms in Antenatal Cohort, Montreal, Quebec, Canada | Emerging Infect. Dis. 17 (2), 271-274 (2011) | 0 | |
4 4RT 4IN |
0 | Pending |
| Quinones-Mateu (1995) | MOLECULAR characterization of human immunodeficiency virus type 1 isolates from Venezuela | AIDS Res. Hum. Retroviruses 11 (5), 605-616 (1995) | 5e-92 | 8 8RT |
8 8RT |
100 | HIVDB |
| Quinones-Mateu (1997) | CHARACTERIZATION of the reverse transcriptase of a human immunodeficiency virus type 1 group O isolate | Virology 236 (2), 364-373 (1997) | 7e-08 | 1 1RT |
1 1RT |
100 | HIVDB |
| Quinones-Mateu (1998) | ANALYSIS of pol gene heterogeneity, viral quasispecies, and drug resistance in individuals infected with group O strains of human immunodeficiency virus type 1 | J. Virol. 72 (11), 9002-9015 (1998) | 1e-21 | 66 66RT |
88 88RT |
75 | HIVDB |
| Ragonnet-Cronin (2010) | Longitudinal Phylogenetic Surveillance Identifies Distinct Patterns of Cluster Dynamics | J. Acquir. Immune Defic. Syndr. (2010) In press | 1e-179 | 358 358PR 358RT |
876 517PR 849RT |
40 | HIVDB |
| Rainwater (2005) | NO Evidence for Rapid Subtype C Spread within an Epidemic in Which Multiple Subtypes and Intersubtype Recombinants Circulate | AIDS Res. Hum. Retroviruses 21 (12), 1060-1065 (2005) | 1e-166 | 22 22IN |
23 23IN |
95 | HIVDB |
| Rajesh (2009) | Antiretroviral drug-resistant mutations at baseline and at time of failure of antiretroviral therapy in HIV type 1-coinfected TB patients | AIDS Res. Hum. Retroviruses 25 (11), 1179-1185 (20 | 1e-149 | 57 10PR 47RT |
57 10PR 47RT |
100 | HIVDB |
| Ramirez de Arellano (2004) | GENETIC Analysis of Regulatory, Promoter, and TAR Regions of LTR Sequences Belonging to HIV Type 1 Non-B Subtypes | AIDS Res. Hum. Retroviruses 21 (11), 949-954 (2005) | 1e-131 | |
15 15PR 11RT |
0 | Case report(s) / study subset |
| Ramos (1999) | DUAL and recombinant infections: an integral part of the HIV-1 epidemic in Brazil | Emerging Infect. Dis. 5 (1), 65-74 (1999) | 1e-124 | 24 24PR |
25 25PR |
96 | HIVDB |
| Ramos (2002) | NEW HIV Type 1 CRF01_AE/B Recombinants Displaying Unique Distribution of Breakpoints from Incident Infections among Injecting Drug Users in Thailand | AIDS Res. Hum. Retroviruses 19 (8), 667-674 (2003) | 1e-164 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Rangel (2009) | Deletion, insertion and stop codon mutations in Vif genes of HIV-1 infecting long term progressor patients | Unpublished | 2e-21 | |
29 29IN |
0 | Gene fragment(s) |
| Rangel (2009) | HIV diversity in Venezuela: predominance of HIV type 1 subtype B and genomic characterization of non-B variants | AIDS Res. Hum. Retroviruses 25 (3), 347-350 (2009) | 0 | |
163 72PR 157RT |
0 | Pending |
| Rangel (2009) | Deletion, insertion and stop codon mutations in vif genes of HIV-1 infecting slow progressor patients | J Infect Dev Ctries 3 (7), 531-538 (2009) | 2e-21 | |
7 7IN |
0 | Pending |
| Rangel (2010) | Absence of primary integrase resistance mutations in HIV type 1-infected patients in Venezuela | AIDS Res. Hum. Retroviruses 26 (8), 923-926 (2010) | 0 | 103 36PR 36RT 67IN |
103 19PR 36RT 67IN |
100 | HIVDB |
| Rangel (2011) | HIV diversity in Venezuela: predominance of HIV-1 subtype B and genomic characterization of non B viruses | Unpublished | 0 | |
168 74PR 164RT |
0 | Unpublished |
| Ravuri (2006) | PRIMARY Drug Resistance Studies by Genotypic Analysis in HIV-1 Indian Subtype C-Infected Individuals | Unpublished | 0 | 50 50RT |
50 50RT |
100 | HIVDB |
| Razafindratsimandresy (2006) | HIGH HIV Type 1 Subtype Diversity and Few Drug Resistance Mutations among Seropositive People Detected during the 2005 Second Generation HIV Surveillance in Madagascar | AIDS Res. Hum. Retroviruses 22 (6), 595-597 (2006) | 1e-145 | 46 18PR 28RT |
46 18PR 28RT |
100 | HIVDB |
| Razafindratsimandresy (2007) | HIV Type 1 Diversity in the Seychelles | AIDS Res. Hum. Retroviruses 23 (6), 761-763 (2007) | 1e-144 | 61 22PR 39RT |
61 22PR 39RT |
100 | HIVDB |
| Recordon-Pinson (2010) | Evaluation of the genotypic prediction of HIV-1 coreceptor use versus a phenotypic assay and correlation with the virological response to maraviroc: the ANRS GenoTropism study | Antimicrob. Agents Chemother. 54 (8), 3335-3340 (2 | 0 | |
31 16PR 18RT |
0 | Pending |
| Reed (2005) | HIGH prevalence of a new SIV in cercopithecus erythrotis from the island of Bioko, Equatorial Guinea : molecular characterization of SIVery from tissue samples | Unpublished | 1e-76 | 11 11IN |
11 11IN |
100 | HIVDB |
| Reeve (2009) | Reduced genetic diversity in lymphoid and central nervous system tissues and selection-induced tissue-specific compartmentalization of neuropathogenic SIVsmmFGb during acute infection | AIDS Res. Hum. Retroviruses 25 (6), 583-601 (2009) | 1e-102 | |
1238 1238IN |
0 | Evolution/quasispecies study |
| Reid (2005) | NATURAL resistance of human immunodeficiency virus type 2 to zidovudine | Virology 336 (2), 251-264 (2005) | 0 | |
10 10RT |
0 | Pending |
| Reinis (2002) | HUMAN immunodeficiency virus 1 strains resistant to nucleoside inhibitors of reverse transcriptase in isolates from the Czech Republic as monitored by line probe assay and nucleotide sequencing | Acta Virol. 45 (5-6), 279-286 (2001) | 4e-96 | |
32 32RT |
0 | Pending |
| Reinis (2006) | GENOMIC Analysis of HIV Type 1 Strains Derived from a Mother and Child Pair of Long-Term Nonprogressors | AIDS Res. Hum. Retroviruses 23 (2), 309-315 (2007) | 0 | |
4 4PR 4RT 4IN |
0 | Case report(s) / study subset |
| Reinke (2002) | NATURAL selection results in conservation of HIV-1 integrase activity despite sequence variability | AIDS 15 (7), 823-830 (2001) | 1e-164 | 4 4IN |
4 4IN |
100 | HIVDB |
| Reinke (2002) | INHIBITION of human immunodeficiency virus type 1 isolates by the integrase inhibitor L-731,988, a diketo Acid | Antimicrob. Agents Chemother. 46 (10), 3301-3303 (2002) | 1e-166 | |
6 6IN |
0 | Pending |
| Reitz (1995) | VIRAL variability and serum antibody response in a laboratory worker infected with HIV type 1 (HTLV type IIIB) | AIDS Res. Hum. Retroviruses 10 (9), 1143-1155 (1994) | 1e-164 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Resch (2004) | EVOLUTION of human immunodeficiency virus type 1 protease genotypes and phenotypes in vivo under selective pressure of the protease inhibitor ritonavir | J. Virol. 79 (16), 10638-10649 (2005) | 3e-53 | |
458 458PR 15RT |
0 | Evolution/quasispecies study |
| Reuman (2009) | Panel of prototypical raltegravir-resistant infectious molecular clones in a novel integrase-deleted cloning vector | Antimicrob. Agents Chemother. 54 (2), 934-936 (201 | 1e-166 | 16 16IN |
16 16IN |
100 | HIVDB |
| Rey-Cuille (1994) | HIV-2 EHO isolate has a divergent envelope gene and induces single cell killing by apoptosis | Virology 202 (1), 471-476 (1994) | 1e-101 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Rhee (2005) | HIV-1 Protease and Reverse-Transcriptase Mutations: Correlations with Antiretroviral Therapy in Subtype B Isolates and Implications for Drug-Resistance Surveillance | J. Infect. Dis. 192 (3), 456-465 (2005) | 0 | 3193 1247PR 1946RT |
3194 1248PR 1946RT |
99 | HIVDB |
| Rhee (2005) | HIV-1 Protease and reverse-transcriptase mutations: correlations with antiretroviral therapy in subtype B isolates and implications for drug-resistance surveillance | J. Infect. Dis. 192 (3), 456-465 (2005) | 2e-48 | 5 5PR |
5 5PR |
100 | HIVDB |
| Rhee (2007) | PREDICTORS of Human Immunodeficiency Virus Type 1 Drug Resistance | Unpublished | 0 | 6 2PR 4RT |
143 49PR 94RT |
4 | HIVDB |
| Rhee (2009) | Predictive Value of HIV-1 Genotypic Resistance Test Interpretation Algorithms | J. Infect. Dis. 200 (3), 453-463 (2009) | 0 | 369 157PR 212RT |
369 157PR 212RT |
100 | HIVDB |
| Rhodes (2001) | CHARACTERIZATION of three nef-defective HIV-1 strains associated with long term nonprogression | Unpublished | 0.02 | |
37 37IN |
0 | Gene fragment(s) |
| Richard (2004) | HIGH prevalence of antiretroviral resistance in treated Ugandans infected with non-subtype B human immunodeficiency virus type 1 | AIDS Res. Hum. Retroviruses 20 (4), 355-364 (2004) | 1e-116 | 90 90RT |
90 90RT |
100 | HIVDB |
| Rios (2007) | ANTIRETROVIRAL drug resistance and phylogenetic diversity of HIV-1 in Chile | J. Med. Virol. 79 (6), 647-656 (2007) | 1e-163 | 157 157PR 157RT |
157 120PR 157RT |
100 | HIVDB |
| Riva (2002) | EVALUATION of two commercial kits for testing genotypic drug-resistance on a panel of human immunodeficiency virus type 1 subtypes A-J | Unpublished | 1e-118 | |
22 22PR 22RT |
0 | ARV Rx and/or other data are N/A |
| Riva (2008) | IDENTIFICATION of a Possible Ancestor of the Subtype A1 HIV Type 1 Variant Circulating in the Former Soviet Union | AIDS Res. Hum. Retroviruses 24 (10), 1319-1325 (2008) | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Rivera-Morales (2010) | Genotype analysis of protease and reverse transcriptase genes on children with HIV-1 under structured treatment interruptions | Unpublished | 0 | |
4 2PR 2RT |
0 | Unpublished |
| Rivera-Morales (2011) | Drug Resistance Mutations During Structured Interruptions of HAART in HIV-1 Infected Children | Unpublished | 0 | |
7 4PR 3RT |
0 | Case report(s) / study subset |
| Rodenburg (2001) | NEAR full-length clones and reference sequences for subtype C isolates of HIV type 1 from three different continents | AIDS Res. Hum. Retroviruses 17 (2), 161-168 (2001) | 1e-165 | 13 13PR 13RT 13IN |
13 13PR 13RT 13IN |
100 | HIVDB |
| Rodes (2000) | EMERGENCE of drug resistance mutations in human immunodeficiency virus type 2-infected subjects undergoing antiretroviral therapy | J. Clin. Microbiol. 38 (4), 1370-1374 (2000) | 4e-19 | 13 4PR 12RT |
13 1PR 12RT |
100 | HIVDB |
| Rodes (2002) | RAPID Assessment of Phenotypic Resistance to Protease Inhibitors in Human Immunodeficiency Virus Type 1 Group O | J. Clin. Microbiol. 40 (11), 4313-4316 (2002) | 1.6 | 5 5PR |
5 5PR |
100 | HIVDB |
| Rodes (2004) | TREATMENT Response and Drug Resistance in Patients Infected with HIV Type 1 Group O Viruses | AIDS Res. Hum. Retroviruses 21 (7), 602-607 (2005) | 0 | 20 10PR 10RT |
22 10PR 12RT |
90 | HIVDB |
| Rodrigues (2003) | ARV Resistance Mutations in Non-B clades HIV-1 | Unpublished | 0 | 175 89PR 86RT |
301 153PR 149RT |
58 | HIVDB |
| Rodrigues (2005) | LOW prevalence of primary antiretroviral resistance mutations and predominance of HIV-1 clade C at polymerase gene in newly diagnosed individuals from south Brazil | Virus Res. 116 (1-2), 201-207 (2006) | 1e-118 | 45 44PR 1RT |
45 44PR 1RT |
100 | HIVDB |
| Rodrigues (2008) | MOLECULAR characterization and predictors of HIV infection among VCT users of Curitiba, Brazil | Unpublished | 0 | 37 37PR 37RT |
37 31PR 12RT |
100 | HIVDB |
| Rodrigues (2010) | Young pregnant women living with HIV/AIDS in Criciuma, Southern Brazil, are infected almost exclusively with HIV type 1 clade C | AIDS Res. Hum. Retroviruses 26 (3), 351-357 (2010) | 4e-50 | 9 9PR 9RT |
9 9PR |
100 | HIVDB |
| Rodrigues (2010) | Direct Submission | Submitted (23-MAR-2010) Servico de Virologia, Inst | 0 | |
776 169PR 754RT |
0 | Pending |
| Rodrigues (2010) | Brazilian HIV-1 Surveillance | Unpublished | 3e-49 | |
1 1PR |
0 | Unpublished |
| Rodrigues (2010) | Sao Paulo HIV Salvage Workgroup | Unpublished | 1e-150 | |
2 1PR 1RT |
0 | Unpublished |
| Rodriguez (2005) | CONSTRUCTION and characterization of an infectious molecular clone of HIV-1 subtype A of Indian origin | Virology 345 (2), 328-336 (2006) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Roege (2003) | K65R with and without S68: a new resistance profile in vivo detected in most patients failing abacavir, didanosine and stavudine | Antivir. Ther. (Lond.) 8 (2), 173-182 (2003) | 3e-97 | 20 20RT |
20 20RT |
100 | HIVDB |
| Roge (2003) | DRUG resistance mutations and outcome of second-line treatment in patients with first-line protease inhibitor failure on nelfinavir-containing HAART | HIV Med. 4 (1), 38-47 (2003) | 1e-131 | |
95 48PR 47RT |
0 | ARV Rx and/or other data are N/A |
| Rolland (2011) | Direct Submission | Submitted (08-FEB-2011) Microbiology, University o | 0 | |
632 391PR 441RT 632IN |
0 | Pending |
| Romano (2000) | DETECTION of genotypically drug-resistant HIV-1 variants and non-B subtypes in recently infected antiretroviral-naive adults in Italy | AIDS 14 (14), 2204-2206 (2000) | 1e-132 | 232 116PR 116RT |
232 116PR 116RT |
100 | HIVDB |
| Romano (2002) | PROLONGED low capability to reinfect peripheral blood lymphocytes by circulating protease inhibitor-resistant HIV-1 in a patient under antiretroviral therapy | Unpublished | 1e-123 | |
80 40PR 40RT |
0 | ARV Rx and/or other data are N/A |
| Romano (2002) | TREATMENT with lopinavir/ritonavir in heavily pretreated subjects failing multiple antiretroviral regimens in clinical practice | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 30, 533-535 | 1e-124 | 80 80PR 80RT |
80 80PR 80RT |
100 | HIVDB |
| Roques (2000) | PHYLOGENETIC characteristics of three new HIV-1 N strains and implications for the origin of group N | AIDS 18 (10), 1371-1381 (2004) | 0 | 3 3PR 3RT 3IN |
8 3PR 3RT 6IN |
37 | HIVDB |
| Ross (2001) | THYMIDINE analog and multinucleoside resistance mutations are associated with decreased phenotypic susceptibility to stavudine in HIV type 1 isolated from zidovudine-naive patients experiencing viremia on stavudine-containing regimens | AIDS Res. Hum. Retroviruses 17 (12), 1107-1115 (2001) | 1e-130 | |
86 70PR 86RT |
0 | ARV Rx and/or other data are N/A |
| Rousseau (2003) | LARGE-SCALE amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes | J. Virol. Methods 136 (1-2), 118-125 (2006) | 0 | 272 256PR 257RT 270IN |
273 232PR 272RT 270IN |
99 | HIVDB |
| Rousseau (2008) | HLA Class-I Driven Evolution of Human Immunodeficiency Virus Type 1 Subtype C Proteome: Immune Escape and Viral Load | Unpublished | 0 | |
148 148RT |
0 | Pending |
| Rousseau (2000) | PATTERNS of resistance mutations to antiretroviral drugs in extensively pretreated HIV-1-infected patients with failure of highly active antiretroviral therapy | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 26, 36-43 ( | 1e-112 | 22 22PR 22RT |
22 22PR 22RT |
100 | HIVDB |
| Roye (2010) | Genotypic Characterization of HIV-1 in Jamaica | Unpublished | 0 | |
7 4PR 7RT 7IN |
0 | Unpublished |
| Ruchansky (2008) | IDENTIFICATION of a new HIV Type 1 Circulating Recombinant Form (CRF38_BF1) in Uruguay | AIDS Res. Hum. Retroviruses 25 (3), 351-356 (2009) | 0 | 4 4PR 4RT 4IN |
4 4RT 4IN |
100 | Case report(s) / study subset |
| Rud (1992) | INFECTIOUS molecular clones of SIVmac32H: Nef deletion controls ability to reisolate virus from rhesus macaques | (in) Brown,F., Chanock,R.M. and Ginsberg,H.S. (Eds.); VACCIN | 1e-99 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Rudicell (2010) | Impact of simian immunodeficiency virus infection on chimpanzee population dynamics | PLoS Pathog. 6 (9), e1001116 (2010) | 3e-86 | |
