<!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genotype-Phenotype Datasets

Version 5.0, July 30, 2010

  • To access high quality filtered datasets from HIVDB and analyses using methods described in the paper by Rhee SY, Taylor J, Wadhera G, Ben-Hur A, Brutlag DL, Shafer RW., Genotypic predictors of human immunodeficiency virus type 1 drug resistance.,Proceedings of National Academy of Sciences of the United States of America, Oct 25, 2006, click here.

  • To access complete unfiltered datasets from HIVDB by gene and phenotype assay, click the links below:

    Gene Method Data
    PR PhenoSense (ViroLogicTM)12256 phenotype results from 1809 isolates:
    Tab delimited | Comma separated (Excel)
    Antivirogram (VircoTM)10314 phenotype results from 1492 isolates:
    Tab delimited | Comma separated (Excel)
    All Others3336 phenotype results from 831 isolates:
    Tab delimited | Comma separated (Excel)
    RT PhenoSense (ViroLogicTM)8432 phenotype results from 996 isolates:
    Tab delimited | Comma separated (Excel)
    Antivirogram (VircoTM)12166 phenotype results from 1693 isolates:
    Tab delimited | Comma separated (Excel)
    All Others5914 phenotype results from 1015 isolates:
    Tab delimited | Comma separated (Excel)

    Description of fields in the datasets

    Field NameDescription
    SeqIDSequence identifier
    SubtypeSubtype of sequence
    MethodPhenotype method
    RefIDPublished reference. View References Table
    TypeClinical vs. Lab Isolate. Lab isolates are site directed mutants or results of in vitro passage.
    IsolateNameIsolate identifier
    Drug FoldFold resistance of Drug X compared to the wild type.
    Drug FoldMatchFold match for Drug X. '=' for most results. '<' if result is below the lower limit of the assay. '>' if the result is greater than the upper limit of the assay.
    P1...P nAmino acid at this position. '-' indicates consensus; '.' indicates no sequence; '#' indicates an insertion; '~' indicates a deletion; '*' indicates a stop codon and a letter indicates one letter Amino Acid substitution. Two and more amino acid codes indicates a mixture. The consensus B amino acid sequences can be found here.
    Mutation ListsMutation Lists provided at the far right of the output are lists of mutations present in the sequence. Some lists contain all the mutations, others contain specific sublists.