PAUP* Scripts

Scripts for Advanced Phylogenetic Analysis under PAUP *

The files for download are a set of NEXUS scripts to create fine distance and likelihood trees. It was Created by Marco Salemi, University of Florida-Gainsville and Tulio de Oliveira, Africa Centre for Health and Population Studies, University of kwaZulu-Natal.




Felsenstein 81 (F81)
dynamweight+F81G.nex


Tamura-Nei (TrN)
dynamTRng+SPR.nex
dynamTRngI+SPR.nex
dynamTRngI+NNI+TBR.nex
Haseqewa-Kishino-Yano (HKY 1985)
dynamHKYig+SPR.nex
dynamHKYg+NNI+TBR.nex
dynamHKYig+NNI+TBR.nex
Tranversion Model (TVM)
dynamweight+TVMig.nex

dynamTVMig+NNI+TBR.nex
General Time Reversible (GTR)
dynamREVig+SPR.nex

dynamREVig+NNI+TBR.nex



Page last updated by Tulio de Oliveira.