2 2IN |
0 | Pending |
| Rudicell (2011) | High Prevalence of Simian Immunodeficiency Virus Infection in a Community of Savanna Chimpanzees | J. Virol. (2011) In press | 0 | |
6 3RT 6IN |
0 | Pending |
| Ruelle (2007) | MODERATE antiretroviral efficacy and selection of resistance mutations in HIV-2: Analysis of the HIV-2 Belgium and Luxembourg database | Unpublished | 1e-149 | |
12 12RT |
0 | Pending |
| Ruff (2002) | PERSISTENCE of wild-type virus and lack of temporal structure in the latent reservoir for human immunodeficiency virus type 1 in pediatric patients with extensive antiretroviral exposure | J. Virol. 76 (18), 9481-9492 (2002) | 1e-130 | |
81 81PR 81RT |
0 | Evolution/quasispecies study |
| Rumyantseva (2009) | Molecular epidemiology of HIV-1 in Krasnoyarsk region, Russia | AIDS Res Hum Retroviruses. 2009 Sep;25(9):931-6. | 0 | |
80 4PR 80RT |
0 | Pending |
| Rusconi (2000) | SUSCEPTIBILITY to PNU-140690 (Tipranavir) of human immunodeficiency virus type 1 isolates derived from patients with multidrug resistance to other protease inhibitors | Antimicrob. Agents Chemother. 44 (5), 1328-1332 (2000) | 1e-113 | |
10 10PR |
0 | ARV Rx and/or other data are N/A |
| Rusconi (2002) | ACCUMULATION of drug-related mutations in HIV-1 genome and virus replicative capacity in multi-drug failure subjects | J. Antimicrob. Chemother. 49 (2), 427-429 (2002) | 1e-116 | |
17 8PR 9RT |
0 | ARV Rx and/or other data are N/A |
| Rusconi (2007) | DISCOVERY of a novel non-conventional (folding) protease inhibitor with in vitro activity against Human Immunodeficiency Virus type 1 | Unpublished | 1e-142 | |
1 1RT |
0 | Laboratory/experimental isolate |
| Rychert (2006) | HIV-1 Sequence Variation Occurs in CD4 Epitopes During Acute Infection | Unpublished | 1e-166 | |
14 14IN |
0 | Case report(s) / study subset |
| Sa Filho (2002) | MUTATIONS associated with drug resistance in a population of drug naive HIV-1 infected individuals | Unpublished | 1e-98 | 89 89RT |
90 90RT |
98 | HIVDB |
| Sa Filho (2004) | ANALYSIS of full-length human immunodeficiency virus type 1 genome reveals a variable spectrum of subtypes B and f recombinants in Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 21 (2), 145-151 (2005) | 0 | 6 6PR 6RT 6IN |
221 221PR 221RT 6IN |
2 | HIVDB |
| Sa Filho (2006) | IDENTIFICATION of Two HIV Type 1 Circulating Recombinant Forms in Brazil | AIDS Res. Hum. Retroviruses 22 (1), 1-13 (2006) | 0 | 10 10PR 10RT 10IN |
10 3PR 10RT 10IN |
100 | HIVDB |
| Sa-Filho (2003) | ANALYSIS of the protease sequences of HIV-1 infected individuals after Indinavir monotherapy | J. Clin. Virol. 28 (2), 186-202 (2003) | 1e-123 | 50 50PR |
50 50PR |
100 | HIVDB |
| Sa-Filho (2007) | CHARACTERIZATION of the full-length human immunodeficiency virus-1 genome from recently infected subjects in Brazil | AIDS Res. Hum. Retroviruses 23 (9), 1087-1094 (2007) | 0 | 12 12PR 12RT 12IN |
12 8PR 12RT 12IN |
100 | HIVDB |
| Sa-Filho (2009) | HIV-1 diversity from newly diagnosed patients in Santos Metropolitan Area/Brazil | AIDS Res Hum Retroviruses. 2009 Sep;25(9):925-9. | 1e-150 | 31 31PR 30RT |
31 20PR 20RT |
100 | HIVDB |
| Saad (2004) | HIV Type 1 Strains Common in Europe, Africa, and Asia Cocirculate in Yemen | AIDS Res. Hum. Retroviruses 21 (7), 644-648 (2005) | 0 | 19 19PR 19RT 6IN |
25 25PR 25RT 6IN |
76 | HIVDB |
| Saad (2005) | MOLECULAR Epidemiology of HIV Type 1 in Ukraine: Birthplace of an Epidemic | AIDS Res. Hum. Retroviruses 22 (8), 709-714 (2006) | 0 | 175 163PR 163RT 12IN |
175 172PR 175RT 12IN |
100 | HIVDB |
| Saad (2006) | GENETIC Forms of HIV Type 1 in the Former Soviet Union Dominate the Epidemic in Azerbaijan | AIDS Res. Hum. Retroviruses 22 (8), 796-800 (2006) | 1e-138 | 41 41PR 41RT |
41 41PR 41RT |
100 | HIVDB |
| Saah (2003) | TREATMENT with indinavir, efavirenz, and adefovir after failure of nelfinavir therapy | J. Infect. Dis. 187 (7), 1157-1162 (2003) | 1e-130 | 354 354PR 354RT |
354 354PR 354RT |
100 | HIVDB |
| Sagar (2005) | DIVERSITY in HIV-1 Envelope V1-V3 Sequences Early in Infection Reflects Sequence Diversity Throughout the HIV-1 Genome But Does Not Predict the Extent of Sequence Diversity During Chronic Infection | AIDS Res. Hum. Retroviruses 22 (5), 430-437 (2006) | 1e-155 | |
160 132PR 134RT |
0 | Evolution/quasispecies study |
| Sagoe (2007) | VARIABILITY of the human immunodeficiency virus type 1 polymerase gene from treatment naive patients in Accra, Ghana | J. Clin. Virol. 40 (2), 163-167 (2007) | 0 | 25 25PR 25RT |
25 1PR 25RT |
100 | HIVDB |
| SahBandar (2009) | Molecular epidemiology profile and emerging recombinant forms among HIV-1 infected subjects in Jakarta, Indonesia | Unpublished | 8e-51 | 1 1PR 1RT |
3 3PR |
33 | Case report(s) / study subset |
| Sahbandar (2009) | Current HIV type 1 molecular epidemiology profile and identification of unique recombinant forms in Jakarta, Indonesia | AIDS Res. Hum. Retroviruses 25 (7), 637-646 (2009) | 9e-50 | 1 1PR 1RT |
3 3PR |
33 | HIVDB |
| SahBandar (2010) | The Indonesian Variant of CRF33_01B: Near-Full Length Sequence Analysis | Unpublished | 0 | |
2 2RT 2IN |
0 | Pending |
| Sahu (2010) | Recovery of replication-competent residual HIV-1 from plasma of a patient receiving prolonged, suppressive highly active antiretroviral therapy | J. Virol. 84 (16), 8348-8352 (2010) | 0 | |
5 5RT 5IN |
0 | Pending |
| Saini (2009) | Drug-resistance associated mutations in HIV-1 among patients failing fixed dose combinations of antiretroviral drugs | Unpublished | 1e-49 | |
11 11PR |
0 | Unpublished |
| Saini (2009) | High rate of drug resistance associated mutations in HIV-1 among patients failing fixed dose combinations of first line antiretroviral therapy | Unpublished | 1e-49 | |
5 5PR |
0 | Pending |
| Sakamoto (2006) | INFECTIOUS DNA clones of CRF01_AE HIV-1 derived from Thainian isolates | Unpublished | 0 | |
5 5PR 5RT 5IN |
0 | Unpublished |
| Sakamoto (2006) | INFECTIOUS molecular clones of subtype B HIV-1 derived from Japanese patients | Unpublished | 0 | |
2 2PR 2RT 2IN |
0 | Unpublished |
| Sakamoto (2006) | CONSTRUCTION and characterization of naive HIV-1 subtype A infectious molecular clones derived from Rwanda patients for reference | Unpublished | 0 | |
132 25PR 132RT 132IN |
0 | Unpublished |
| Sakamoto (2006) | CONSTRUCTION and characterization of an unique mosaic HIV-1 subtype C infectious molecular clones derived from a japanese patients | Unpublished | 0 | |
2 2RT 2IN |
0 | Laboratory/experimental isolate |
| Sakamoto (2009) | Molecular characterization of subtype F infectious molecular clones possibly derived from Brazil | Unpublished | 0 | |
4 4RT 4IN |
0 | Unpublished |
| Saladini (2010) | Near full-length sequence analysis of HIV-1 BF recombinants from Italy | Unpublished | 0 | |
14 1PR 14RT 14IN |
0 | Unpublished |
| Salazar-Gonzalez (2009) | HIV-1 sequences in acute and early infection reveal the genetic identity, biological phenotype, and precise evolutionary pathways of transmitted/founder viruses and their progeny | Unpublished | 0 | |
333 166PR 204RT 333IN |
0 | Pending |
| Salazar-Gonzalez (2009) | Full-length Genomes of Transmitted/Founder Viruses Reveal Biological Properties and Precise Evolutionary Pathways of HIV-1 in Acute and Early Infection | Unpublished | 0 | |
13 8PR 8RT 13IN |
0 | Pending |
| Salgado (2009) | Mutation N155H in HIV-2 integrase confers high phenotypic resistance to raltegravir and impairs replication capacity | J Clin Virol. 2009 Oct;46(2):173-5. Epub 2009 Jul 22. | 1e-100 | |
5 5IN |
0 | Pending |
| Salminen (1995) | RECOVERY of virtually full-length HIV-1 provirus of diverse subtypes from primary virus cultures using the polymerase chain reaction | Virology 213 (1), 80-86 (1995) | 1e-165 | 1 1PR 1RT 1IN |
3 3PR 3RT 3IN |
33 | Laboratory/experimental isolate |
| Salminen (1996) | FULL-LENGTH sequence of an ethiopian human immunodeficiency virus type 1 (HIV-1) isolate of genetic subtype C | AIDS Res. Hum. Retroviruses 12 (14), 1329-1339 (1996) | 1e-160 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Salminen (1997) | EVOLUTION and probable transmission of intersubtype recombinant human immunodeficiency virus type 1 in a Zambian couple | J. Virol. 71 (4), 2647-2655 (1997) | 2e-71 | |
2 2PR |
0 | Case report(s) / study subset |
| Salminen (1998) | RAPID and simple characterization of in vivo HIV-1 sequences using solid-phase direct sequencing | AIDS Res. Hum. Retroviruses 8 (9), 1733-1742 (1992) | 1e-162 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | HIVDB |
| Salminen (2000) | CONSTRUCTION and biological characterization of infectious molecular clones of HIV-1 subtypes B and E (CRF01_AE) generated by the polymerase chain reaction | Virology 278 (1), 103-110 (2000) | 1e-164 | 1 1PR 1RT 1IN |
4 4PR 4RT 4IN |
25 | Laboratory/experimental isolate |
| Samiei (2009) | HIV-1 isolated from Lorestan province protease (pol) gene | Unpublished | 2e-49 | |
5 5PR |
0 | Pending |
| Sanabani (2004) | FULL-LENGTH genome analysis of human immunodeficiency virus type 1 subtype C in Brazil | AIDS Res. Hum. Retroviruses 22 (2), 171-176 (2006) | 0 | 6 6PR 6RT 6IN |
6 6PR 6RT 6IN |
100 | HIVDB |
| Sanabani (2006) | ANALYSIS of the near full length genomes of HIV-1 subtypes B, F and BF recombinant from a cohort of 14 patients in Sao Paulo, Brazil | Infect. Genet. Evol. 6 (5), 368-377 (2006) | 0 | 14 14PR 14RT 14IN |
14 13PR 14RT 14IN |
100 | HIVDB |
| Sanabani (2009) | Near full-length genome analysis of low prevalent human immunodeficiency virus type 1 subclade F1 in Sao Paulo, Brazil | Virol. J. 6, 78 (2009) | 0 | 5 5PR 5RT 5IN |
5 5RT 5IN |
100 | HIVDB |
| Sanabani (2010) | Characterization and frequency of a newly identified HIV-1 BF1 intersubtype circulating recombinant form in Sao Paulo, Brazil | Virol. J. 7, 74 (2010) | 0 | 6 6PR 6RT 6IN |
6 6RT 6IN |
100 | HIVDB |
| Sanchez (2004) | MOLECULAR and epidemiological characterization of HIV-1 infected individuals from Medellin, Colombia | Unpublished | 0 | 37 37PR 37RT 8IN |
45 45PR 45RT 8IN |
82 | HIVDB |
| Sanchez-Merino (2007) | GENETIC Changes Associated with Distinct Patterns of HIV Type 1 Persistence in Chronically Infected Cell Lines | AIDS Res. Hum. Retroviruses 23 (2), 251-260 (2007) | 0 | |
3 3PR 3RT 3IN |
0 | Laboratory/experimental isolate |
| Sanders-Buell (2007) | A Nascent HIV Type 1 Epidemic among Injecting Drug Users in Kabul, Afghanistan Is Dominated by Complex AD Recombinant Strain, CRF35_AD | AIDS Res. Hum. Retroviruses 23 (6), 834-839 (2007) | 0 | 4 4PR 4RT 4IN |
4 1PR 4RT 4IN |
100 | HIVDB |
| Sanders-Buell (2010) | Distinct circulating recombinant HIV-1 strains among injecting drug users and sex workers in Afghanistan | AIDS Res. Hum. Retroviruses 26 (5), 605-608 (2010) | 0 | 11 11PR 11RT 11IN |
11 11RT 11IN |
100 | HIVDB |
| Santhosh (2005) | FULL-LENGTH Genome Characterization of an HIV Type 2 Isolate from India | AIDS Res. Hum. Retroviruses 24 (10), 1315-1317 (2008) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Santiago (2002) | SIVCPZ in wild chimpanzees | Science 295 (5554), 465 (2002) | 1e-136 | 1 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Santiago (2003) | AMPLIFICATION of a complete Simian immunodeficiency virus genome from fecal RNA of a wild chimpanzee | J. Virol. 77 (3), 2233-2242 (2003) | 8e-05 | 1 1PR 1RT 1IN |
1 1PR 1RT |
100 | HIVDB |
| Santiago (2003) | FOCI of Endemic Simian Immunodeficiency Virus Infection in Wild-Living Eastern Chimpanzees (Pan troglodytes schweinfurthii) | J. Virol. 77 (13), 7545-7562 (2003) | 2e-51 | |
3 3IN |
0 | Pending |
| Santiago (2003) | NONINVASIVE Detection of Simian Immunodeficiency Virus Infection in a Wild-Living L'Hoest's Monkey (Cercopithecus lhoesti) | AIDS Res. Hum. Retroviruses 19 (12), 1163-1166 (2003) | 5e-61 | |
1 1IN |
0 | Pending |
| Santos (2005) | CHARACTERIZATION of a new circulating recombinant form comprising HIV-1 subtypes C and B in southern Brazil | AIDS 20 (16), 2011-2019 (2006) | 0 | 102 95PR 68RT 1IN |
102 81PR 62RT 1IN |
100 | HIVDB |
| Saracino (2005) | IMPACT of unreported HIV-1 reverse transcriptase mutations on phenotypic resistance to nucleoside and non-nucleoside inhibitors | J. Med. Virol. 78 (1), 9-17 (2006) | 0 | |
37 36PR 37RT |
0 | Pending |
| Saracino (2007) | GENOTYPIC resistance to tipranavir/ritonavir (TPV/r) in PI-experienced HIV patients enrolled in the Italian Expanded Access Program for Tipranavir | Unpublished | 0 | |
106 21PR 101RT |
0 | Unpublished |
| Saracino (2008) | ANTIRETROVIRAL genotypic resistance in plasma RNA and whole blood DNA in HIV-1 infected patients failing HAART | J. Med. Virol. 80 (10), 1695-1706 (2008) | 0 | |
121 72PR 77RT |
0 | Pending |
| Sarkar (2011) | HIV-1 recombinants among Manipur IDUs, India | Unpublished | 1e-178 | |
1 1RT 1IN |
0 | Unpublished |
| Sarker (2010) | Detection of a rare HIV-1 strain CRF16_A2D in Bangladesh | Unpublished | 1e-145 | |
2 2IN |
0 | Pending |
| Sato (2000) | CONVERGENT evolution of reverse transcriptase (RT) genes of human immunodeficiency virus type 1 subtypes E and B following nucleoside analogue RT inhibitor therapies | J. Virol. 74 (11), 5357-5362 (2000) | 3e-59 | |
7 7RT |
0 | Case report(s) / study subset |
| Sato (2001) | AUGMENTATION of human immunodeficiency virus type 1 subtype E (CRF01_AE) multiple-drug resistance by insertion of a foreign 11-amino-acid fragment into the reverse transcriptase | J. Virol. 75 (12), 5604-5613 (2001) | 1e-165 | |
93 11PR 93RT 1IN |
0 | Evolution/quasispecies study |
| Sato (2007) | CONSTRUCTION and characterization of multidrug-resistant HIV-1 subtype B infectious molecular clones derived from Japanese patients for reference | Unpublished | 0 | |
4 2PR 4RT 4IN |
0 | Laboratory/experimental isolate |
| Sauermann (1990) | MOLECULAR cloning and characterization of a German HIV-1 isolate | AIDS Res. Hum. Retroviruses 6 (6), 813-823 (1990) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Saurya (2002) | MOLECULAR characterization of HIV-1 from HAART treated AIDS patients with discordance between viral load and Cd4+ T cells | Thesis (2002) Department of Haemtological Medicine, Universi | 1e-124 | |
31 16PR 15RT 15IN |
0 | ARV Rx and/or other data are N/A |
| Schaefer (2005) | GENETIC analysis of HIV-seropositive, Western Blot indeterminate individuals in Kinshasa, Zaire in the mid 1980s: no evidence for unusual HIV variants | Unpublished | 2e-50 | |
1 1PR |
0 | Case report(s) / study subset |
| Schaefer (2005) | HIV-1 complex recombinant CRF06-cpx was the predominant strain in Burkina Faso by the mid 1980s | Unpublished | 8e-52 | 57 57PR |
59 58PR 1IN |
96 | HIVDB |
