#---------------------------- BLASTX (DNAPROTEINS)  -------------------------
item:blastx
itemmethod:(sed "s/[#%]/>/" <in1 > in1.f; /usr/local/biotools/blast/blastall -p blastx -d $BLASTDB -i in1.f -W $WORDLEN -M PAM30  > in1.tmp; /usr/openwin/bin/gedit in1.tmp; rm in1*)&

in:in1
informat:flat
insave:

arg:BLASTDB
argtype:choice_list
arglabel:Which Database
argchoice:HIV Proteins:$DATABASE/hiv17-08-01.PROT.fasta
argchoice:genpept:$GDE_HELP_DIR/BLAST/genpept

arg:WORDLEN
argtype:slider
arglabel:Word Size
argmin:1
argmax:5
argvalue:3

arg:Matrix
arglabel:Substitution Matrix:
argtype:choice_list
argchoice:PAM30:PAM30
argchoice:PAM70:PAM70

arg:CODE
argtype:choice_list
arglabel:Genetic Code
argchoice:Standard or Universal:0
argchoice:Vertebrate Mitochondrial:1
argchoice:Yeast Mitochondrial:2
argchoice:Mold Mitochondrial and Mycoplasma:3
argchoice:Invertebrate Mitochondrial:4
argchoice:Ciliate Macronuclear:5
argchoice:Protozoan Mitochondrial:6
argchoice:Plant Mitochondrial:7
argchoice:Echinodermate Mitochondrial:8