| Schapiro (1997) | THE effect of high-dose saquinavir on viral load and CD4+ T-cell counts in HIV-infected patients | Unpublished | 1e-128 | 67 67PR |
68 68PR |
98 | HIVDB |
| Schmit (1997) | MULTIPLE dideoxynucleoside analogue resistant (MddNR) HIV-1 strains isolated from patients from different european countries | Unpublished | 1e-121 | 23 23RT |
38 5PR 33RT |
60 | Case report(s) / study subset |
| Schmit (1997) | RESISTANCE-RELATED mutations in the HIV-1 protease gene of patients treated for 1 year with the protease inhibitor ritonavir (ABT-538) | AIDS 10 (9), 995-999 (1996) | 1e-130 | 14 14PR |
15 15PR |
93 | HIVDB |
| Schmit (1998) | EVOLUTION of HIV drug resistance in zidovudine (ZDV)/zalcitabine (ddC) and ZDV/diddanosine (ddI) - experienced patients receiving lamivudine (3TC) - containing combination therapy | Unpublished | 1e-98 | 41 41RT |
41 41RT |
100 | HIVDB |
| Schmitz (2004) | LV2, a Novel Postentry Restriction, Is Mediated by both Capsid and Envelope | J. Virol. 78 (4), 2006-2016 (2004) | 0 | |
2 2PR 2RT 2IN |
0 | Laboratory/experimental isolate |
| Schroeder (2005) | CHARACTERIZATION of Intersubtype Recombinant HIV Type 1 Genomes Using a Nonradioactive Heteroduplex Tracking Assay | AIDS Res. Hum. Retroviruses 21 (4), 314-318 (2005) | 1e-121 | |
3 1PR 2RT |
0 | Case report(s) / study subset |
| Schuurman (2001) | DIRECT Submission | Submitted (31-OCT-2001) Virology, UMCU, Heidelberglaan 100, | 1e-135 | |
2 2PR 2RT |
0 | Laboratory/experimental isolate |
| Scriba (2001) | CHARACTERIZATION and phylogenetic analysis of South African HIV-1 subtype C accessory genes | AIDS Res. Hum. Retroviruses 17 (8), 775-781 (2001) | 4e-19 | |
22 22IN |
0 | Gene fragment(s) |
| Seclen (2010) | High prevalence of natural polymorphisms in gag (CA-SP1) associated with reduced response to Bevirimat, an HIV-1 maturation inhibitor | AIDS 24, 467 (2010) | 0 | |
388 173PR 388RT |
0 | ARV Rx and/or other data are N/A. |
| Seki (1995) | ISOLATION and characterization of human immunodeficiency virus type-1 mutants resistant to the non-nucleotide reverse transcriptase inhibitor MKC-442 | Antivir. Chem. Chemother. 6, 73-79 (1995) | 3e-69 | |
5 5RT |
0 | HIVDB |
| Sen (2007) | HUMAN immunodeficiency virus type 1 drug resistance mutations in peripheral blood mononuclear cell proviral DNA among antiretroviral treatment-naive and treatment-experienced patients from Pune, India | AIDS Res. Hum. Retroviruses 23 (4), 489-497 (2007) | 0 | 23 23PR 23RT |
75 33PR 75RT |
30 | HIVDB |
| Sen (2007) | HIGH Prevalence of Human Immunodeficiency Virus Type 1 Drug Resistance Mutations in Antiretroviral Treatment-Experienced Patients from Pune, India | AIDS Res. Hum. Retroviruses 23 (10), 1303-1308 (2007) | 0 | 63 63PR 63RT |
63 2PR 63RT 1IN |
100 | HIVDB |
| Sengupta (2010) | Characterization of the transframe region and full protease gene of HIV-1 from India | Unpublished | 3e-51 | |
5 5PR |
0 | Unpublished |
| Seoighe (2007) | A Model of Directional Selection Applied to the Evolution of Drug Resistance in HIV-1 | Mol. Biol. Evol. (2007) In press | 1e-169 | 600 600RT |
600 600RT |
100 | HIVDB |
| Servais (2000) | DIRECT Submission | Thesis (2001) Department of Departement de Microbiologie, Im | 1e-133 | 86 43PR 43RT |
148 74PR 74RT |
58 | HIVDB |
| Servais (2001) | COMPARISON of DNA sequencing and a line probe assay for detection of human immunodeficiency virus type 1 drug resistance mutations in patients failing highly active antiretroviral therapy | J. Clin. Microbiol. 39 (2), 454-459 (2001) | 1e-133 | 247 152PR 95RT |
380 268PR 112RT |
65 | HIVDB |
| Sevin (2000) | METHODS for investigation of the relationship between drug-susceptibility phenotype and human immunodeficiency virus type 1 genotype with applications to AIDS clinical trials group 333 | J. Infect. Dis. 182 (1), 59-67 (2000) | 1e-128 | 71 71PR |
72 72PR |
98 | HIVDB |
| Shafer (2001) | ONLINE comparison of HIV-1 drug resistance algorithms identifies rates and causes of discordant interpretations | Antiviral Therapy 6 (Suppl. 1), 101 (2001) | 1e-133 | 2174 2159PR 2160RT |
2206 2192PR 2192RT |
98 | HIVDB |
| Shafer (1995) | DRUG resistance and heterogeneous long-term virologic responses of human immunodeficiency virus type 1-infected subjects to zidovudine and didanosine combination therapy. The AIDS Clinical Trials Group 143 Virology Team | J. Infect. Dis. 172 (1), 70-78 (1995) | 1e-98 | 53 53RT |
53 53RT |
100 | HIVDB |
| Shafer (1997) | SEQUENCE and drug susceptibility of subtype C reverse transcriptase from human immunodeficiency virus type 1 seroconverters in Zimbabwe | J. Virol. 71 (7), 5441-5448 (1997) | 4e-65 | 12 12RT |
12 12RT |
100 | HIVDB |
| Shafer (1998) | MULTIPLE concurrent reverse transcriptase and protease mutations and multidrug resistance of HIV-1 isolates from heavily treated patients | Ann. Intern. Med. 128 (11), 906-911 (1998) | 1e-126 | 41 21PR 20RT |
42 22PR 20RT |
97 | HIVDB |
| Shafer (1998) | HIV-1 protease from patients in the United States who have not received protease inhibitors | Unpublished | 1e-135 | 51 51PR |
51 51PR |
100 | HIVDB |
| Shafer (1999) | SEQUENCE and drug susceptibility of subtype C protease from human immunodeficiency virus type 1 seroconverters in Zimbabwe | AIDS Res. Hum. Retroviruses 15 (1), 65-69 (1999) | 8e-92 | 12 12PR |
12 12PR |
100 | HIVDB |
| Shafer (2000) | REPRODUCIBILITY of human immunodeficiency virus type 1 (HIV-1) protease and reverse transcriptase sequencing of plasma samples from heavily treated HIV-1-infected individuals | J. Virol. Methods 86 (2), 143-153 (2000) | 1e-116 | 37 37PR |
51 44PR 7RT |
72 | HIVDB |
| Shahid (2011) | HIV-1 Circulating Recombinant Form (CRF) in Nepal | J. Virol. (2011) In press | 1e-166 | 6 6PR 6RT |
6 6RT |
100 | HIVDB |
| Shahriar (2009) | Nonpolymorphic HIV-1 Protease and RT Treatment-Selected Mutations | Unpublished | 0 | 5563 2593PR 2970RT |
5563 2593PR 2970RT |
100 | HIVDB |
| Shahriar (2009) | Nonpolymorphic HIV-1 Protease and RT Treatment-Selected Mutations | Unpublished | 1e-48 | 14 14PR |
14 14PR |
100 | HIVDB |
| Shahriar (2009) | Nonpolymorphic HIV-1 Protease and RT Treatment-Selected Mutations | Unpublished | 9e-49 | 9 9PR |
9 9PR |
100 | HIVDB |
| Shang (2004) | GENOTYPIC Resistance Mutation to Antiretroviral Drugs in Treatment-Naive HIV/AIDS Patients in the Northeast of China | Unpublished | 1e-114 | 54 54PR 54RT |
54 54PR 54RT |
100 | HIVDB |
| Shanmugasundaram (2008) | DISTINCT patterns of evolution in reverse transcriptase gene of HIV-1 subtype C in anti-retroviral naive and treated patients | AIDS Res Hum Retroviruses. 2010 Sep 19. [Epub ahead of print | 1e-180 | |
1 1RT |
0 | Pending |
| Shanmugasundaram (2008) | Limited evolution of HIV-1 reverse transcriptase and protease in heterosexual transmission pairs | Unpublished | 4e-49 | |
7 7PR |
0 | Unpublished |
| Shanmugasundaram (2009) | Pattern of nucleotide substitutions in reverse transcriptase region of HIV-1 subtype C among individuals untreated and treated with antiretroviral drugs | Unpublished | 4e-49 | |
3 3PR |
0 | Pending |
| Sheehy (1996) | CONCURRENT evolution of regions of the envelope and polymerase genes of human immunodeficiency virus type 1 during zidovudine (AZT) therapy | J. Gen. Virol. 77 (Pt 5), 1071-1081 (1996) | 3e-50 | |
46 46RT |
0 | Evolution/quasispecies study |
| Sherefa (1998) | FULL-LENGTH sequence of human immunodeficiency virus type 1 subtype A, recombined with subtype C in the env V3 domain | AIDS Res. Hum. Retroviruses 14 (3), 289-292 (1998) | 1e-162 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Shi (2010) | Evolution and recombination of genes encoding HIV-1 drug resistance and tropism during antiretroviral therapy | Virology 404 (1), 5-20 (2010) | 0 | |
137 68PR 137RT 15IN |
0 | Pending |
| Shi (2004) | CONSTRUCTION of an infectious HIV type 1 molecular clone from an African patient with a subtype D/C Recombinant Virus | AIDS Res. Hum. Retroviruses 20 (9), 1015-1018 (2004) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Shibata (1995) | ISOLATION and characterization of a syncytium-inducing, macrophage/T-cell line-tropic human immunodeficiency virus type 1 isolate that readily infects chimpanzee cells in vitro and in vivo | J. Virol. 69 (7), 4453-4462 (1995) | 1e-160 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Shibata (2006) | CONSTRUCTION and characterization of an infectious DNA clone and of mutants of simian immunodeficiency virus isolated from the African green monkey | J. Virol. 64 (1), 307-312 (1990) | 0 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Shiino (2002) | EVOLUTIONARY analysis of ultra-frequent defective G to A mutations observed in the provirus of HIV-1 infected patients under long-term anti-retroviral drug therapy | Unpublished | 4e-29 | |
30 30PR |
0 | Gene fragment(s) |
| Shriner (2004) | PERVASIVE Genomic Recombination of HIV-1 in Vivo | Genetics 167 (4), 1573-1583 (2004) | 0.02 | |
19 19IN |
0 | Gene fragment(s) |
| Si-Mohamed (2000) | SELECTION of drug-resistant variants in the female genital tract of human immunodeficiency virus type 1-infected women receiving antiretroviral therapy | J. Infect. Dis. 182 (1), 112-122 (2000) | 1e-128 | 85 42PR 43RT |
85 42PR 43RT |
100 | HIVDB |
| Sichtig (2008) | LONGITUDINAL analysis of HIV-1 integrase mutation profiles in response to Raltegravir | Unpublished | 1e-165 | 223 223IN |
224 224IN |
99 | HIVDB |
| Sierra (2004) | THE analysis of near full-length genome sequences of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Chile, Venezuela and Spain reveals their relationship to diverse lineages of recombinant viruses related to CRF12_BF | Infect. Genet. Evol. (2004) In press | 0 | 6 6PR 6RT 6IN |
6 6PR 6RT 6IN |
100 | HIVDB |
| Sierra (2006) | IDENTIFICATION of 3 phylogenetically related HIV-1 BG intersubtype circulating recombinant forms in Cuba | J. Acquir. Immune Defic. Syndr. 45 (2), 151-160 (2007) | 0 | 14 14PR 14RT 14IN |
20 5PR 20RT 20IN |
70 | HIVDB |
| Sierra (2007) | ANALYSIS of near full-length genome sequences of HIV-1 isolates of Romanian origin | Unpublished | 0 | |
3 3RT 3IN |
0 | Case report(s) / study subset |
| Sierra (2006) | IDENTIFICATION of HIV-1 determinants of cytopathogenicity and coreceptor usage | Unpublished | 0.023 | |
39 39IN |
0 | Gene fragment(s) |
| Sierra (2009) | Selection of Thymidine Analog Resistance Mutational Patterns in Children Infected from a Common HIV-1 Subtype G Source | Unpublished | 0 | |
37 37RT |
0 | Evolution/quasispecies study |
| Simon (2002) | IDENTIFICATION of a new human immunodeficiency virus type 1 distinct from group M and group O | Nat. Med. 4 (9), 1032-1037 (1998) | 2e-32 | 1 1PR 1RT 1IN |
1 1PR 1RT |
100 | HIVDB |
| Simon (2008) | COMPLEMENTATION of vif-defective human immunodeficiency virus type 1 by primate, but not nonprimate, lentivirus vif genes | J. Virol. 69 (7), 4166-4172 (1995) | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Simon (2002) | EVOLVING patterns of HIV-1 resistance to antiretroviral agents in newly infected individuals | AIDS 16 (11), 1511-1519 (2002) | 1e-135 | 184 152PR 152RT |
184 152PR 152RT |
100 | HIVDB |
| Simon (2003) | INFECTIVITY and Replication Capacity of Drug-Resistant Human Immunodeficiency Virus Type 1 Variants Isolated during Primary Infection | J. Virol. 77 (14), 7736-7745 (2003) | 1e-144 | |
36 36PR 18RT |
0 | Case report(s) / study subset |
| Simon (2005) | NATURAL Variation in Vif: Differential Impact on APOBEC3G/3F and a Potential Role in HIV-1 Diversification | PLoS Pathog. 1 (1), e6 (2005) | 0 | |
26 8PR 13RT 13IN |
0 | Case report(s) / study subset |
| Sirivichayakul (2001) | SURVEY of reverse transcriptase from the heterosexual epidemic of human immunodeficiency virus type 1 CRF01_AE in Thailand from 1990 to 2000 | AIDS Res. Hum. Retroviruses 17 (11), 1077-1081 (2001) | 1e-81 | 43 3PR 43RT |
43 3PR 43RT |
100 | HIVDB |
| Sirivichayakul (2005) | RT and protease sequences from HIV-1 non-B infected persons from Thailand | Unpublished | 1e-138 | 106 12PR 94RT |
106 12PR 94RT |
100 | HIVDB |
| Skaria (2011) | Genetic compartmentalization of antiretroviral resistance mutations, HLA-associated polymorphisms and envelope V3 genotype in plasma viruses during advanced HIV infection | Unpublished | 0 | |
70 69PR 70RT |
0 | Pending |
| Skinner (1998) | ANALYSIS of a large collection of natural HIV-1 integrase sequences, including those from long-term nonprogressors | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 19 (2), 99- | 1e-165 | 102 102IN |
102 102IN |
100 | HIVDB |
| Smith (2005) | HIV Drug Resistance Acquired Through Superinfection (DRATS) | Unpublished | 0 | |
5 5PR 5RT |
0 | Case report(s) / study subset |
| Smith (2000) | DIRECT Submission | Submitted (30-DEC-1996) Medical Microbiology and Immunology, | 2e-08 | 1 1RT |
1 1RT 1IN |
100 | HIVDB |
| Smolen (2010) | HIV type 1 genetic diversity in Silesia, Poland: a retrospective analysis | AIDS Res. Hum. Retroviruses 26 (7), 767-776 (2010) | 1e-146 | |
4 4RT |
0 | Pending |
| Snoeck (2002) | PREVALENCE and origin of HIV-1 group M subtypes among patients attending a Belgian hospital in 1999 | Virus Res. 85 (1), 95-107 (2002) | 1e-120 | 18 15PR 16RT |
45 39PR 42RT |
40 | HIVDB |
| Soares (2004) | EPIDEMIOLOGIC and molecular characterization of human immunodeficiency virus type 1 in Southern Brazil | Unpublished | 1e-138 | 86 69PR 71RT |
91 70PR 77RT 4IN |
94 | HIVDB |
| Soares (2007) | Differential kinetics of drug resistance mutation acquisition in HIV-1 of subtypes B and C | Unpublished | 1e-142 | 5 5PR |
16 13PR 3RT |
31 | HIVDB |
| Soares (2010) | Molecular diversity and polymerase gene genotypes of HIV-1 among treatment-naive Cameroonian subjects with advanced disease | J. Clin. Virol. 48 (3), 173-179 (2010) | 1e-149 | 29 26PR 27RT |
29 10PR 24RT |
100 | HIVDB |
| Soares (1997) | A full-length and replication-competent proviral clone of SIVAGM from tantalus monkeys | Virology 228 (2), 394-399 (1997) | 0.1 | 1 1PR 1RT 1IN |
1 1PR 1RT |
100 | HIVDB |
| Soares (2003) | A specific subtype C of human immunodeficiency virus type 1 circulates in Brazil | AIDS 17 (1), 11-21 (2003) | 1e-133 | 190 97PR 93RT |
190 97PR 93RT |
100 | HIVDB |
| Sodroski (1993) | A second post-transcriptional trans-activator gene required for HTLV-III replication | Nature 321 (6068), 412-417 (1986) | 2e-10 | |
1 1IN |
0 | Laboratory/experimental isolate |
| Sofie (2006) | LONG-TERM Foscarnet Therapy Remodels Thymidine Analog Mutations and Alters Resistance to Zidovudine and Lamivudine in Human Immunodeficiency Virus-1 | Unpublished | 0 | |
27 13PR 27RT |
0 | ARV Rx and/or other data are N/A |
| Soheilli (2009) | Presence of HIV-1 CRF35_AD in Iran | AIDS Res. Hum. Retroviruses 25 (1), 123-124 (2009) | 1e-143 | 3 1PR 2RT |
3 1PR 2RT |
100 | HIVDB |
| Solomon (2006) | HIGH prevalence of treatment failure among treatment-experienced HIV-infected individuals in Chennai, India | Unpublished | 1e-177 | |
12 12RT |
0 | Pending |
| Songok (2003) | ACTIVE generation and selection for A/D recombinant forms of HIV-1 in Kenya | Unpublished | 1e-122 | |
24 24RT |
0 | Pending |
| Soto-Ramirez (1997) | HIV-1 pol sequences from India fit distinct subtype pattern | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 13 (4), 299 | 5e-58 | 5 5RT |
5 5RT |
100 | HIVDB |
| Soulie (2009) | Presence of HIV-1 R5 viruses in CSF even in patients harboring R5X4/X4 viruses in plasma | Unpublished | 1e-147 | |
20 19PR 1RT |
0 | Case report(s) / study subset |
| Soundararajan (2007) | CHARACTERIZATION of HIV-1 Isolates from Antiretroviral Drug-Naive Children in Southern India | AIDS Res. Hum. Retroviruses 23 (9), 1119-1126 (2007) | 1e-144 | 33 1PR 32RT |
33 1PR 32RT |
100 | HIVDB |
| Souquiere (2001) | WILD Mandrillus sphinx are carriers of two types of lentivirus | J. Virol. 75 (15), 7086-7096 (2001) | 1e-123 | 19 1PR 1RT 19IN |
19 1PR 2RT 19IN |
100 | HIVDB |
| Souquiere (2006) | THE two distinct SIVs infecting Mandrillus sphinx were subjected to differential selection in env region | Unpublished | 3e-88 | 14 14IN |
14 14IN |
100 | HIVDB |
| Souza (2008) | MOLECULAR Characterization of HIV Type 1 BF Pol Recombinants from Sao Paulo, Brazil | AIDS Res. Hum. Retroviruses 24 (12), 1521-1525 (2008) | 0 | |
36 6PR 36RT |
0 | ARV Rx and/or other data are N/A |
| Sova (1995) | CONSERVATION of an intact human immunodeficiency virus type 1 vif gene in vitro and in vivo | J. Virol. 69 (4), 2557-2564 (1995) | 0.02 | |
42 42IN |
0 | Gene fragment(s) |
| Spire (1989) | NUCLEOTIDE sequence of HIV1-NDK: a highly cytopathic strain of the human immunodeficiency virus | Gene 81 (2), 275-284 (1989) | 1e-164 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Spivak (2009) | A Case of Seronegative HIV-1 Infection | J Infect Dis. 2010 Feb 1;201(3):341-5. | 1e-171 | |
1 1PR 1RT |
0 | Case report(s) / study subset |
| Srinivasan (1993) | MOLECULAR characterization of human immunodeficiency virus from Zaire: nucleotide sequence analysis identifies conserved and variable domains in the envelope gene | Gene 52 (1), 71-82 (1987) | 3e-79 | |
1 1IN |
0 | Gene fragment(s) |
| Ssemwanga (2010) | Multiple HIV-1 Infections in Sexual Partnerships in a Rural Clinical Cohort in Uganda | Unpublished | 5e-57 | |
107 107IN |
0 | Evolution/quasispecies study |
| Ssemwanga (2011) | HIV-1 subtype distribution, multiple infections, sexual networks and life histories in a cohort of women engaged in risky sexual behavior in Kampala, Uganda | Unpublished | 4e-41 | |
792 792IN |
0 | Unpublished |
| Ssemwanga (2011) | Transmitted antiretroviral drug resistance among drug-naive commercial sex workers with recent infection in Kampala, Uganda | Unpublished | 2e-51 | |
19 19PR |
0 | Unpublished |
| Stanojevic (2002) | HIV-1 subtypes in Yugoslavia | AIDS Res. Hum. Retroviruses 18 (7), 519-522 (2002) | 2e-97 | 33 33RT |
33 33RT |
100 | HIVDB |
| Stanojevic (2003) | GENOTYPIC resistance of HIV-1 among patients in Serbia and Montenegro | Unpublished | 1e-49 | |
10 10PR |
0 | Gene fragment(s) |
| Starcich (1986) | IDENTIFICATION and characterization of conserved and variable regions in the envelope gene of HTLV-III/LAV, the retrovirus of AIDS | Cell 45 (5), 637-648 (1986) | 1e-120 | 1 1PR 1RT 1IN |
1 1PR 1RT |
100 | HIVDB |
| Stoeckli (2002) | PHENOTYPIC and genotypic analysis of biologically cloned human immunodeficiency virus type 1 isolates from patients treated with Zidovudine and Lamivudine | Antimicrob. Agents Chemother. 46 (12), 4000-4003 (2002) | 4e-96 | |
41 41RT |
0 | Pending |
| Stone (2004) | HIV-1 reverse transcriptase (RT) mutation selection during in vitro exposure to Tenofovir +/- Abacavir and Tenofovir +/- Lamivudine | Unpublished | 0 | |
21 21RT |
0 | Pending |
| Strain (2005) | GENETIC Composition of Human Immunodeficiency Virus Type 1 in Cerebrospinal Fluid and Blood without Treatment and during Failing Antiretroviral Therapy | J. Virol. 79 (3), 1772-1788 (2005) | 0 | |
36 36PR 36RT |
0 | Evolution/quasispecies study |
| Streeck (2008) | IMMUNE-DRIVEN recombination and loss of control after HIV superinfection | J. Exp. Med. 205 (8), 1789-1796 (2008) | 0 | |
9 3PR 9RT 9IN |
0 | Case report(s) / study subset |
| Struck (2007) | A new HIV-1 B/F1 unique recombinant form (URF) outbreak in Luxembourg: near full-length genome characterization and phylogenetic analysis | Unpublished | 0 | 20 20PR 20RT 20IN |
21 21RT 21IN |
95 | Case report(s) / study subset |
| Strunnikova (1998) | EVOLUTION of human immunodeficiency virus type 1 in relation to disease progression in children | J. Hum. Virol. 1 (3), 224-239 (1998) | 1e-135 | |
61 61RT |
0 | Evolution/quasispecies study |
| Sturmer (2005) | PHYLOGENETIC analysis of HIV-1 transmission: pol gene sequences are insufficient to clarify true relationships between patient isolates | AIDS 18 (16), 2109-2113 (2004) | 1e-172 | |
23 23PR 23RT |
0 | Pending |
| Stuyver (2001) | LINE probe assay for rapid detection of drug-selected mutations in the human immunodeficiency virus type 1 reverse transcriptase gene | Antimicrob. Agents Chemother. 41 (2), 284-291 (1997) | 0 | |
25 25RT |
0 | ARV Rx and/or other data are N/A |
| Su (2003) | HIV-1 subtype B' dictates the AIDS epidemic among paid blood donors in the Henan and Hubei provinces of China | AIDS 17 (17), 2515-2520 (2003) | 0 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Su (2011) | HIV-1 Subtypes Based on the pol Gene and Primary Drug Resistance in Isolates from Guangxi, Southern China | Unpublished | 1e-166 | |
124 90PR 124RT |
0 | Unpublished |
| Subbarao (2002) | FULL-LENGTH HIV-1 CRF01_AE sequence | Unpublished | 1e-164 | |
1 1PR 1RT 1IN |
0 | HIVDB |
| Sugimoto (2010) | Protection of macaques with diverse MHC genotypes against a heterologous SIV by vaccination with a deglycosylated live-attenuated SIV | PLoS ONE 5 (7), E11678 (2010) | 2e-92 | |
15 15IN |
0 | Laboratory/experimental isolate |
| Sukasem (2005) | SURVEILLANCE of genotypic resistance mutations in chronic HIV-1 treated individuals after completion of the National Access to Antiretroviral Program in Thailand | Infection 35 (2), 81-88 (2007) | 1e-122 | |
350 168PR 182RT |
0 | Pending |
| Sundaravaradan (2005) | GENETIC Characterization of HIV Type 1 Reverse Transcriptase Gene From Mothers and Infants Following Perinatal Transmission | Unpublished | 0 | |
131 131RT |
0 | Evolution/quasispecies study |
| Sung (2000) | NATURAL polymorphisms of protease in protease inhibitor-naive HIV-1 infected patients in Korea: a novel L63M in subtype B | AIDS Res. Hum. Retroviruses 19 (6), 525-530 (2003) | 1e-161 | 69 68PR 15RT 1IN |
160 93PR 102RT 1IN |
43 | HIVDB |
| Sung (2001) | PHYLOGENETIC analysis of reverse transcriptase in antiretroviral drug-naive Korean HIV type 1 patients | AIDS Res. Hum. Retroviruses 17 (16), 1549-1554 (2001) | 4e-96 | 23 23RT |
24 24RT |
95 | HIVDB |
| Sung (2006) | HIGH frequency of drug resistance mutations in human immunodeficiency virus type 1-infected korean patients treated with HAART | AIDS Res. Hum. Retroviruses 23 (10), 1223-1229 (2007) | 1e-136 | |
26 23PR 14RT |
0 | Pending |
| Sutthent (2001) | EFFECT of perinatal short-course zidovudine on the clinical and virological manifestations of HIV-1 subtype E infection in infants | J. Clin. Virol. 25 (1), 47-56 (2002) | 6e-64 | 30 30RT |
30 30RT |
100 | HIVDB |
| Sutthent (2004) | SURVEILLANCE of HIV-1 drug resistance in Thailand | Unpublished | 1e-150 | |
104 36PR 68RT |
0 | Pending |
| Sutthent (2004) | MOLECULAR Epidemiology of HIV-1 in Thailand | Unpublished | 6e-44 | |
67 67RT |
0 | Gene fragment(s) |
| Sutthent (2005) | STUDY of HIV-1 drug resistant mutation in GPO-VIR treated HIV-1 infected Thais | Unpublished | 0 | |
46 37PR 9RT |
0 | Pending |
| Suzuki (2001) | NOVEL deletion of HIV type 1 reverse transcriptase residue 69 conferring selective high-level resistance to nevirapine | AIDS Res. Hum. Retroviruses 17 (13), 1293-1296 (2001) | 2e-91 | |
6 6RT |
0 | Pending |
| Suzuki (2002) | AMINO acid insertions in p6gag of the human immunodeficiency virus type 1 alter incorporation of vpr into virions | Unpublished | 1e-126 | |
5 5PR 5RT |
0 | Case report(s) / study subset |
| Svicher (2005) | NOVEL human immunodeficiency virus type 1 protease mutations potentially involved in resistance to protease inhibitors | Antimicrob. Agents Chemother. 49 (5), 2015-2025 (2005) | 0 | |
148 116PR 148RT |
0 | ARV Rx and/or other data are N/A |
| Svicher (2006) | INVOLVEMENT of novel human immunodeficiency virus type 1 reverse transcriptase mutations in the regulation of resistance to nucleoside inhibitors | J. Virol. 80 (14), 7186-7198 (2006) | 0 | |
424 346PR 423RT |
0 | Pending |
| Swanson (2003) | MOLECULAR Characterization of 39 HIV-1 Isolates Representing Group M (Subtypes A-G) and Group O: Sequence Analysis of gag p24, pol integrase, and env gp41 | AIDS Res. Hum. Retroviruses 19 (7), 625-629 (2003) | 1e-165 | 39 39IN |
39 39IN |
100 | HIVDB |
| Swanson (2003) | FULL-LENGTH Sequence Analysis of HIV-1 Isolate CM237: A CRF01_AE/B Intersubtype Recombinant from Thailand | AIDS Res. Hum. Retroviruses 19 (8), 707-712 (2003) | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Tachedjian (1995) | CHARACTERISATION of foscarnet-resistant strains of human immunodeficiency virus type 1 | Virology 212 (1), 58-68 (1995) | 9e-97 | |
9 9RT |
0 | Laboratory/experimental isolate |
| Tachedjian (1996) | ZIDOVUDINE resistance is suppressed by mutations conferring resistance of human immunodeficiency virus type 1 to foscarnet | J. Virol. 70 (10), 7171-7181 (1996) | 5e-89 | |
2 2RT 1IN |
0 | Pending |
| Tachedjian (1998) | CORESISTANCE to zidovudine and foscarnet is associated with multiple mutations in the human immunodeficiency virus type 1 reverse transcriptase | Antimicrob. Agents Chemother. 42 (11), 3038-3043 (1998) | 2e-79 | |
2 2RT |
0 | ARV Rx and/or other data are N/A |
| Takahoko (2001) | INFECTIOUS DNA clone of HIV type 1 A/G recombinant (CRF02_AG) replicable in peripheral blood mononuclear cells | AIDS Res. Hum. Retroviruses 17 (11), 1083-1087 (2001) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Takebe (2003) | HIGH prevalence of diverse forms of HIV-1 intersubtype recombinants in Central Myanmar: geographical hot spot of extensive recombination | Unpublished | 0 | 9 9PR 9RT 9IN |
9 9PR 9RT 9IN |
100 | HIVDB |
| Takehisa (1998) | VARIOUS types of HIV mixed infections in Cameroon | Virology 245 (1), 1-10 (1998) | 8e-49 | |
48 48IN |
0 | Gene fragment(s) |
| Takehisa (1999) | HUMAN immunodeficiency virus type 1 intergroup (M/O) recombination in cameroon | J. Virol. 73 (8), 6810-6820 (1999) | 4e-95 | |
9 9IN |
0 | Gene fragment(s) |
| Takehisa (2001) | PHYLOGENETIC analysis of HIV type 2 in Ghana and intrasubtype recombination in HIV type 2 | AIDS Res. Hum. Retroviruses 13 (7), 621-623 (1997) | 2e-48 | |
11 11IN |
0 | Gene fragment(s) |
| Takehisa (2001) | NATURAL infection of wild-born mandrills (Mandrillus sphinx) with two different types of simian immunodeficiency virus | AIDS Res. Hum. Retroviruses 17 (12), 1143-1154 (2001) | 2e-98 | 6 1PR 1RT 6IN |
6 1PR 1RT 5IN |
100 | HIVDB |
| Takehisa (2001) | TRIPLE HIV-1 infection with group O and Group M of different clades in a single Cameroonian AIDS patient | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 14 (1), 81- | 6e-44 | |
3 3IN |
0 | Case report(s) / study subset |
| Takehisa (2007) | GENERATION of infectious molecular clones of simian immunodeficiency virus from fecal consensus sequences of wild chimpanzees | J. Virol. 81 (14), 7463-7475 (2007) | 0 | 5 5PR 5RT 5IN |
5 5RT 5IN |
100 | HIVDB |
| Takehisa (2009) | Origin and biology of simian immunodeficiency virus in wild-living western gorillas | J. Virol. 83 (4), 1635-1648 (2009) | 0 | |
7 5RT 7IN |
0 | Pending |
| Takekawa (2006) | CONSTRUCTION and characterization of HIV-1 subtype G infectious molecular clones derived from a Ghananian patient | Unpublished | 0 | 2 2PR 2RT 2IN |
2 2PR 2RT 2IN |
100 | Laboratory/experimental isolate |
| Takekawa (2009) | A new generation of recombinants between CRF02_AG and subtype A detected in Ghana : analysis by infectious molecular clones | Unpublished | 0 | |
5 5RT 5IN |
0 | Unpublished |
| Takekawa (2009) | Molecular characterization of infectious molecular clones derived from multidrug-resistant HIV-1 subtype B in Japan | Unpublished | 0 | |
5 5RT 5IN |
0 | Unpublished |
| Takekawa (2009) | Molecular characterization of infectious molecular clones derived from naive subtype B HIV-1 in Japan | Unpublished | 0 | |
2 2PR 2RT 2IN |
0 | Unpublished |
| Takekawa (2009) | A comprehensive panel of infectious molecular clones derived from HIV isolates of BBI subtype infectivity panel | Unpublished | 0 | |
40 10PR 40RT 40IN |
0 | Unpublished |
| Takemura (2005) | A novel simian immunodeficiency virus from black mangabey (Lophocebus aterrimus) in the Democratic Republic of Congo | J. Gen. Virol. 86 (PT 7), 1967-1971 (2005) | 1e-152 | 1 1RT |
1 1RT 1IN |
100 | HIVDB |
| Takeuchi (2002) | ISOLATION and characterization of an infectious HIV type 1 molecular clone from a patient with primary infection | AIDS Res. Hum. Retroviruses 18 (15), 1127-1133 (2002) | 1e-163 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Tamalet (2000) | MULTIDRUG resistance genotypes (insertions in the beta3-beta4 finger subdomain) of HIV-1 RT in clinical isolates | Unpublished | 1e-123 | 7 7RT |
154 79PR 75RT |
4 | HIVDB |
| Tan (2007) | CONSTRUCTION and characterization of an infectious molecular clone of HIV-1 subtype B' isolated from Hubei Province, China | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Tang (2007) | DRUG-RESISTANT associated mutations in RT of AIDS patients with ART in Hubei, China | Unpublished | 1e-169 | |
173 160PR 169RT |
0 | Pending |
| Tang (2009) | Viral attenuation due to HLA-B57 escape mutations enables control of HIV following vertical transmission despite depletion of CD8 T cell targets | Unpublished | 3e-50 | |
1 1PR |
0 | Case report(s) / study subset |
| Tanuma (2011) | Impact of CRF01_AE-specific polymorphic mutations G335D and A371V in the connection subdomain of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) on susceptibility to nucleoside RT inhibitors | Microbes Infect. 12 (14-15), 1170-1177 (2010) | 1e-162 | |
38 38RT |
0 | Pending |
| Tanuri (1999) | GENETIC variation and susceptibilities to protease inhibitors among subtype B and F isolates in Brazil | Antimicrob. Agents Chemother. 43 (2), 253-258 (1999) | 1e-126 | 8 8PR |
8 8PR |
100 | HIVDB |
| Tanuri (1999) | PRIMARY infections with HIV-1 of women and their offspring in Rio de Janeiro, Brazil: Finding of recombinant of HIV-1 subtypes B and F | Unpublished | 1e-109 | |
1 1PR |
0 | Case report(s) / study subset |
| Tatsumi (2003) | INFECTIOUS DNA clones of HIV-1 subtype A | Unpublished | 0 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Tatsumi (2006) | INFECTIOUS DNA clones of subtype B HIV-1 | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Tatsumi (2006) | INFECTIOUS DNA clones of subtype G and CRF02_AG HIV-1 derived from Ghananian isolates | Unpublished | 0 | 6 6PR 6RT 6IN |
6 2PR 6RT 6IN |
100 | HIVDB |
| Tatsumi (2006) | CONSTRUCTION and characterization of HIV-1 laboratory strain Ba-L infectious molecular clones | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Tatsumi (2006) | CONSTRUCTION and characterization of HIV-1 subtype C infectious molecular clones derived from Zambian isolates | Unpublished | 0 | 16 16PR 16RT 16IN |
16 11PR 16RT 16IN |
100 | HIVDB |
| Taylor (2003) | HIV-1 Costa Rican novel sequences | Unpublished | 1e-122 | |
31 31PR 31RT |
0 | Gene fragment(s) |
| Taylor (2003) | IDENTIFICATION of a transmission chain of HIV typd 1 containing drug resistance-associated mutations | AIDS Res. Hum. Retroviruses 19 (5), 353-361 (2003) | 1e-130 | |
31 31PR 31RT |
0 | Evolution/quasispecies study |
| Tebit (2002) | GENOTYPIC and phenotypic analysis of HIV type 1 primary isolates from western Cameroon | AIDS Res. Hum. Retroviruses 18 (1), 39-48 (2002) | 1e-163 | 19 19PR 1RT 1IN |
20 20PR 20RT 1IN |
95 | HIVDB |
| Tebit (2003) | CONSTRUCTION and characterisation of a full-length infectious molecular clone from a fast replicating, X4-tropic HIV-1 CRF02.AG primary isolate | Virology 313 (2), 645-652 (2003) | 0 | |
1 1RT 1IN |
0 | Laboratory/experimental isolate |
| Tebit (2004) | CONSTRUCTION and characterization of an HIV-1 group O infectious molecular clone and analysis of vpr- and nef-negative derivatives | Virology 326 (2), 329-339 (2004) | 0 | |
2 2PR 2RT 2IN |
0 | Laboratory/experimental isolate |
| Tebit (2009) | Analysis of the diversity of the HIV-1 pol gene and drug resistance associated changes among drug-naive patients in Burkina Faso | J. Med. Virol. 81 (10), 1691-1701 (2009) | 1e-178 | 104 104PR 104RT |
104 1PR 104RT |
100 | HIVDB |
| Tee (2005) | THE Evolving Molecular Epidemiology of HIV Type 1 among Injecting Drug Users (IDUs) in Malaysia | AIDS Res. Hum. Retroviruses 21 (12), 1046-1050 (2005) | 1e-147 | 53 24PR 53RT |
53 24PR 53RT |
100 | HIVDB |
| Tee (2005) | EMERGENCE of HIV-1 CRF01_AE/B unique recombinant forms in Kuala Lumpur, Malaysia | AIDS 19 (2), 119-126 (2005) | 1e-138 | 138 38PR 100RT |
138 38PR 100RT |
100 | HIVDB |
| Tee (2005) | PREVALENCE and pattern of drug resistance mutations among antiretroviral-treated HIV-1 patients with suboptimal virological response in Malaysia | Med. Microbiol. Immunol. (Berl.) 195 (2), 107-112 (2006) | 1e-132 | 63 14PR 49RT |
63 14PR 49RT |
100 | HIVDB |
| Tee (2006) | IDENTIFICATION of a Novel Circulating Recombinant Form (CRF33_01B) Disseminating Widely Among Various Risk Populations in Kuala Lumpur, Malaysia | J. Acquir. Immune Defic. Syndr. 43 (5), 523-529 (2006) | 0 | 8 8PR 8RT 8IN |
8 7PR 8RT 8IN |
100 | HIVDB |
| Tee (2009) | Estimating the date of origin of an HIV-1 circulating recombinant form | Virology 387 (1), 229-234 (2009) | 1e-165 | 9 9PR 9RT |
9 8PR 3RT |
100 | Case report(s) / study subset |
| Tee (2009) | Isolation and characterization of a replication-competent molecular clone of an HIV-1 circulating recombinant form (CRF33_01B) | PLoS ONE 4 (8), E6666 (2009) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | Laboratory/experimental isolate |
| Teixeira (2010) | The Detection of in Vivo and in Vitro HIV Type 1 B/F Profiles in Brazil Using a Real-Time PCR Assay for Five HIV Type 1 Genomic Regions | AIDS Res. Hum. Retroviruses 26 (9), 981-990 (2010) | 0 | |
261 58PR 153RT 50IN |
0 | Pending |
| Teixeira (2006) | HIV-1 polymorphism and resistance mutation profile to antiretroviral drugs in drug-naive injection drug users of Rio de Janeiro, Brazil, in pre- and post-HAART eras | Unpublished | 1e-134 | 65 65PR 65RT |
65 60PR 58RT |
100 | HIVDB |
| Telan (2010) | An Early Phase of HIV Epidemic in a Population Previously Exposed to HCV in the Philippines | Unpublished | 1e-160 | |
22 22PR 4RT |
0 | Unpublished |
| Tendeiro (2006) | HIV-1 sequences variation in Portugal | Unpublished | 0 | |
93 60PR 93RT |
0 | Unpublished |
| THEODORE (1993) | Unpublished (1988) | 1e-166 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB | |
| Theodore (1996) | CONSTRUCTION and characterization of a stable full-length macrophage-tropic HIV type 1 molecular clone that directs the production of high titers of progeny virions | AIDS Res. Hum. Retroviruses 12 (3), 191-194 (1996) | 1e-163 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Thitithanyanont (2006) | PERSISTENT seronegativity in an asymptomatic 27-month-old child with vertical HIV-1-infection | Unpublished | 0 | |
2 1PR 2RT 2IN |
0 | Case report(s) / study subset |
| Thomson (2000) | WIDESPREAD circulation of a B/F intersubtype recombinant form among HIV-1-infected individuals in Buenos Aires, Argentina | AIDS 14 (7), 897-899 (2000) | 9e-98 | 38 38RT |
52 3PR 52RT |
73 | HIVDB |
| Thomson (2001) | HIV-1 genetic diversity in Galicia Spain: BG intersubtype recombinant viruses circulating among injecting drug users | AIDS 15 (4), 509-516 (2001) | 1e-106 | 21 21PR 21RT |
21 21PR 21RT |
100 | HIVDB |
| Thomson (2002) | DIVERSITY of mosaic structures and common ancestry of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Argentina revealed by analysis of near full-length genome sequences | J. Gen. Virol. 83 (Pt 1), 107-119 (2002) | 1e-164 | 8 8PR 8RT 8IN |
8 8PR 8RT 8IN |
100 | HIVDB |
| Thomson (2004) | ANALYSIS of near full-length genome sequences of HIV type 1 BF intersubtype recombinant viruses from Brazil reveals their independent origins and their lack of relationship to CRF12_BF | AIDS Res. Hum. Retroviruses 20 (10), 1126-1133 (2004) | 0 | 8 8PR 8RT 8IN |
8 8PR 8RT 8IN |
100 | HIVDB |
| Thomson (2005) | IDENTIFICATION of a novel HIV-1 complex circulating recombinant form (CRF18_cpx) of Central African origin in Cuba | AIDS (2005) In press | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Thomson (2005) | DIRECT Submission | Submitted (18-JAN-2005) Patogenia Viral, Instituto de Salud | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Thomson (2007) | NEW Insights into the Origin of the HIV Type 1 Subtype A Epidemic in Former Soviet Union's Countries Derived from Sequence Analyses of Preepidemically Transmitted Viruses | AIDS Res. Hum. Retroviruses 23 (12), 1599-1604 (2007) | 0 | 106 106PR 106RT 1IN |
108 69PR 104RT 1IN |
98 | HIVDB |
| Thomson (2009) | Molecular Epidemiology of HIV-1 in St Petersburg, Russia: Predominance of Subtype A, Former Soviet Union Variant, and Identification of Intrasubtype Subclusters | J. Acquir. Immune Defic. Syndr. (2009) In press | 1e-173 | 102 102PR 102RT |
102 81PR 91RT |
100 | HIVDB |
| Thorat (2011) | Surveillance of Transmitted HIV-1 Drug Resistance Among HIV-1 Positive Women Attending Antenatal Clinic in Kakinada, India | AIDS Res. Hum. Retroviruses (2011) In press | 0 | 47 47PR 47RT |
47 4PR 47RT |
100 | HIVDB |
| Tirado (2003) | COMPARTMENTALIZATION of Drug Resistance-Associated Mutations in a Treatment-Naive HIV-Infected Female | AIDS Res. Hum. Retroviruses 20 (6), 684-686 (2004) | 1e-128 | |
4 2PR 2RT |
0 | Evolution/quasispecies study |
| Tirado (2004) | DIFFERENTIAL Evolution of Cell-Associated Virus in Blood and Genital Tract of HIV-infected Females during HAART | Unpublished | 1e-124 | |
40 20PR 20RT |
0 | Evolution/quasispecies study |
| Tobin (2004) | GENETICS Studies Reveal Two Causes of Low-level Viremias During HAART: Proliferation of HIV-1 Infected Cells and Viral Replication | Unpublished | 2e-52 | |
309 309PR |
0 | Evolution/quasispecies study |
| Tominaga (2007) | A high frequency of defective vif genes in peripheral blood mononuclear cells from HIV type 1-infected individuals | AIDS Res. Hum. Retroviruses 12 (16), 1543-1549 (1996) | 0.02 | |
36 36IN |
0 | Gene fragment(s) |
| Tong (2008) | DRUG-RESISTANT associated mutations in RT of AIDS patients with ART in Hubei, China | Unpublished | 0 | |
2 2RT |
0 | Pending |
| Toni (2005) | PRESENCE of CRF09_cpx and complex CRF02_AG/CRF09_cpx recombinant HIV type 1 strains in Cote d'Ivoire, West Africa | AIDS Res. Hum. Retroviruses 21 (7), 667-672 (2005) | 0 | 6 6PR 6RT 6IN |
6 3PR 6RT 6IN |
100 | HIVDB |
| Toni (2007) | HIV-1 antiretroviral drug resistance in recently infected patients in Abidjan, Cote d Ivoire: a four year survey, 2002-2006 | AIDS Res. Hum. Retroviruses 23 (9), 1155-1160 (2007) | 1e-146 | 102 23PR 79RT |
102 23PR 79RT |
100 | HIVDB |
| Toni (2006) | PRIMARY HIV-1 drug resistance in Abidjan (Cote d'Ivoire): a genotypic and phenotypic study | AIDS 16 (3), 488-491 (2002) | 1e-147 | 159 62PR 97RT |
159 62PR 97RT |
100 | HIVDB |
| Toni (2008) | DETECTION of human immunodeficiency virus (HIV) type 1 M184V and K103N minority variants in patients with primary HIV infection | Antimicrob. Agents Chemother. 53 (4), 1670-1672 (2009) | 0 | |
23 16PR 21RT |
0 | Pending |
| Toni (2003) | PRESENCE of key drug resistance mutations in isolates from untreated patients of Abidjan, Cote d'Ivoire : ANRS 1257 Study | AIDS Res. Hum. Retroviruses 19 (8), 713-717 (2003) | 1e-90 | 196 100PR 96RT |
198 101PR 97RT |
98 | HIVDB |
| Toni (2005) | CHARACTERIZATION of Nevirapine (NVP) Resistance Mutations and HIV Type 1 Subtype in Women from Abidjan (Cote d'Ivoire) After NVP Single-Dose Prophylaxis of HIV Type 1 Mother-to-Child Transmission | AIDS Res. Hum. Retroviruses 21 (12), 1031-1034 (2005) | 1e-145 | 28 28RT |
28 28RT |
100 | HIVDB |
| Toro (2005) | MOLECULAR and epidemiological characteristics of blood-borne virus infections among recent immigrants in Spain | J. Med. Virol. 78 (12), 1599-1608 (2006) | 1e-137 | |
37 36PR 15RT |
0 | Pending |
| Torti (2009) | Heterogeneity and penetration of HIV-1 non-subtype B viruses in Brescia Province (northern Italy): public health implications | Unpublished | 1e-48 | |
1 1PR |
0 | Unpublished |
| Toure-Kane (2001) | FULL-LENGTH genome sequencing of HIV type 1 group O viruses isolated from a heterosexual transmission cluster in Senegal | AIDS Res. Hum. Retroviruses 17 (12), 1211-1216 (2001) | 1e-143 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Tovanabutra (2001) | FIRST CRF01_AE/B recombinant of HIV-1 is found in Thailand | AIDS 15 (8), 1063-1065 (2001) | 1e-161 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Tovanabutra (2003) | A New Circulating Recombinant Form, CRF15_01B, Reinforces the Linkage between IDU and Heterosexual Epidemics in Thailand | AIDS Res. Hum. Retroviruses 19 (7), 561-567 (2003) | 0 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Tovanabutra (2004) | THE Changing Molecular Epidemiology of HIV Type 1 among Northern Thai Drug Users, 1999 to 2002 | AIDS Res. Hum. Retroviruses 20 (5), 465-475 (2004) | 0 | 38 38PR 38RT 38IN |
38 38PR 38RT 38IN |
100 | HIVDB |
| Tovanabutra (2005) | CHARACTERIZATION of Complete HIV Type 1 Genomes from Non-B Subtype Infections in U.S. Military Personnel | AIDS Res. Hum. Retroviruses 21 (5), 424-429 (2005) | 0 | 13 13PR 12RT 13IN |
13 10PR 13RT 13IN |
100 | HIVDB |
| Tovanabutra (2007) | IDENTIFICATION of CRF34_01B, a Second Circulating Recombinant Form Unrelated to and More Complex Than CRF15_01B, among Injecting Drug Users in Northern Thailand | AIDS Res. Hum. Retroviruses 23 (6), 829-833 (2007) | 0 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |
| Tovanabutra (2010) | Evaluation of HIV-1 strains in men having sex with men and in female sex workers in Mombasa, Kenya | AIDS Res. Hum. Retroviruses 26 (2), 123-131 (2010) | 0 | 22 22PR 22RT 22IN |
22 22RT 22IN |
100 | HIVDB |
| Towler (2008) | ANALYSIS of Nevirapine Resistance Mutations in Cloned HIV Type 1 Variants from HIV-Infected Ugandan Infants Using a Single-Step Amplification-Sequencing Method (AmpliSeq) | AIDS Res. Hum. Retroviruses 24 (9), 1209-1213 (2008) | 0 | |
6 3PR 6RT |
0 | Case report(s) / study subset |
| Towler (2010) | Analysis of drug resistance in children receiving antiretroviral therapy for treatment of HIV-1 infection in Uganda | AIDS Res. Hum. Retroviruses 26 (5), 563-568 (2010) | 0 | 94 94PR 94RT |
94 18PR 94RT |
100 | HIVDB |
| Tramuto (2003) | DETECTION of HIV type 1 non-B subtypes in Sicily, Italy | AIDS Res. Hum. Retroviruses 20 (2), 251-254 (2004) | 0 | |
8 8PR 8RT |
0 | ARV Rx and/or other data are N/A |
| Tramuto (2004) | DETECTION of a New 3-Base Pair Insertion Mutation in the Protease Gene of Human Immunodeficiency Virus Type 1 during Highly Active Antiretroviral Therapy (HAART) | AIDS Res. Hum. Retroviruses 21 (5), 420-423 (2005) | 0 | |
27 27PR 27RT |
0 | Pending |
| Tramuto (2007) | GENETIC Diversity of HIV-1 Non-B Strains in Sicily: Evidence of Intersubtype Recombinants by Sequence Analysis of gag, pol, and env Genes | AIDS Res. Hum. Retroviruses 23 (9), 1131-1138 (2007) | 0 | |
6 6RT |
0 | Case report(s) / study subset |
| Tramuto (2011) | How is changing HIV-1 molecular epidemiology in Sicily? The role of immigrant flows and viral dynamic evolution | Unpublished | 0 | |
44 24PR 44RT |
0 | Unpublished |
| Treurnicht (2010) | Adaptive changes in HIV-1 subtype C proteins during early infection are driven by changes in HLA-associated immune pressure | Virology 396 (2), 213-225 (2010) | 0 | |
20 20RT 20IN |
0 | Evolution/quasispecies study |
| Trinh (2009) | Drug resistant mutations of HIV-1 protease and reverse transcriptase genes among antiviral naive treated children in Southern Vietnam | Unpublished | 3e-50 | |
26 26PR |
0 | Pending |
| Trinh (2011) | HIV vaccine development based on Vietnamese HIV-1 strains | Unpublished | 0 | |
2 1PR 2RT 2IN |
0 | Unpublished |
| Triques (2000) | NEAR-FULL-LENGTH genome sequencing of divergent African HIV type 1 subtype F viruses leads to the identification of a new HIV type 1 subtype designated K | AIDS Res. Hum. Retroviruses 16 (2), 139-151 (2000) | 3e-88 | 5 5PR 5RT 5IN |
5 5PR 5RT |
100 | HIVDB |
| Tristem (1991) | NUCLEOTIDE sequence of a Guinea-Bissau-derived human immunodeficiency virus type 2 proviral clone (HIV-2CAM2) | J. Gen. Virol. 72 (PT 3), 721-724 (1991) | 3e-97 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Troyer (2005) | CHANGES in Human Immunodeficiency Virus Type 1 Fitness and Genetic Diversity during Disease Progression | J. Virol. 79 (14), 9006-9018 (2005) | 1e-127 | |
18 18RT |
0 | Pending |
| Troyer (2007) | A radiolabeled oligonucleotide ligation assay demonstrates the high frequency of nevirapine resistance mutations in HIV-1 quasispecies of NVP-treated and untreated mother-infant pairs from Uganda | Unpublished | 1e-138 | |
8 8RT |
0 | Case report(s) / study subset |
| Truong (2006) | ROUTINE surveillance for the detection of acute and recent HIV infections and transmission of antiretroviral resistance | AIDS 20 (17), 2193-2197 (2006) | 3e-51 | 93 93PR 93RT |
93 93PR |
100 | HIVDB |
| Tscherning-Casper (2001) | EVIDENCE of the existence of a new circulating recombinant form of HIV type 1 subtype A/J in Cameroon. The European Network on the Study of In Utero Transmission of HIV-1 | AIDS Res. Hum. Retroviruses 16 (13), 1313-1318 (2000) | 3e-82 | 15 15PR |
15 15PR |
100 | HIVDB |
| Tsui (2005) | DIRECT Submission | Submitted (10-OCT-2005) Department of Medicine, The Chinese | 0 | |
5 1PR 5RT 5IN |
0 | Case report(s) / study subset |
| Tsuiji (2006) | V118 mutations in the transcriptase gene of HIV-1 from drug-naive hemophiliac patients in Japan | Unpublished | 1e-153 | 41 21PR 20RT |
41 21PR 20RT |
100 | HIVDB |
| Tsujimoto (2002) | SEQUENCE of a novel simian immunodeficiency virus from a wild-caught African mandrill | Nature 341 (6242), 539-541 (1989) | 3e-99 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Tu (2009) | Surveillance for human immunodeficiency virus-1 subtypes and drug resistance among volunteer blood donors in Yunnan, China | Unpublished | 3e-51 | 45 45PR 45RT |
45 45PR |
100 | HIVDB |
| Tuaillon (2005) | PHENOTYPIC Susceptibility to Nonnucleoside Inhibitors of Virion-Associated Reverse Transcriptase From Different HIV Types and Groups | J. Acquir. Immune Defic. Syndr. 37 (5), 1543-1549 (2004) | 1e-138 | |
7 7RT |
0 | Case report(s) / study subset |
| Turnbull (2010) | Kinetics of expansion of epitope-specific T cell responses during primary HIV-1 infection | J. Immunol. 182 (11), 7131-7145 (2009) | 0 | |
142 16PR 17RT 142IN |
0 | Evolution/quasispecies study |
| Turner (2003) | NUCLEOTIDE and Amino Acid Polymorphisms at Drug Resistance Sites in Non-B Subtype HIV-1 Variants | Unpublished | 0 | |
4 2PR 2RT |
0 | Case report(s) / study subset |
| Tymchuk (2010) | Baseline HIV Resistance in Malawi | Unpublished | 0 | 20 20PR 20RT |
20 1PR 20RT |
100 | HIVDB |
| Tzitzivacos (2008) | VIRAL genetic determinants of nonprogressive HIV-1 subtype C infection in antiretroviral drug naive children | Unpublished | 0 | |
7 7RT 7IN |
0 | Case report(s) / study subset |
| Umeki-Sakamoto (2010) | Characterization of drug-resistance mutation profile kinetics in HIV-1 with infectious molecular clones | Unpublished | 0 | |
15 4PR 15RT 15IN |
0 | Laboratory/experimental isolate |
| Unger (1993) | SIMIAN immunodeficiency virus (SIVmac) exhibits complex splicing for tat, rev, and env mRNA | Virology 182 (1), 177-185 (1991) | 0.001 | |
1 1IN |
0 | Gene fragment(s) |
| Vachot (2004) | SHORT communication: retrospective study to time the introduction of HIV type 1 non-B subtypes in Lyon, France, using env genes obtained from primary infection samples | AIDS Res. Hum. Retroviruses 20 (7), 687-691 (2004) | 0 | |
4 4RT |
0 | Case report(s) / study subset |
| Vahey (1999) | PERFORMANCE of the Affymetrix GeneChip HIV PRT 440 platform for antiretroviral drug resistance genotyping of human immunodeficiency virus type 1 clades and viral isolates with length polymorphisms | J. Clin. Microbiol. 37 (8), 2533-2537 (1999) | 1e-111 | 35 35PR 35RT |
35 35PR 35RT |
100 | HIVDB |
| Vaillancourt (1999) | THE HIV type 1 protease inhibitor saquinavir can select for multiple mutations that confer increasing resistance | AIDS Res. Hum. Retroviruses 15 (4), 355-363 (1999) | 1e-128 | 108 108PR |
135 135PR |
80 | HIVDB |
| Vallari (2010) | Four new HIV-1 group N isolates from Cameroon: Prevalence continues to be low | AIDS Res. Hum. Retroviruses 26 (1), 109-115 (2010) | 0 | 4 3PR 3RT 4IN |
4 3RT 4IN |
100 | HIVDB |
| Vallari (2011) | Confirmation of Putative HIV-1 Group P in Cameroon | J. Virol. 85 (3), 1403-1407 (2011) | 0 | 1 1PR 1RT 1IN |
2 1RT 2IN |
50 | HIVDB |
| Valle-Bahena (2004) | FREQUENCY of Protease and Reverse Transcriptase Drug Resistance Mutations in Naive HIV-Infected Patients | Arch. Med. Res. 37 (8), 1022-1027 (2006) | 0 | 39 33PR 36RT |
39 33PR 36RT |
100 | HIVDB |
| Vallejo (2001) | TROPISM, coreceptor use, and phylogenetic analysis of both the V3 loop and the protease gene of three novel HIV-1 group O isolates | J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 18 (5), 417 | 5e-10 | 3 3PR |
3 3PR |
100 | HIVDB |
| van Beveren (1995) | APPENDIX B: ARV-2 genome | (in) Weiss,R.L., Teich,N., Varmus,H. and Coffin,J. (Eds.); R | 1e-163 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| van Beveren (1999) | APPENDIX B: HTLV-3/LAV genome | (in) Weiss,R.L., Teich,N., Varmus,H. and Coffin,J. (Eds.); R | 1e-164 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| van der Ende (2000) | ANTIVIRAL resistance of biological HIV-2 from Netherlands clones obtained from individuals on nucleoside reverse transcriptase inhibitor therapy | Unpublished | 0.001 | 6 6RT |
6 6RT |
100 | HIVDB |
| van der Hoek (2005) | INCREASED multinucleoside drug resistance and decreased replicative capacity of a human immunodeficiency virus type 1 variant with an 8-amino-Acid insert in the reverse transcriptase | J. Virol. 79 (6), 3536-3543 (2005) | 1e-169 | |
13 13PR 13RT |
0 | Pending |
| van der Hoek (2006) | CHARACTERIZATION of An HIV-1 Group M Variant That Is Distinct from The Known Subtypes | AIDS Res. Hum. Retroviruses 23 (3), 466-470 (2007) | 0 | 4 4PR 4RT 4IN |
4 1PR 4RT 4IN |
100 | HIVDB |
| van Hal (2009) | HIV-1 integrase polymorphisms are associated with prior antiretroviral drug exposure | Retrovirology 6, 12 (2009) | 1e-168 | 133 133IN |
133 133IN |
100 | HIVDB |
| van Harmelen (2002) | CHARACTERIZATION of full-length HIV type 1 subtype C sequences from South Africa | AIDS Res. Hum. Retroviruses 17 (16), 1527-1531 (2001) | 1e-163 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Van Heuverswyn (2006) | HUMAN immunodeficiency viruses: SIV infection in wild gorillas | Nature 444 (7116), 164 (2006) | 1e-147 | |
4 1RT 4IN |
0 | Pending |
| Van Heuverswyn (2008) | GENETIC diversity and phylogeographic clustering of SIVcpzPtt in wild chimpanzees in Cameroon | Virology 368 (1), 155-171 (2007) | 0 | |
2 2RT 2IN |
0 | Pending |
| Van Laethem (2000) | PATIENT HIV-1 strains carrying the multiple nucleoside resistance mutations are cross-resistant to abacavir | AIDS 14 (4), 469-471 (2000) | 1e-86 | 5 5RT |
5 5RT |
100 | HIVDB |
| Van Laethem (2001) | MUTATIONS in the non-nucleoside binding-pocket interfere with the multi-nucleoside resistance phenotype | AIDS 15 (5), 553-561 (2001) | 3e-90 | |
10 10RT |
0 | Evolution/quasispecies study |
| Van Laethem (2002) | MULTINUCLEOSIDE resistant HIV-1 strains | Unpublished | 1e-74 | |
6 6RT |
0 | Pending |
| Van Laethem (2005) | A genotypic resistance assay for the detection of drug resistance in the human immunodeficiency virus type 1 envelope gene | J. Virol. Methods 123 (1), 25-34 (2005) | 0 | |
8 5PR 8RT |
0 | Case report(s) / study subset |
| Van Laethem (2008) | A genotypic assay for the amplification and sequencing of integrase from diverse HIV-1 group M subtypes | J. Virol. Methods 153 (2), 176-181 (2008) | 1e-167 | |
70 70IN |
0 | Pending |
| van Vaerenbergh (2002) | INITIATION of HAART in drug-naive HIV-1 infected patients prevents viral breakthrough for a median period of 35.5 months in 60% of the patients | Unpublished | 1e-135 | |
69 34PR 35RT |
0 | Pending |
| Van Zyl (2008) | ANTIRETROVIRAL resistance mutations in patients with prolonged failure on antiretroviral therapy in Tygerberg Family Clinic, Western Cape, South Africa: An observational study using statistical models | Unpublished | 1e-152 | |
75 25PR 68RT |
0 | Pending |
| Vandamme (1994) | CHARACTERIZATION of HIV-1 strains isolated from patients treated with TIBO R82913 | AIDS Res. Hum. Retroviruses 10 (1), 39-46 (1994) | 2e-57 | 6 6RT |
7 7RT |
85 | HIVDB |
| Vanden Haesevelde (1994) | GENOMIC cloning and complete sequence analysis of a highly divergent African human immunodeficiency virus isolate | J. Virol. 68 (3), 1586-1596 (1994) | 1e-142 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Vanden Haesevelde (1996) | SEQUENCE analysis of a highly divergent HIV-1-related lentivirus isolated from a wild captured chimpanzee | Virology 221 (2), 346-350 (1996) | 1e-138 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| VanRompay (1996) | ZIDOVUDINE-RESISTANT simian immunodeficiency virus | Unpublished | 1.1 | 1 1PR 1RT |
1 1RT |
100 | HIVDB |
| Varghese (2010) | HIV-1 Integrase Sequence Variability in Antiretroviral Naive Patients and in Triple-Class Experienced Patients Subsequently Treated with Raltegravir | AIDS Res. Hum. Retroviruses (2010) In press | 1e-167 | |
150 150IN |
0 | Pending |
| Vartanian (2001) | SUSTAINED G-->A hypermutation during reverse transcription of an entire human immunodeficiency virus type 1 strain Vau group O genome | J. Gen. Virol. 83 (Pt 4), 801-805 (2002) | 1e-145 | |
2 2PR 2RT 2IN |
0 | Laboratory/experimental isolate |
| Vatteroni (2008) | HIV-1 subtypes | Unpublished | 0 | |
3 3RT |
0 | Case report(s) / study subset |
| Vaughan (2003) | CHARACTERIZATION of HIV-1 clades in the Caribbean using pol gene sequences | Unpublished | 1e-139 | 71 71PR 71RT |
71 71PR 71RT |
100 | HIVDB |
| Vazquez de Parga (2008) | ANALYSIS of drug resistance-associated mutations in treatment-naive individuals infected with different genetic forms of HIV-1 circulating in countries of the former Soviet Union | J. Med. Virol. 77 (3), 337-344 (2005) | 0 | 230 230PR 230RT |
230 129PR 213RT |
100 | HIVDB |
| Vazquez-Valls (2010) | Molecular epidemiology of HIV type 1 in Mexico: emergence of BG and BF intersubtype recombinants | AIDS Res. Hum. Retroviruses 26 (7), 777-781 (2010) | 1e-50 | |
18 18PR |
0 | Pending |
| Venturi (1999) | GENOTYPIC resistance to zidovudine as a predictor of failure of subsequent therapy with human immunodeficiency virus type-1 nucleoside reverse-transcriptase inhibitors | Eur. J. Clin. Microbiol. Infect. Dis. 18 (4), 274-282 (1999) | 1e-98 | 78 78RT |
78 78RT |
100 | HIVDB |
| Venturi (2000) | ANTIRETROVIRAL resistance mutations in human immunodeficiency virus type 1 reverse transcriptase and protease from paired cerebrospinal fluid and plasma samples | J. Infect. Dis. 181 (2), 740-745 (2000) | 1e-130 | 68 26PR 42RT |
68 26PR 42RT |
100 | HIVDB |
| Venturi (2002) | DIVERGENT distribution of HIV-1 drug-resistant variants on and off antiretroviral therapy | Unpublished | 1e-129 | 67 66PR 66RT |
270 270PR 270RT |
24 | HIVDB |
| Veras (2006) | HIV Type 1 Genetic Variability in Central Brazil | AIDS Res. Hum. Retroviruses 23 (12), 1481-1489 (2007) | 2e-52 | |
14 14PR |
0 | Pending |
| Vercauteren (2008) | PREVALENCE and Epidemiology of HIV Type 1 Drug Resistance among Newly Diagnosed Therapy-Naive Patients in Belgium from 2003 to 2006 | AIDS Res. Hum. Retroviruses (2008) In press | 0 | 298 298PR 298RT |
298 174PR 298RT 7IN |
100 | HIVDB |
| Vercauteren (2009) | Transmission of drug-resistant HIV-1 is stabilizing in Europe | J. Infect. Dis. 200 (10), 1503-1508 (2009) | 0 | 1741 1741PR 1740RT |
1741 876PR 1459RT |
100 | HIVDB |
| Vercauteren (2009) | Transmission of drug-resistant HIV-1 is stabilizing in Europe | J. Infect. Dis. 200 (10), 1503-1508 (2009) | 2e-46 | 1 1PR 1RT |
1 1PR |
100 | HIVDB |
| Vergani (2007) | EVOLUTION of the HIV-1 protease region in heavily pretreated HIV-1 infected patients receiving Atazanavir | J. Clin. Virol. 41 (2), 154-159 (2008) | 1e-141 | |
24 5PR 24RT |
0 | Pending |
| Vergne (2000) | GENETIC diversity of protease and reverse transcriptase sequences in non-subtype-B human immunodeficiency virus type 1 strains: evidence of many minor drug resistance mutations in treatment-naive patients | J. Clin. Microbiol. 38 (11), 3919-3925 (2000) | 1e-135 | 125 125PR 125RT |
125 125PR 125RT |
100 | HIVDB |
| Vergne (2002) | RESISTANCE to antiretroviral treatment in Gabon: need for implementation of guidelines on antiretroviral therapy use and HIV-1 drug resistance monitoring in developing countries | J. Acquir. Immune Defic. Syndr. 29 (2), 165-168 (2002) | 1e-121 | 32 32PR 31RT |
32 32PR 32RT |
100 | HIVDB |
| Vergne (2003) | LOW rate of genotypic HIV-1 drug-resistant strains in the Senegalese government initiative of access to antiretroviral therapy | AIDS 17 SUPPL 3, S31-S38 (2003) | 0 | 45 45PR 45RT |
45 45PR 45RT |
100 | HIVDB |
| Vergne (2006) | NATURAL polymorphism in protease and reverse transcriptase genes and in vitro antiretroviral drug susceptibilities of non-B HIV-1 strains from treatment-naive patients | J. Clin. Virol. 36 (1), 43-49 (2006) | 0 | 19 19PR 19RT |
19 10PR 19RT |
100 | HIVDB |
| Vergne (2009) | HIV-1 drug-resistance mutations among newly diagnosed patients before scaling-up programmes in Burkina Faso and Cameroon | Antivir. Ther. (Lond.) 11 (5), 575-579 (2006) | 0 | 195 195PR 195RT |
195 1PR 195RT |
100 | HIVDB |
| Verhofstede (2003) | DRUG-RESISTANT Variants That Evolve During Nonsuppressive Therapy Persist in HIV-1-Infected Peripheral Blood Mononuclear Cells After Long-Term Highly Active Antiretroviral Therapy | J. Acquir. Immune Defic. Syndr. 35 (5), 473-483 (2004) | 1e-126 | |
319 156PR 182RT |
0 | Evolution/quasispecies study |
| Verhofstede (2008) | Effectiveness of antiretroviral therapy and development of drug resistance in HIV-1 infected patients in Mombasa, Kenya | Unpublished | 2e-49 | 4 4PR |
4 4PR |
100 | HIVDB |
| Verschoor (2003) | A novel simian immunodeficiency virus isolated from a Schmidt's guenon (Cercopithecus ascanius schmidti) | J. Gen. Virol. 85 (PT 1), 21-24 (2004) | 1e-144 | 1 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Vessiere (2006) | HIV-1 pol gene polymorphism and antiretroviral resistance mutations in drug naive pregnant women, in Yaounde, Cameroon | Unpublished | 1e-147 | 140 57PR 83RT |
140 57PR 83RT |
100 | HIVDB |
| Vessiere (2009) | First evidence of a HIV-1 M/O recombinant form circulating outside Cameroon | AIDS. 2010 Apr 24;24(7):1079-82. | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Viani (2006) | PREVALENCE of Primary HIV-1 Drug Resistance among Recently Infected Adolescents: A Multicenter Adolescent Medicine Trials Network for HIV/AIDS Interventions Study | J. Infect. Dis. 194 (11), 1505-1509 (2006) | 1e-174 | 55 55PR 55RT |
55 55PR 55RT |
100 | HIVDB |
| Vicente (2001) | GENETIC variability of HIV-1 protease from Nigeria and correlation with protease inhibitors drug resistance | Virus Genes 22 (2), 181-186 (2001) | 4e-81 | 10 10PR |
10 10PR |
100 | HIVDB |
| Vicente (2001) | THE HIV epidemic in the Amazon Basin is driven by prototypic and recombinant HIV-1 subtypes B and F | J. Acquir. Immune Defic. Syndr. 23 (4), 327-331 (2000) | 1e-112 | 10 10PR |
10 10PR |
100 | HIVDB |
| Vicenti (2007) | USE of peripheral blood DNA for genotype antiretroviral resistance testing in drug-naive HIV-infected subjects | Clin. Infect. Dis. 44 (12), 1657-1661 (2007) | 1e-142 | 526 256PR 270RT |
526 256PR 270RT |
100 | HIVDB |
| Vicenti (2007) | Use of peripheral blood DNA for genotype antiretroviral resistance testing in drug-naive HIV-infected subjects | Clin. Infect. Dis. 44 (12), 1657-1661 (2007) | 8e-48 | 1 1PR |
1 1PR |
100 | HIVDB |
| Vidal (2002) | GENOTYPIC and phenotypic resistance patterns in early stage HIV patients failing initial therapy with stavudine, didanosine and nevirapine | Unpublished | 1e-133 | 51 25PR 26RT |
51 25PR 26RT |
100 | HIVDB |
| Vidal (2003) | DIRECT Submission | Submitted (03-JUN-2002) Vidal N., UR 36, I.R.D, BP 64501, 34 | 0 | 4 4PR 4RT 4IN |
4 4PR 4RT 3IN |
100 | HIVDB |
| Vidal (1998) | GENETIC follow-up of SIVagm in its natural host Cercopithecus aethiops sabaeus, and experimental infection of Erythrocebus patas | Unpublished | 3e-41 | |
8 8IN |
0 | Gene fragment(s) |
| Vidal (2001) | IDENTIFICATION of a complex env subtype E HIV type 1 virus from the democratic republic of congo, recombinant with A, G, H, J, K, and unknown subtypes | AIDS Res. Hum. Retroviruses 16 (18), 2059-2064 (2000) | 1e-117 | 1 1PR 1RT 1IN |
3 1PR 2RT 1IN |
33 | HIVDB |
| Vidal (2006) | IDENTIFICATION and molecular characterization of subsubtype A4 in central Africa | AIDS Res. Hum. Retroviruses 22 (2), 182-187 (2006) | 0 | 3 3PR 3RT 3IN |
3 2PR 3RT 3IN |
100 | HIVDB |
| Vidal (2006) | HIV type 1 pol gene diversity and antiretroviral drug resistance mutations in the Democratic Republic of Congo (DRC) | AIDS Res. Hum. Retroviruses 22 (2), 202-206 (2006) | 0 | 70 70PR 70RT |
70 35PR 70RT |
100 | HIVDB |
| Vidal (2007) | HIV Type 1 Diversity and Antiretroviral Drug Resistance Mutations in Burundi | AIDS Res. Hum. Retroviruses 23 (1), 175-180 (2007) | 0 | 105 105PR 105RT |
105 42PR 105RT |
100 | HIVDB |
| Vidal (2007) | CHARACTERIZATION of an Old Complex Circulating Recombinant Form, CRF27_cpx, Originating from the Democratic Republic of Congo (DRC) and Circulating in France | AIDS Res. Hum. Retroviruses 24 (2), 315-321 (2008) | 0 | 2 2PR 2RT 2IN |
3 2RT 3IN |
66 | HIVDB |
| Vignoles (2006) | HIGH frequency of primary mutations associated with antiretroviral drug resistance in recently diagnosed HIV-infected children | Antivir. Ther. (Lond.) 12 (7), 1133-1137 (2007) | 0 | |
67 47PR 67RT |
0 | Pending |
| Villena (2007) | RELATIVE Fitness and Replication Capacity of a Multinucleoside Analogue-Resistant Clinical Human Immunodeficiency Virus Type 1 Isolate with a Deletion of Codon 69 in the Reverse Transcriptase Coding Region | J. Virol. 81 (9), 4713-4721 (2007) | 0 | |
4 4RT |
0 | Case report(s) / study subset |
| Vinner (2010) | Sequence analysis of near full-length Human immunodeficiency virus type 1 sequences from Guinea-Bissau; selection of vaccine epitopes relevant in both West African and European countries | Unpublished | 0 | |
3 3RT 3IN |
0 | Unpublished |
| Vinogradova (2010) | Short communication: Molecular epidemiology of HIV type 1 in the Republic of Dagestan, Russian Federation: virtually uniform circulation of subtype A, former Soviet Union variant, with predominance of the V77I(PR) subvariant | AIDS Res. Hum. Retroviruses 26 (4), 395-400 (2010) | 0 | 39 39PR 39RT |
39 16PR 33RT |
100 | HIVDB |
| Vinoles (2005) | SEROINCIDENCE AND PHYLOGENY OF HUMAN IMMUNODEFICIENCY VIRUS INFECTIONS IN A COHORT OF COMMERCIAL SEX WORKERS IN MONTEVIDEO, URUGUAY | Am. J. Trop. Med. Hyg. 72 (4), 495-500 (2005) | 0 | 5 5PR 5RT 4IN |
5 4PR 5RT 4IN |
100 | HIVDB |
| Viputtijul (2002) | HETEROSEXUALLY Acquired CRF01_AE/B Recombinant HIV Type 1 Found in Thailand | AIDS Res. Hum. Retroviruses 18 (16), 1235-1237 (2002) | 1e-157 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Visawapoka (2006) | CIRCULATING and Unique Recombinant Forms of HIV Type 1 Containing Subsubtype A2 | AIDS Res. Hum. Retroviruses 22 (7), 695-702 (2006) | 0 | 4 4PR 4RT 4IN |
4 1PR 4RT 4IN |
100 | HIVDB |
| von Truchsess (2006) | THE first B/G intersubtype recombinant form of human immunodeficiency virus type 1 (HIV-1) identified in Germany was undetected or underquantitated by some commercial viral load assays | J. Med. Virol. 78 (3), 311-317 (2006) | 1e-163 | |
1 1IN |
0 | Case report(s) / study subset |
| von Wyl (2007) | EMERGENCE of HIV-1 drug resistance in previously untreated patients initiating combination antiretroviral treatment: a comparison of different regimen types | Arch. Intern. Med. 167 (16), 1782-1790 (2007) | 6e-53 | 184 184PR 184RT |
184 184PR |
100 | HIVDB |
| von Wyl (2010) | Epidemiological and biological evidence for a compensatory effect of connection domain mutation N348I on M184V in HIV-1 reverse transcriptase | J. Infect. Dis. 201 (7), 1054-1062 (2010) | 0 | |
57 33PR 57RT |
0 | Pending |
| von Wyl (2010) | HIV-1 reverse transcriptase connection domain mutations: dynamics of emergence and implications for success of combination antiretroviral therapy | Clin. Infect. Dis. 51 (5), 620-628 (2010) | 0 | |
11 11RT |
0 | Pending |
| Wain-Hobson (1985) | NUCLEOTIDE sequence of the AIDS virus, LAV | Cell 40 (1), 9-17 (1985) | 1e-164 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Wallis (2010) | Case report of the rare deletion at codon 69 of reverse transcriptase in a South African HIV-1 subtype C infected patient | Virus Genes 41 (3), 358-360 (2010) | 1e-158 | 2 2PR 2RT |
3 3PR 3RT |
66 | HIVDB |
| Walter (2000) | PHENOTYPIC HIV-1 resistance correlates with treatment outcome of nelfinavir salvage therapy | Antivir. Ther. (Lond.) 5 (4), 249-256 (2000) | 1e-123 | 19 19PR |
19 19PR |
100 | HIVDB |
| Wang (2004) | FIRST demonstration of a lack of viral sequence evolution in a nonprogressor, defining replication-incompetent HIV-1 infection | Virology 312 (1), 135-150 (2003) | 0 | |
4 4PR 4RT 4IN |
0 | Case report(s) / study subset |
| Wang (2005) | HIV-1 genotypic drug resistance variants in antiretroviral treatment naive patients in southern China | Cell Res. 2005 Nov-Dec;15(11-12):843-9. | 1e-149 | |
38 32PR 31RT |
0 | Pending |
| Wang (2001) | GENOTYPING analysis of HIV-1 isolate protease from VGH Taipei | Unpublished | 1e-121 | |
15 15PR |
0 | Unpublished |
| Wang (2008) | IDENTIFICATION of Subtype B, Multiple Circulating Recombinant Forms and Unique Recombinants of HIV Type 1 in an MSM Cohort in China | AIDS Res. Hum. Retroviruses 24 (10), 1245-1254 (2008) | 1e-171 | |
36 29PR 28RT |
0 | Pending |
| Wang (2011) | Near Full-Length Sequence Analysis of Two New HIV Type 1 Unique (CRF01_AE/B) Recombinant Forms among MSM in China | Unpublished | 0 | |
2 1PR 2RT 2IN |
0 | Unpublished |
| Wang (2011) | The Dynamic Face of HIV-1 Subtypes Among Men who Have Sex with Men in Beijing, China | Curr. HIV Res. (2011) In press | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Wang (2009) | Protective HLA class I alleles that restrict acute-phase CD8+ T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1 | J. Virol. 83 (4), 1845-1855 (2009) | 0 | |
91 61PR 91RT 91IN |
0 | Pending |
| Wang (2000) | MOLECULAR evidence for drug-induced compartmentalizaion of HIV-1 quasispecies in a patient with periodic changes to the HAART regimens | AIDS (2001) In press | 1e-118 | |
30 16PR 14RT |
0 | Evolution/quasispecies study |
| Wang (2008) | CONSTRUCTION and Characterization of a Full-Length Infectious Molecular Clone from the HIV Type 1 Subtype Thai-B Isolated in Henan Province, China | AIDS Res. Hum. Retroviruses 24 (2), 251-257 (2008) | 0 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Warachit (2007) | ABERRANT life cycle of human immunodeficiency virus type 1 CRF15_01B-like clinical isolates from Thailand in human CD4+ T-cell lines | Microbes Infect. 9 (4), 449-459 (2007) | 0 | 1 1PR 1RT 1IN |
2 2PR 2RT 2IN |
50 | Case report(s) / study subset |
| Warachit (2007) | DIRECT Submission | Submitted (22-DEC-2006) Virology, Research Institute of Micr | 1e-163 | |
4 4IN |
0 | Pending |
| Warren (1992) | COMPARATIVE purification of recombinant HIV-1 and HIV-2 reverse transcriptase: preparation of heterodimeric enzyme devoid of unprocessed gene product | Protein Expr. Purif. 3 (6), 479-487 (1992) | 4.2 | |
1 1RT |
0 | HIVDB |
| Watanaveeradej (2003) | DIRECT Submission | Submitted (26-MAR-2003) Threat Assessment, U.S. Military HIV | 0 | 1 1PR 1RT 1IN |
1 1PR 1RT 1IN |
100 | HIVDB |
| Watanaveeradej (2006) | MOLECULAR Epidemiology of HIV-1 in Preparation for a Phase III Prime-boost Vaccine Trial in Thailand and a New Approach to HIV-1 Genotyping | Unpublished | 0 | 27 27PR 26RT 27IN |
27 20PR 27RT 27IN |
100 | HIVDB |
| Watkins (2003) | SELECTION of high-level resistance to human immunodeficiency virus type 1 protease inhibitors | Antimicrob. Agents Chemother. 47 (2), 759-769 (2003) | 2e-53 | |
116 116PR |
0 | Laboratory/experimental isolate |
| Weber (2002) | HUMAN immunodeficiency virus type 1 fitness evolution under a protease inhibitor-based therapy depends on the basal genotypic context of the virus and correlates with a diverse virologic and immunologic response | Unpublished | 1e-133 | 25 25PR 25RT |
25 25PR 25RT |
100 | HIVDB |
| Weber (2005) | DIMINISHED Replicative Fitness of Primary Human Immunodeficiency Virus Type 1 Isolates Harboring the K65R Mutation | J. Clin. Microbiol. 43 (3), 1395-1400 (2005) | 1e-171 | 10 10PR 10RT |
10 10PR 10RT |
100 | HIVDB |
| Wei (2004) | BIASED G-to-A hypermutation in HIV-1 proviral DNA from a long-term non-progressor | AIDS 18 (13), 1863-1865 (2004) | 0 | |
1 1PR 1RT 1IN |
0 | Case report(s) / study subset |
| Weidle (2000) | PRESENCE of human immunodeficiency virus (HIV) type 1, group M, non-B subtypes, Bronx, New York: a sentinel site for monitoring HIV genetic diversity in the United States | J. Infect. Dis. 181 (2), 470-475 (2000) | 1e-118 | 6 6PR |
6 6PR |
100 | HIVDB |
| Weidle (2002) | RESISTANCE to antiretroviral therapy among patients in Uganda | J. Acquir. Immune Defic. Syndr. 26 (5), 495-500 (2001) | 1e-106 | 15 15PR |
15 15PR |
100 | HIVDB |
| Weidt (1992) | CHARACTERIZATION of a new German HIV-1 isolate: HIV-1NH5 | Unpublished (1992) | 5e-89 | |
2 1RT 1IN |
0 | Case report(s) / study subset |
| Weinstock (2004) | THE Epidemiology of Antiretroviral Drug Resistance among Drug-Naive HIV-1-Infected Persons in 10 US Cities | J. Infect. Dis. 189 (12), 2174-2180 (2004) | 1e-146 | |
149 148PR 149RT |
0 | Case report(s) / study subset |
| Whitcomb (2006) | DIRECT Submission | Submitted (09-SEP-2006) Monogram Biosciences, 345 Oyster Poi | 1e-167 | |
3 2PR 3RT |
0 | Laboratory/experimental isolate |
| Wichukchinda (2005) | HETEROSEXUAL Transmission of Novel CRF01_AE and Subtype B Recombinant Forms of HIV Type 1 in Northern Thailand | AIDS Res. Hum. Retroviruses 21 (8), 734-738 (2005) | 0 | |
4 4PR 3RT |
0 | Case report(s) / study subset |
| Wieland (1994) | IN vivo genetic variability of the HIV-1 vif gene | Virology 203 (1), 43-51 (1994) | 0.02 | |
52 52IN |
0 | Gene fragment(s) |
| Wieland (1997) | DIVERSITY of the vif gene of human immunodeficiency virus type 1 in Uganda | J. Gen. Virol. 78 (PT 2), 393-400 (1997) | 0.02 | |
15 15IN |
0 | Gene fragment(s) |
| Wilbe (2002) | IDENTIFICATION of Two CRF11-cpx Genomes and Two Preliminary Representatives of a New Circulating Recombinant Form (CRF13-cpx) of HIV Type 1 in Cameroon | AIDS Res. Hum. Retroviruses 18 (12), 849-856 (2002) | 1e-72 | 4 4PR 4RT 4IN |
4 4PR 4RT |
100 | HIVDB |
| Wilbe (2003) | CHARACTERIZATION of novel recombinant HIV-1 genomes using the branching index | Virology 316 (1), 116-125 (2003) | 0 | 4 4PR 4RT 4IN |
4 4PR 4RT 4IN |
100 | HIVDB |
| Wildemann (1993) | IN vivo occurance of drug resistance mutations under prolonged zidovudine treatment in HIV-1 infected patients with asymptomatic and advanced disease | Unpublished | 9e-94 | 54 54RT |
80 80RT |
67 | Case report(s) / study subset |
| Wilkinson (2009) | Molecular characterization of non-subtype C and recombinant HIV-1 viruses from Cape Town, South Africa | Infect Genet Evol. 2009 Sep;9(5):840-6. Epub 2009 May 14. | 0 | |
11 2PR 4RT 11IN |
0 | Pending |
| Willey (1996) | IDENTIFICATION of conserved and divergent domains within the envelope gene of the acquired immunodeficiency syndrome retrovirus | Proc. Natl. Acad. Sci. U.S.A. 83 (14), 5038-5042 (1986) | 1e-128 | |
1 1PR 1RT |
0 | HIVDB |
| Williamson (2003) | CHARACTERIZATION and Selection of HIV-1 Subtype C Isolates For Use in Vaccine Development | AIDS Res. Hum. Retroviruses 19 (2), 133-144 (2003) | 1e-163 | 28 1PR 28RT 1IN |
28 1PR 28RT 1IN |
100 | HIVDB |
| Wilson (1999) | FREQUENT detection of escape from cytotoxic T-lymphocyte recognition in perinatal human immunodeficiency virus (HIV) type 1 transmission: the ariel project for the prevention of transmission of HIV from mother to infant | J. Virol. 73 (5), 3975-3985 (1999) | 1e-127 | |
112 112RT |
0 | Evolution/quasispecies study |
| Winslow (1995) | LIMITED sequence diversity of the HIV type 1 protease gene from clinical isolates and in vitro susceptibility to HIV protease inhibitors | AIDS Res. Hum. Retroviruses 11 (1), 107-113 (1995) | 1e-127 | 13 13PR |
21 21PR |
61 | HIVDB |
| Winters (1997) | HUMAN immunodeficiency virus type 1 reverse transcriptase genotype and drug susceptibility changes in infected individuals receiving dideoxyinosine monotherapy for 1 to 2 years | Antimicrob. Agents Chemother. 41 (4), 757-762 (1997) | 1e-98 | 44 44RT |
44 44RT |
100 | HIVDB |
| Winters (1998) | A 6-basepair insert in the reverse transcriptase gene of human immunodeficiency virus type 1 confers resistance to multiple nucleoside inhibitors | J. Clin. Invest. 102 (10), 1769-1775 (1998) | 1e-124 | 10 9PR 10RT |
14 12PR 14RT |
71 | HIVDB |
| Winters (2004) | GENOTYPIC, phenotypic, and modeling studies of a deletion in the beta3-beta4 region of the human immunodeficiency virus type 1 reverse transcriptase gene that is associated with resistance to nucleoside reverse transcriptase inhibitors | J. Virol. 74 (22), 10707-10713 (2000) | 1e-166 | 7 7RT |
7 7RT |
100 | HIVDB |
| Winters (2005) | NEW Two-Amino Acid Insertion Near Codon 70 of the HIV Type 1 Protease Gene | AIDS Res. Hum. Retroviruses 21 (4), 311-313 (2005) | 0 | |
1 1RT |
0 | Pending |
| Wittkop (2010) | Virological and immunological response in HIV-1-infected patients with multiple treatment failures receiving raltegravir and optimized background therapy, ANRS CO3 Aquitaine Cohort | J. Antimicrob. Chemother. 63 (6), 1251-1255 (2009) | 1e-167 | 34 34IN |
34 34IN |
100 | HIVDB |
| Wolinsky (2007) | COMPLEX Pathways of HIV Immune Escape | Unpublished | 1e-175 | |
26 26PR 26RT |
0 | Case report(s) / study subset |
| Womack (2001) | IDENTIFICATION of non-B human immunodeficiency virus type 1 subtypes in rural Georgia | J. Infect. Dis. 183 (1), 138-142 (2001) | 9e-57 | |
2 2RT |
0 | Case report(s) / study subset |
| Wong (1997) | DIRECT Submission | Submitted (02-SEP-1996) Department of Medicine, University o | 1e-101 | |
314 314RT |
0 | Gene fragment(s) |
| Wong (1997) | RECOVERY of replication-competent HIV despite prolonged suppression of plasma viremia | Science 278 (5341), 1291-1295 (1997) | 1e-126 | |
14 14PR 14RT |
0 | Evolution/quasispecies study |
| Wong-Staal (1993) | COMPLETE nucleotide sequence of the AIDS virus, HTLV-III | Nature 313 (6000), 277-284 (1985) | 1e-163 | 1 1PR 1RT 1IN |
4 4PR 4RT 1IN |
25 | Laboratory/experimental isolate |
| Worobey (2010) | Island biogeography reveals the deep history of SIV | Science 329 (5998), 1487 (2010) | 2e-68 | 22 22IN |
22 22IN |
100 | HIVDB |
| Wright (2010) | Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: associations with HLA type and clinical parameters | J. Virol. 84 (20), 10820-10831 (2010) | 3e-50 | 179 179PR |
179 179PR |
100 | HIVDB |
| Wright (2010) | Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: associations with HLA type and clinical parameters | J. Virol. 84 (20), 10820-10831 (2010) | 5e-49 | 4 4PR |
4 4PR |
100 | HIVDB |
| Wright (2011) | Influence of Gag-Protease-Mediated Replication Capacity on Disease Progression in Individuals Recently Infected with HIV-1 Subtype C | J. Virol. 85 (8), 3996-4006 (2011) | 2e-50 | 14 14PR |
14 14PR |
100 | HIVDB |
| Wright (2011) | Influence of Gag-Protease-Mediated Replication Capacity on Disease Progression in Individuals Recently Infected with HIV-1 Subtype C | J. Virol. 85 (8), 3996-4006 (2011) | 3e-48 | 2 2PR |
2 2PR |
100 | HIVDB |
| Wu (2009) | Construction and application of an infectious molecular clone of T-tropic and subtype B-Thai HIV-1 virus | Unpublished | 0 | |
1 1PR 1RT 1IN |
0 | Unpublished |
| Wu (2010) | Construction and characterization of a full-length infectious clone from a fast replicating, X4-tropic HIV-1 subtype Thai- B isolate | Unpublished | 0 | |
3 3PR 3RT 3IN |
0 | Unpublished |
| Wu (2002) | MUTATION Patterns and Structural Correlates in Human Immunodeficiency Virus Type 1 Protease Following Different Protease Inhibitor Treatments | J. Virol. 77 (8), 4836-4847 (2003) | 1e-133 | 216 216PR |
216 216PR |
100 | HIVDB |
| Xiang (2005) | HIV type 2 pathogenicity is not related to subtype in rural Guinea Bissau | AIDS Res. Hum. Retroviruses 13 (6), 501-505 (1997) | 6e-43 | |
128 128IN |
0 | Pending |
| Xu (2007) | GENETIC Diversity of Integrase (IN) Sequences in Antiretroviral Treatment-Naive and Treatment-Experienced HIV Type 2 Patients | AIDS Res. Hum. Retroviruses 24 (7), 1003-1007 (2008) | 1e-101 | |
11 11IN |
0 | Pending |
| Xu (2009) | Dynamics of raltegravir resistance profile in an HIV-2 infected patient | Unpublished | 1e-100 | |
216 216IN |
0 | Evolution/quasispecies study |
| Xu (2010) | Development and evaluation of national reference panel for HIV-1 genotypic resistance assay on HIV-1 protease and reverse transcriptase in China | Mol Diagn Ther. 14(1):31-41 (2010) | 1e-166 | |
7 4PR 4RT |
0 | Pending |
| Yahi (2001) | USE of drug resistance sequence data for the systematic detection of non-B human immunodeficiency virus type 1 (HIV-1) subtypes: how to create a sentinel site for monitoring the genetic diversity of HIV-1 at a country scale | J. Infect. Dis. 183 (9), 1311-1317 (2001) | 1e-101 | 135 68PR 67RT |
135 68PR 67RT |
100 | HIVDB |
| Yamada (2000) | COMPARISON of proviral accessory genes between long-term nonprogressors and progressors of human immunodeficiency virus type 1 infection | Arch. Virol. 145 (5), 1021-1027 (2000) | 0.011 | |
49 49IN |
0 | Gene fragment(s) |
| Yamaguchi (1995) | CLINICAL isolates of HIV-1 contain few pre-existing proteinase inhibitor resistance-conferring mutations | Biochim. Biophys. Acta 1253 (2), 136-140 (1995) | 1e-135 | 22 22PR |
28 28PR |
78 | HIVDB |
| Yamaguchi (2002) | EVALUATION of HIV type 1 group O isolates: identification of five phylogenetic clusters | AIDS Res. Hum. Retroviruses 18 (4), 269-282 (2002) | 1e-147 | 22 22IN |
37 37IN |
59 | HIVDB |
| Yamaguchi (2003) | NEAR full-length genomes of 15 HIV type 1 group O isolates | AIDS Res. Hum. Retroviruses 19 (11), 979-988 (2003) | 0 | 15 15PR 15RT 15IN |
15 15PR 15RT 15IN |
100 | HIVDB |
| Yamaguchi (2005) | HIV infections in northwestern Cameroon: identification of HIV type 1 group O and dual HIV type 1 group M and group O infections | AIDS Res. Hum. Retroviruses 20 (9), 944-957 (2004) | 1e-164 | 15 15IN |
15 15IN |
100 | HIVDB |
| Yamaguchi (2006) | IDENTIFICATION of HIV Type 1 Group N Infections in a Husband and Wife in Cameroon: Viral Genome Sequences Provide Evidence for Horizontal Transmission | AIDS Res. Hum. Retroviruses 22 (1), 83-92 (2006) | 0 | 2 2PR 2RT 2IN |
2 2RT 2IN |
100 | HIVDB |
| Yamaguchi (2006) | HIV-1 Group N: Evidence of Ongoing Transmission in Cameroon | AIDS Res. Hum. Retroviruses 22 (5), 453-457 (2006) | 1e-155 | 1 1IN |
1 1IN |
100 | HIVDB |
| Yamaguchi (2008) | HIV Type 2 Intergroup Recombinant Identified in Cameroon | AIDS Res. Hum. Retroviruses 24 (1), 86-91 (2008) | 0 | |
2 1RT 2IN |
0 | Pending |
| Yamaguchi (2009) | HIV type 1 group M subtype G in Cameroon: five genome sequences | AIDS Res. Hum. Retroviruses 25 (4), 469-473 (2009) | 0 | 5 5PR 5RT 5IN |
5 5RT 5IN |
100 | HIVDB |
| Yamaguchi (2010) | Near full-length sequence of HIV type 1 subtype J strain 04CMU11421 from Cameroon | AIDS Res. Hum. Retroviruses 26 (6), 693-697 (2010) | 0 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Yang Hsu (2005) | CHARACTERIZATION of mutations in CRF01_AE virus isolates from antiretroviral treatment naive and experienced patients in Singapore | J. Acquir. Immune Defic. Syndr. (2005) In press | 0 | 104 104PR 104RT |
104 102PR 104RT |
100 | HIVDB |
| Yang (2000) | PHYLOGENETIC analysis of protease and transmembrane region of HIV type 1 group O | AIDS Res. Hum. Retroviruses 16 (11), 1075-1081 (2000) | 8e-15 | 20 20PR |
20 20PR |
100 | HIVDB |
| Yang (2004) | GENETIC diversity and high proportion of intersubtype recombinants among HIV type 1-infected pregnant women in Kisumu, western Kenya | AIDS Res. Hum. Retroviruses 20 (5), 565-574 (2004) | 1e-157 | 38 38PR 38RT |
38 38PR 38RT |
100 | HIVDB |
| Yang (2010) | Development and Application of a Broadly Sensitive Dried-Blood-Spot-Based Genotyping Assay for Global Surveillance of HIV-1 Drug Resistance | J. Clin. Microbiol. 48 (9), 3158-3164 (2010) | 1e-147 | |
32 32RT |
0 | Pending |
| Yang (2010) | First case of HIV-1 CRF06_cpx in Taiwan | Unpublished | 0 | |
1 1RT |
0 | Unpublished |
| Yang (2010) | An uncommon case of HIV-1 transmission due to a knife fight | Unpublished | 0 | |
47 47RT |
0 | Pending |
| Yang (2008) | GENETIC and stochastic influences on the interaction of human immunodeficiency virus type 1 and cytotoxic T lymphocytes in identical twins | Unpublished | 0 | |
23 23RT 23IN |
0 | Evolution/quasispecies study |
| Yang (2003) | IDENTIFICATION and characterization of a new class of human immunodeficiency virus type 1 recombinants comprised of two circulating recombinant forms, CRF07_BC and CRF08_BC, in China | J. Virol. 77 (1), 685-695 (2003) | 5e-90 | 5 5PR 5RT 2IN |
5 5PR 5RT |
100 | HIVDB |
| Yang (2007) | DRUG-RESISTANT associated mutations in RT of AIDS patients with ART in Hubei, China | Unpublished | 0 | |
3 2PR 1RT |
0 | Case report(s) / study subset |
| Yang (2002) | ON-GOING generation of multiple forms of HIV-1 intersubtype recombinants in the Yunnan Province of China | AIDS 16 (10), 1401-1407 (2002) | 1e-121 | 39 39PR 39RT |
39 39PR 39RT |
100 | HIVDB |
| Ye (2011) | Sequence analysis of gag-pol gene of Human Immunodeficiency Virus Type 1 of Inersubtype (B'/C) Recombinant Strain in Beijing of China | Unpublished | 1e-146 | |
39 33PR 29RT |
0 | Pending |
| Yebra (2008) | CLINICAL differences and viral diversity between newly HIV type 1-diagnosed African and non-African patients in Spain (2005-2007) | AIDS Res. Hum. Retroviruses 25 (1), 37-44 (2009) | 0 | |
13 2PR 12RT |
0 | Pending |
| Yebra (2010) | HIV-1 non-B subtypes: High transmitted NNRTI-resistance in Spain and impaired genotypic resistance interpretation due to variability | Antiviral Res. 85 (2), 409-417 (2010) | 0 | 187 187PR 184RT |
187 94PR 171RT |
100 | HIVDB |
| Yedavalli (1998) | CONSERVATION of an intact vif gene of human immunodeficiency virus type 1 during maternal-fetal transmission | J. Virol. 72 (2), 1092-1102 (1998) | 0.02 | |
90 90IN |
0 | Gene fragment(s) |
| Yedavalli (2001) | LOW conservation of functional domains of HIV type 1 vif and vpr genes in infected mothers correlates with lack of vertical transmission | AIDS Res. Hum. Retroviruses 17 (10), 911-923 (2001) | 0.02 | |
58 58IN |
0 | Gene fragment(s) |
| Yerly (2001) | DRUG resistance mutations in HIV-1-infected subjects during protease inhibitor-containing HAART with nelfinavir or indinavir | Antivir. Ther. (Lond.) (2001) In press | 1e-130 | |
188 94PR 94RT |
0 | ARV Rx and/or other data are N/A |
| Yerly (2004) | HIV-1 co/super-infection in intravenous drug users | AIDS 18 (10), 1413-1421 (2004) | 1e-109 | |
57 57RT |
0 | Pending |
| Yerly (2005) | NOSOCOMIAL outbreak of multiple bloodborne viral infections | J. Infect. Dis. 184 (3), 369-372 (2001) | 2e-48 | 1 1PR |
1 1PR |
100 | HIVDB |
| York-Higgins (2003) | HUMAN immunodeficiency virus type 1 cellular host range, replication, and cytopathicity are linked to the envelope region of the viral genome | J. Virol. 64 (8), 4016-4020 (1990) | 0 | |
1 1PR 1RT 1IN |
0 | Laboratory/experimental isolate |
| Young (1998) | RESISTANCE mutations in protease and reverse transcriptase genes of human immunodeficiency virus type 1 isolates from patients with combination antiretroviral therapy failure | J. Infect. Dis. 178 (5), 1497-1501 (1998) | 1e-127 | 39 39PR 39RT |
39 39PR 39RT |
100 | HIVDB |
| Youngpairoy (2006) | ANTIRETROVIRAL resistance-associated mutations in protease and reverse transcriptase of Human Immunodeficiency virus type 1 from drug naive persons in Cameroon: a high prevalence of novel mutations | Unpublished | 0 | 43 43PR 43RT |
57 28PR 57RT |
75 | HIVDB |
| Yu (2008) | Genetic diversity and drug resistance of HIV type 1 circulating recombinant Form_BC among drug users in Guangdong Province | AIDS Res. Hum. Retroviruses 25 (9), 869-875 (2009) | 1e-170 | 100 99PR 100RT |
100 57PR 79RT |
100 | HIVDB |
| Yuste (2000) | UNUSUAL distribution of mutations associated with serial bottleneck passages of human immunodeficiency virus type 1 | J. Virol. 74 (20), 9546-9552 (2000) | 1e-165 | |
8 8PR 8RT 8IN |
0 | Evolution/quasispecies study |
| Zagury (1996) | GENETIC variability between isolates of human immunodeficiency virus (HIV) type 2 is comparable to the variability among HIV type 1 | Proc. Natl. Acad. Sci. U.S.A. 85 (16), 5941-5945 (1988) | 9e-98 | 1 1PR 1RT 1IN |
1 1RT 1IN |
100 | HIVDB |
| Zarandia (2005) | HIV-1 Genetic Diversity and Genotypic Drug Susceptibility in the Republic of Georgia | AIDS Res. Hum. Retroviruses 22 (5), 470-476 (2006) | 0 | 48 43PR 43RT 5IN |
48 48PR 48RT 5IN |
100 | HIVDB |
| Zeh (2003) | NIGERIAN HIV Type 2 Subtype A and B from Heterotypic HIV Type 1 and HIV Type 2 or Monotypic HIV Type 2 Infections | AIDS Res. Hum. Retroviruses 21 (1), 17-27 (2005) | 1e-50 | 106 106PR |
106 106PR |
100 | HIVDB |
| Zeh (2010) | Emergence of HIV-1 Drug Resistance among Breastfeeding Infants Born to HIV-infected Mothers taking Highly Active Antiretroviral Therapy for Prevention of Mother-to-Child Transmission | Unpublished | 0 | |
20 20RT |
0 | Unpublished |
| Zhang (2010) | Surveillance of transmitted HIV type 1 drug resistance in newly diagnosed hiv type 1-infected patients in Shandong Province, China | AIDS Res. Hum. Retroviruses 26 (1), 99-103 (2010) | 1e-145 | 18 18PR 18RT |
18 18RT |
100 | HIVDB |
| Zhang (1999) | QUANTIFYING residual HIV-1 replication in patients receiving combination antiretroviral therapy | N. Engl. J. Med. 340 (21), 1605-1613 (1999) | 1e-121 | |
50 50PR |
0 | Evolution/quasispecies study |
| Zhang (2004) | CULTURED HIV-1, Group M, Subtype A | Unpublished | 6e-46 | |
1 1IN |
0 | Case report(s) / study subset |
| Zhang (1997) | DRUG resistance during indinavir therapy is caused by mutations in the protease gene and in its Gag substrate cleavage sites | J. Virol. 71 (9), 6662-6670 (1997) | 1e-130 | 565 565PR |
567 567PR |
99 | HIVDB |
| Zhao (2009) | Identification of new recombinant of CRF22 with subtype A1 or CRF02_AG of HIV-1 in Cameroon | AIDS Res Hum Retroviruses. 2010 Sep;26(9):1033-45. | 0 | 3 3PR 3RT 3IN |
4 4RT 4IN |
75 | HIVDB |
| Zhao (2009) | Prevalence of drug resistance in treatment-naive HIV-1 patients in Shenzhen, China | Unpublished | 1e-163 | |
21 18PR 9RT |
0 | Case report(s) / study subset |
| Zheng (1996) | SEQUENCE analyses of the reverse transcriptase region of HIV-1 isolates from Sydney, Australia | Unpublished | 1e-98 | |
91 91RT |
0 | ARV Rx and/or other data are N/A |
| Zhong (2003) | GENETIC and Biological Properties of HIV Type 1 Isolates Prevalent in Villagers of the Cameroon Equatorial Rain Forests and Grass Fields: Further Evidence of Broad HIV Type 1 Genetic Diversity | AIDS Res. Hum. Retroviruses 19 (12), 1167-1178 (2003) | 1e-49 | 4 4PR |
4 4PR |
100 | HIVDB |
| Zhong (2007) | GENETIC Diversity and Drug Resistance of Human Immunodeficiency Virus Type 1 (HIV-1) Strains Circulating in Shanghai | AIDS Res. Hum. Retroviruses 23 (7), 847-856 (2007) | 1e-151 | 70 70PR 70RT |
70 49PR 70RT |
100 | HIVDB |
| Zhou (2007) | HIV-1 subtypes and recombinants in Heilongjiang province | Chin Med J (Engl). 2007 Nov 20;120(22):2006-10. | 1e-141 | |
25 25RT |
0 | Pending |
| Zhu (1995) | WAS HIV present in 1959? | Nature 374 (6522), 503-504 (1995) | 1e-163 | |
1 1PR 1RT 1IN |
0 | Pending |
| Zhu (2001) | AN African HIV-1 sequence from 1959 and implications for the origin of the epidemic | Nature 391 (6667), 594-597 (1998) | 2e-17 | |
15 15RT |
0 | Gene fragment(s) |
| Zolfo (2010) | Genotypic impact of prolonged detectable HIV-1 RNA viral load after HAART failure in a CRF01_AE infected cohort | AIDS Res. Hum. Retroviruses (2010) In press | 6e-49 | 2 2PR |
2 2PR |
100 | HIVDB |
| Zolopa (1999) | HIV-1 genotypic resistance patterns predict response to saquinavir-ritonavir therapy in patients in whom previous protease inhibitor therapy had failed | Ann. Intern. Med. 131 (11), 813-821 (1999) | 1e-121 | 102 54PR 48RT |
108 55PR 54RT |
94 | HIVDB |
| zur Megede (2002) | NOVEL evolutionary analyses of full-length HIV type 1 subtype C molecular clones from Cape Town, South Africa | AIDS Res. Hum. Retroviruses 18 (17), 1327-1332 (2002) | 1e-164 | 3 3PR 3RT 3IN |
3 3PR 3RT 3IN |
100 | HIVDB |